HEADER DNA BINDING PROTEIN 12-JUL-18 6H1V TITLE THE CRYSTAL STRUCTURE OF POL2CORE IN COMPLEX WITH DNA AND AN INCOMING TITLE 2 NUCLEOTIDE, CARRYING AN FE-S CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE II SUBUNIT A; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(P*TP*AP*AP*CP*CP*GP*CP*GP*TP*TP*(DOC))-3'); COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*AP*AP*TP*TP*GP*AP*AP*CP*GP*CP*GP*GP*TP*TP*A)- COMPND 15 3'); COMPND 16 CHAIN: T; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: POL2, DUN2, YNL262W, N0825; SOURCE 7 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS POL EPSILON, M644G, DNA, COMPLEX, DNA BINDING PROTEIN, FE-S EXPDTA X-RAY DIFFRACTION AUTHOR V.PARKASH,E.JOHANSSON REVDAT 3 17-JAN-24 6H1V 1 REMARK REVDAT 2 26-JUN-19 6H1V 1 JRNL REVDAT 1 24-APR-19 6H1V 0 JRNL AUTH J.TER BEEK,V.PARKASH,G.O.BYLUND,P.OSTERMAN, JRNL AUTH 2 A.E.SAUER-ERIKSSON,E.JOHANSSON JRNL TITL STRUCTURAL EVIDENCE FOR AN ESSENTIAL FE-S CLUSTER IN THE JRNL TITL 2 CATALYTIC CORE DOMAIN OF DNA POLYMERASE ε. JRNL REF NUCLEIC ACIDS RES. V. 47 5712 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30968138 JRNL DOI 10.1093/NAR/GKZ248 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 39250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9909 - 6.4395 0.98 2730 163 0.1731 0.2003 REMARK 3 2 6.4395 - 5.1398 0.98 2700 134 0.2141 0.2584 REMARK 3 3 5.1398 - 4.4986 0.99 2750 131 0.1930 0.2280 REMARK 3 4 4.4986 - 4.0911 0.98 2656 127 0.2030 0.2125 REMARK 3 5 4.0911 - 3.8000 0.99 2724 132 0.2276 0.2800 REMARK 3 6 3.8000 - 3.5773 0.99 2653 142 0.2372 0.2556 REMARK 3 7 3.5773 - 3.3991 0.97 2652 148 0.2531 0.2626 REMARK 3 8 3.3991 - 3.2518 0.98 2628 145 0.2916 0.3245 REMARK 3 9 3.2518 - 3.1271 0.99 2661 132 0.3012 0.3533 REMARK 3 10 3.1271 - 3.0195 0.99 2659 138 0.3128 0.3302 REMARK 3 11 3.0195 - 2.9254 0.99 2654 146 0.3322 0.3373 REMARK 3 12 2.9254 - 2.8420 0.99 2666 166 0.3459 0.3614 REMARK 3 13 2.8420 - 2.7674 0.95 2601 132 0.3712 0.3874 REMARK 3 14 2.7674 - 2.7001 0.95 2560 120 0.3657 0.3962 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-17; 05-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 90; 90 REMARK 200 PH : 7-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-1; ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98400; 1.73598 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M; DECTRIS REMARK 200 PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39543 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 73.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 1.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M8O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-3350, 50 MM HEPES-NAOH PH 7.0, REMARK 280 10 MM MGCL2, 400 MM LIAC, AND 10 MM 2-AMINOETHANESULFONIC ACID REMARK 280 (TAURINE), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K. 20% REMARK 280 PEG-3350, 50 MM HEPES-NAOH PH 7.0, 10 MM MGCL2, 400 MM LIAC, AND REMARK 280 10 MM 2-AMINOETHANESULFONIC ACID (TAURINE), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.10500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.10500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ASN A 8 REMARK 465 ASN A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 TYR A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 LYS A 22 REMARK 465 TYR A 23 REMARK 465 ASN A 24 REMARK 465 THR A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 ASN A 28 REMARK 465 ASN A 29 REMARK 465 TYR A 30 REMARK 465 THR A 91 REMARK 465 LEU A 92 REMARK 465 SER A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 SER A 96 REMARK 465 ASN A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 ASN A 101 REMARK 465 SER A 102 REMARK 465 ASN A 103 REMARK 465 ASP A 104 REMARK 465 GLY A 105 REMARK 465 GLU A 106 REMARK 465 ARG A 107 REMARK 465 VAL A 108 REMARK 465 THR A 109 REMARK 465 THR A 110 REMARK 465 VAL A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 ASN A 228 REMARK 465 GLY A 229 REMARK 465 SER A 230 REMARK 465 GLU A 231 REMARK 465 LYS A 232 REMARK 465 ALA A 666 REMARK 465 SER A 667 REMARK 465 CYS A 668 REMARK 465 ASP A 669 REMARK 465 PHE A 670 REMARK 465 ASN A 671 REMARK 465 ARG A 672 REMARK 465 PRO A 673 REMARK 465 GLY A 674 REMARK 465 ASN A 713 REMARK 465 LYS A 714 REMARK 465 PHE A 715 REMARK 465 SER A 716 REMARK 465 LYS A 717 REMARK 465 LYS A 718 REMARK 465 DC T 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 MET A 49 CG SD CE REMARK 470 GLN A 59 CG CD OE1 NE2 REMARK 470 ASN A 61 CG OD1 ND2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLN A 71 CD OE1 NE2 REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 GLU A 154 CD OE1 OE2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 158 CE NZ REMARK 470 GLU A 161 CD OE1 OE2 REMARK 470 GLU A 201 CD OE1 OE2 REMARK 470 ASN A 216 CG OD1 ND2 REMARK 470 ASN A 217 CG OD1 ND2 REMARK 470 VAL A 218 CG1 CG2 REMARK 470 GLN A 219 CG CD OE1 NE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 LYS A 257 CD CE NZ REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 PHE A 300 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 306 CG OD1 OD2 REMARK 470 GLN A 307 CG CD OE1 NE2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 ILE A 328 CG1 CG2 CD1 REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 ASP A 331 CG OD1 OD2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 ASP A 334 CG OD1 OD2 REMARK 470 LYS A 340 NZ REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 PHE A 346 CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 GLN A 360 CG CD OE1 NE2 REMARK 470 ARG A 361 CD NE CZ NH1 NH2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 LYS A 440 CD CE NZ REMARK 470 GLN A 444 CG CD OE1 NE2 REMARK 470 GLU A 453 CB CG CD OE1 OE2 REMARK 470 LEU A 454 CG CD1 CD2 REMARK 470 MET A 459 CG SD CE REMARK 470 TYR A 462 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 465 CG CD OE1 OE2 REMARK 470 LYS A 466 CD CE NZ REMARK 470 GLN A 468 CD OE1 NE2 REMARK 470 GLU A 472 CD OE1 OE2 REMARK 470 LYS A 487 CD CE NZ REMARK 470 ASP A 537 CG OD1 OD2 REMARK 470 ARG A 541 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 549 CG CD OE1 OE2 REMARK 470 GLU A 562 CD OE1 OE2 REMARK 470 GLU A 573 CG CD OE1 OE2 REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 ASP A 582 CG OD1 OD2 REMARK 470 GLN A 586 CD OE1 NE2 REMARK 470 LEU A 588 CD1 CD2 REMARK 470 GLU A 590 CD OE1 OE2 REMARK 470 LYS A 593 CE NZ REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LYS A 601 CD CE NZ REMARK 470 ASP A 605 CG OD1 OD2 REMARK 470 LYS A 606 CD CE NZ REMARK 470 GLU A 611 CG CD OE1 OE2 REMARK 470 GLU A 612 CD OE1 OE2 REMARK 470 LYS A 614 CG CD CE NZ REMARK 470 ASN A 615 CG OD1 ND2 REMARK 470 GLN A 619 CG CD OE1 NE2 REMARK 470 GLU A 623 CD OE1 OE2 REMARK 470 LYS A 625 CD CE NZ REMARK 470 GLU A 626 CD OE1 OE2 REMARK 470 ASN A 627 CG OD1 ND2 REMARK 470 GLU A 632 CG CD OE1 OE2 REMARK 470 LYS A 660 CG CD CE NZ REMARK 470 GLU A 662 CG CD OE1 OE2 REMARK 470 ARG A 663 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 664 CG OD1 OD2 REMARK 470 LYS A 675 CG CD CE NZ REMARK 470 THR A 676 OG1 CG2 REMARK 470 LYS A 680 CG CD CE NZ REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 LYS A 693 CG CD CE NZ REMARK 470 GLU A 696 CG CD OE1 OE2 REMARK 470 MET A 699 CG SD CE REMARK 470 LYS A 701 CG CD CE NZ REMARK 470 ARG A 702 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 705 CG CD OE1 NE2 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 PHE A 709 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 712 CG CD CE NZ REMARK 470 LYS A 719 CG CD CE NZ REMARK 470 LEU A 721 CG CD1 CD2 REMARK 470 ASP A 724 CG OD1 OD2 REMARK 470 GLU A 725 CG CD OE1 OE2 REMARK 470 LYS A 736 CD CE NZ REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 ARG A 738 CD NE CZ NH1 NH2 REMARK 470 GLU A 741 CD OE1 OE2 REMARK 470 ARG A 744 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 745 CG CD CE NZ REMARK 470 VAL A 746 CG1 CG2 REMARK 470 TYR A 747 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 749 NE CZ NH1 NH2 REMARK 470 GLU A 759 CG CD OE1 OE2 REMARK 470 LYS A 789 CD CE NZ REMARK 470 LYS A 792 CD CE NZ REMARK 470 LYS A 797 CG CD CE NZ REMARK 470 ASP A 799 CG OD1 OD2 REMARK 470 LYS A 803 CG CD CE NZ REMARK 470 ASP A 807 CG OD1 OD2 REMARK 470 GLU A 808 CG CD OE1 OE2 REMARK 470 LYS A 810 CG CD CE NZ REMARK 470 LYS A 811 CG CD CE NZ REMARK 470 LYS A 837 CD CE NZ REMARK 470 LYS A 885 CG CD CE NZ REMARK 470 GLU A 889 CG CD OE1 OE2 REMARK 470 GLU A 896 CG CD OE1 OE2 REMARK 470 LYS A 899 CG CD CE NZ REMARK 470 LYS A 900 CD CE NZ REMARK 470 LYS A 917 CE NZ REMARK 470 GLU A 925 CD OE1 OE2 REMARK 470 GLU A 961 CD OE1 OE2 REMARK 470 LEU A1030 CG CD1 CD2 REMARK 470 LEU A1037 CG CD1 CD2 REMARK 470 GLU A1038 CD OE1 OE2 REMARK 470 ASP A1039 CG OD1 OD2 REMARK 470 GLU A1040 CG CD OE1 OE2 REMARK 470 ASP A1041 CG OD1 OD2 REMARK 470 VAL A1043 CG1 CG2 REMARK 470 LEU A1045 CD1 CD2 REMARK 470 LYS A1057 CD CE NZ REMARK 470 GLN A1062 CG CD OE1 NE2 REMARK 470 LYS A1063 CG CD CE NZ REMARK 470 ILE A1067 CD1 REMARK 470 ARG A1071 CD NE CZ NH1 NH2 REMARK 470 LEU A1073 CG CD1 CD2 REMARK 470 LEU A1077 CG CD1 CD2 REMARK 470 GLU A1079 CB CG CD OE1 OE2 REMARK 470 ASP A1080 CB CG OD1 OD2 REMARK 470 MET A1081 CG SD CE REMARK 470 LYS A1083 CD CE NZ REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 LYS A1090 CD CE NZ REMARK 470 ILE A1093 CG1 CG2 CD1 REMARK 470 SER A1094 OG REMARK 470 SER A1095 OG REMARK 470 LYS A1096 CG CD CE NZ REMARK 470 PHE A1098 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A1099 CG OD1 ND2 REMARK 470 GLU A1104 CG CD OE1 OE2 REMARK 470 ILE A1107 CG1 CG2 CD1 REMARK 470 SER A1113 OG REMARK 470 ASP A1115 CG OD1 OD2 REMARK 470 ILE A1116 CD1 REMARK 470 ILE A1118 CG1 CG2 CD1 REMARK 470 ARG A1120 CG CD NE CZ NH1 NH2 REMARK 470 SER A1121 OG REMARK 470 PHE A1122 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1123 CG CD1 CD2 REMARK 470 ARG A1124 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1125 CD NE CZ NH1 NH2 REMARK 470 THR A1127 OG1 CG2 REMARK 470 LEU A1128 CG CD1 CD2 REMARK 470 ASP A1129 CG OD1 OD2 REMARK 470 LEU A1132 CG CD1 CD2 REMARK 470 GLU A1133 CG CD OE1 OE2 REMARK 470 ASP A1134 CG OD1 OD2 REMARK 470 LEU A1135 CG CD1 CD2 REMARK 470 ASP A1136 CG OD1 OD2 REMARK 470 ILE A1137 CG1 CG2 CD1 REMARK 470 THR A1139 OG1 CG2 REMARK 470 ILE A1140 CG1 CG2 CD1 REMARK 470 GLU A1148 CD OE1 OE2 REMARK 470 LYS A1181 CG CD CE NZ REMARK 470 ARG A1182 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1183 CG CD CE NZ REMARK 470 LYS A1187 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DT P 1 P OP1 OP2 O5' REMARK 480 DT T 2 P OP1 OP2 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT P 10 C3' - O3' - P ANGL. DEV. = -8.3 DEGREES REMARK 500 DOC P 11 O3' - P - OP2 ANGL. DEV. = 18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 160 41.56 -99.57 REMARK 500 ARG A 220 -83.04 -127.28 REMARK 500 ARG A 277 -72.01 -60.42 REMARK 500 PRO A 284 -167.30 -73.84 REMARK 500 LEU A 298 6.93 81.54 REMARK 500 ILE A 328 -166.35 -69.77 REMARK 500 SER A 329 13.60 -157.66 REMARK 500 PRO A 341 -7.18 -59.45 REMARK 500 LEU A 358 -72.02 -46.56 REMARK 500 ARG A 370 73.82 51.53 REMARK 500 PHE A 382 -67.85 -138.48 REMARK 500 SER A 414 -163.85 -125.99 REMARK 500 GLU A 465 -73.89 -64.20 REMARK 500 TYR A 488 -50.04 -127.50 REMARK 500 TYR A 543 109.67 -166.87 REMARK 500 ASN A 600 -5.47 -143.12 REMARK 500 ASN A 609 32.21 -144.39 REMARK 500 ALA A 661 -163.58 -115.25 REMARK 500 PRO A 691 40.97 -87.70 REMARK 500 ASN A 706 46.85 -103.50 REMARK 500 VAL A 746 -61.09 -95.07 REMARK 500 HIS A 748 -11.78 69.85 REMARK 500 VAL A 750 -31.87 -130.29 REMARK 500 PRO A 768 35.64 -84.01 REMARK 500 PRO A 800 25.17 -65.20 REMARK 500 SER A 801 -51.56 -138.18 REMARK 500 ASP A 802 102.71 -44.47 REMARK 500 SER A 843 104.93 -168.18 REMARK 500 THR A 876 -74.37 53.80 REMARK 500 GLU A 889 -87.84 -112.45 REMARK 500 GLU A 991 -164.46 -100.30 REMARK 500 LYS A1054 -156.95 -118.83 REMARK 500 PHE A1076 -65.02 -104.07 REMARK 500 VAL A1082 51.17 -112.64 REMARK 500 GLU A1104 40.88 -93.62 REMARK 500 ALA A1114 -153.75 -97.70 REMARK 500 ILE A1158 -63.90 -120.12 REMARK 500 ASN A1169 106.59 -38.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 640 OD1 REMARK 620 2 ASP A 640 OD2 59.4 REMARK 620 3 VAL A 641 O 61.9 116.5 REMARK 620 4 ASP A 877 OD2 101.0 92.1 77.2 REMARK 620 5 DTP A1202 O3G 85.9 113.1 83.8 153.4 REMARK 620 6 DTP A1202 O2B 141.4 159.2 82.4 83.5 75.6 REMARK 620 7 DTP A1202 O1A 140.9 82.0 154.7 85.5 105.4 77.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 665 SG REMARK 620 2 SF4 A1201 S2 130.8 REMARK 620 3 SF4 A1201 S3 111.6 104.1 REMARK 620 4 SF4 A1201 S4 98.7 104.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1201 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 677 SG REMARK 620 2 SF4 A1201 S1 107.7 REMARK 620 3 SF4 A1201 S2 101.1 104.4 REMARK 620 4 SF4 A1201 S4 132.6 104.1 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1201 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 763 SG REMARK 620 2 SF4 A1201 S1 99.9 REMARK 620 3 SF4 A1201 S2 117.8 104.3 REMARK 620 4 SF4 A1201 S3 124.0 104.1 104.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTP A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GZG RELATED DB: PDB REMARK 900 E-COLI POL2 COMPLEX CONTAINING THE ESSENTIAL FE-S CLUSTER DBREF 6H1V A 1 1187 UNP P21951 DPOE_YEAST 1 1187 DBREF 6H1V P 1 11 PDB 6H1V 6H1V 1 11 DBREF 6H1V T 1 16 PDB 6H1V 6H1V 1 16 SEQADV 6H1V ALA A 290 UNP P21951 ASP 290 ENGINEERED MUTATION SEQADV 6H1V ALA A 292 UNP P21951 GLU 292 ENGINEERED MUTATION SEQRES 1 A 1187 MET MET PHE GLY LYS LYS LYS ASN ASN GLY GLY SER SER SEQRES 2 A 1187 THR ALA ARG TYR SER ALA GLY ASN LYS TYR ASN THR LEU SEQRES 3 A 1187 SER ASN ASN TYR ALA LEU SER ALA GLN GLN LEU LEU ASN SEQRES 4 A 1187 ALA SER LYS ILE ASP ASP ILE ASP SER MET MET GLY PHE SEQRES 5 A 1187 GLU ARG TYR VAL PRO PRO GLN TYR ASN GLY ARG PHE ASP SEQRES 6 A 1187 ALA LYS ASP ILE ASP GLN ILE PRO GLY ARG VAL GLY TRP SEQRES 7 A 1187 LEU THR ASN MET HIS ALA THR LEU VAL SER GLN GLU THR SEQRES 8 A 1187 LEU SER SER GLY SER ASN GLY GLY GLY ASN SER ASN ASP SEQRES 9 A 1187 GLY GLU ARG VAL THR THR ASN GLN GLY ILE SER GLY VAL SEQRES 10 A 1187 ASP PHE TYR PHE LEU ASP GLU GLU GLY GLY SER PHE LYS SEQRES 11 A 1187 SER THR VAL VAL TYR ASP PRO TYR PHE PHE ILE ALA CYS SEQRES 12 A 1187 ASN ASP GLU SER ARG VAL ASN ASP VAL GLU GLU LEU VAL SEQRES 13 A 1187 LYS LYS TYR LEU GLU SER CYS LEU LYS SER LEU GLN ILE SEQRES 14 A 1187 ILE ARG LYS GLU ASP LEU THR MET ASP ASN HIS LEU LEU SEQRES 15 A 1187 GLY LEU GLN LYS THR LEU ILE LYS LEU SER PHE VAL ASN SEQRES 16 A 1187 SER ASN GLN LEU PHE GLU ALA ARG LYS LEU LEU ARG PRO SEQRES 17 A 1187 ILE LEU GLN ASP ASN ALA ASN ASN ASN VAL GLN ARG ASN SEQRES 18 A 1187 ILE TYR ASN VAL ALA ALA ASN GLY SER GLU LYS VAL ASP SEQRES 19 A 1187 ALA LYS HIS LEU ILE GLU ASP ILE ARG GLU TYR ASP VAL SEQRES 20 A 1187 PRO TYR HIS VAL ARG VAL SER ILE ASP LYS ASP ILE ARG SEQRES 21 A 1187 VAL GLY LYS TRP TYR LYS VAL THR GLN GLN GLY PHE ILE SEQRES 22 A 1187 GLU ASP THR ARG LYS ILE ALA PHE ALA ASP PRO VAL VAL SEQRES 23 A 1187 MET ALA PHE ALA ILE ALA THR THR LYS PRO PRO LEU LYS SEQRES 24 A 1187 PHE PRO ASP SER ALA VAL ASP GLN ILE MET MET ILE SER SEQRES 25 A 1187 TYR MET ILE ASP GLY GLU GLY PHE LEU ILE THR ASN ARG SEQRES 26 A 1187 GLU ILE ILE SER GLU ASP ILE GLU ASP PHE GLU TYR THR SEQRES 27 A 1187 PRO LYS PRO GLU TYR PRO GLY PHE PHE THR ILE PHE ASN SEQRES 28 A 1187 GLU ASN ASP GLU VAL ALA LEU LEU GLN ARG PHE PHE GLU SEQRES 29 A 1187 HIS ILE ARG ASP VAL ARG PRO THR VAL ILE SER THR PHE SEQRES 30 A 1187 ASN GLY ASP PHE PHE ASP TRP PRO PHE ILE HIS ASN ARG SEQRES 31 A 1187 SER LYS ILE HIS GLY LEU ASP MET PHE ASP GLU ILE GLY SEQRES 32 A 1187 PHE ALA PRO ASP ALA GLU GLY GLU TYR LYS SER SER TYR SEQRES 33 A 1187 CYS SER HIS MET ASP CYS PHE ARG TRP VAL LYS ARG ASP SEQRES 34 A 1187 SER TYR LEU PRO GLN GLY SER GLN GLY LEU LYS ALA VAL SEQRES 35 A 1187 THR GLN SER LYS LEU GLY TYR ASN PRO ILE GLU LEU ASP SEQRES 36 A 1187 PRO GLU LEU MET THR PRO TYR ALA PHE GLU LYS PRO GLN SEQRES 37 A 1187 HIS LEU SER GLU TYR SER VAL SER ASP ALA VAL ALA THR SEQRES 38 A 1187 TYR TYR LEU TYR MET LYS TYR VAL HIS PRO PHE ILE PHE SEQRES 39 A 1187 SER LEU CYS THR ILE ILE PRO LEU ASN PRO ASP GLU THR SEQRES 40 A 1187 LEU ARG LYS GLY THR GLY THR LEU CYS GLU MET LEU LEU SEQRES 41 A 1187 MET VAL GLN ALA TYR GLN HIS ASN ILE LEU LEU PRO ASN SEQRES 42 A 1187 LYS HIS THR ASP PRO ILE GLU ARG PHE TYR ASP GLY HIS SEQRES 43 A 1187 LEU LEU GLU SER GLU THR TYR VAL GLY GLY HIS VAL GLU SEQRES 44 A 1187 SER LEU GLU ALA GLY VAL PHE ARG SER ASP LEU LYS ASN SEQRES 45 A 1187 GLU PHE LYS ILE ASP PRO SER ALA ILE ASP GLU LEU LEU SEQRES 46 A 1187 GLN GLU LEU PRO GLU ALA LEU LYS PHE SER VAL GLU VAL SEQRES 47 A 1187 GLU ASN LYS SER SER VAL ASP LYS VAL THR ASN PHE GLU SEQRES 48 A 1187 GLU ILE LYS ASN GLN ILE THR GLN LYS LEU LEU GLU LEU SEQRES 49 A 1187 LYS GLU ASN ASN ILE ARG ASN GLU LEU PRO LEU ILE TYR SEQRES 50 A 1187 HIS VAL ASP VAL ALA SER MET TYR PRO ASN ILE MET THR SEQRES 51 A 1187 THR ASN ARG LEU GLN PRO ASP SER ILE LYS ALA GLU ARG SEQRES 52 A 1187 ASP CYS ALA SER CYS ASP PHE ASN ARG PRO GLY LYS THR SEQRES 53 A 1187 CYS ALA ARG LYS LEU LYS TRP ALA TRP ARG GLY GLU PHE SEQRES 54 A 1187 PHE PRO SER LYS MET ASP GLU TYR ASN MET ILE LYS ARG SEQRES 55 A 1187 ALA LEU GLN ASN GLU THR PHE PRO ASN LYS ASN LYS PHE SEQRES 56 A 1187 SER LYS LYS LYS VAL LEU THR PHE ASP GLU LEU SER TYR SEQRES 57 A 1187 ALA ASP GLN VAL ILE HIS ILE LYS LYS ARG LEU THR GLU SEQRES 58 A 1187 TYR SER ARG LYS VAL TYR HIS ARG VAL LYS VAL SER GLU SEQRES 59 A 1187 ILE VAL GLU ARG GLU ALA ILE VAL CYS GLN ARG GLU ASN SEQRES 60 A 1187 PRO PHE TYR VAL ASP THR VAL LYS SER PHE ARG ASP ARG SEQRES 61 A 1187 ARG TYR GLU PHE LYS GLY LEU ALA LYS THR TRP LYS GLY SEQRES 62 A 1187 ASN LEU SER LYS ILE ASP PRO SER ASP LYS HIS ALA ARG SEQRES 63 A 1187 ASP GLU ALA LYS LYS MET ILE VAL LEU TYR ASP SER LEU SEQRES 64 A 1187 GLN LEU ALA HIS LYS VAL ILE LEU ASN SER PHE TYR GLY SEQRES 65 A 1187 TYR VAL MET ARG LYS GLY SER ARG TRP TYR SER MET GLU SEQRES 66 A 1187 MET ALA GLY ILE THR CYS LEU THR GLY ALA THR ILE ILE SEQRES 67 A 1187 GLN MET ALA ARG ALA LEU VAL GLU ARG VAL GLY ARG PRO SEQRES 68 A 1187 LEU GLU LEU ASP THR ASP GLY ILE TRP CYS ILE LEU PRO SEQRES 69 A 1187 LYS SER PHE PRO GLU THR TYR PHE PHE THR LEU GLU ASN SEQRES 70 A 1187 GLY LYS LYS LEU TYR LEU SER TYR PRO CYS SER MET LEU SEQRES 71 A 1187 ASN TYR ARG VAL HIS GLN LYS PHE THR ASN HIS GLN TYR SEQRES 72 A 1187 GLN GLU LEU LYS ASP PRO LEU ASN TYR ILE TYR GLU THR SEQRES 73 A 1187 HIS SER GLU ASN THR ILE PHE PHE GLU VAL ASP GLY PRO SEQRES 74 A 1187 TYR LYS ALA MET ILE LEU PRO SER SER LYS GLU GLU GLY SEQRES 75 A 1187 LYS GLY ILE LYS LYS ARG TYR ALA VAL PHE ASN GLU ASP SEQRES 76 A 1187 GLY SER LEU ALA GLU LEU LYS GLY PHE GLU LEU LYS ARG SEQRES 77 A 1187 ARG GLY GLU LEU GLN LEU ILE LYS ASN PHE GLN SER ASP SEQRES 78 A 1187 ILE PHE LYS VAL PHE LEU GLU GLY ASP THR LEU GLU GLY SEQRES 79 A 1187 CYS TYR SER ALA VAL ALA SER VAL CYS ASN ARG TRP LEU SEQRES 80 A 1187 ASP VAL LEU ASP SER HIS GLY LEU MET LEU GLU ASP GLU SEQRES 81 A 1187 ASP LEU VAL SER LEU ILE CYS GLU ASN ARG SER MET SER SEQRES 82 A 1187 LYS THR LEU LYS GLU TYR GLU GLY GLN LYS SER THR SER SEQRES 83 A 1187 ILE THR THR ALA ARG ARG LEU GLY ASP PHE LEU GLY GLU SEQRES 84 A 1187 ASP MET VAL LYS ASP LYS GLY LEU GLN CYS LYS TYR ILE SEQRES 85 A 1187 ILE SER SER LYS PRO PHE ASN ALA PRO VAL THR GLU ARG SEQRES 86 A 1187 ALA ILE PRO VAL ALA ILE PHE SER ALA ASP ILE PRO ILE SEQRES 87 A 1187 LYS ARG SER PHE LEU ARG ARG TRP THR LEU ASP PRO SER SEQRES 88 A 1187 LEU GLU ASP LEU ASP ILE ARG THR ILE ILE ASP TRP GLY SEQRES 89 A 1187 TYR TYR ARG GLU ARG LEU GLY SER ALA ILE GLN LYS ILE SEQRES 90 A 1187 ILE THR ILE PRO ALA ALA LEU GLN GLY VAL SER ASN PRO SEQRES 91 A 1187 VAL PRO ARG VAL GLU HIS PRO ASP TRP LEU LYS ARG LYS SEQRES 92 A 1187 ILE ALA THR LYS SEQRES 1 P 11 DT DA DA DC DC DG DC DG DT DT DOC SEQRES 1 T 16 DC DT DC DT DT DG DA DA DC DG DC DG DG SEQRES 2 T 16 DT DT DA HET DOC P 11 18 HET SF4 A1201 8 HET DTP A1202 30 HET MG A1203 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 SF4 FE4 S4 FORMUL 5 DTP C10 H16 N5 O12 P3 FORMUL 6 MG MG 2+ FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 ALA A 31 MET A 50 1 20 HELIX 2 AA2 ASP A 145 SER A 147 5 3 HELIX 3 AA3 ARG A 148 LEU A 160 1 13 HELIX 4 AA4 ASN A 179 GLY A 183 5 5 HELIX 5 AA5 ASN A 195 GLN A 211 1 17 HELIX 6 AA6 ASP A 234 HIS A 237 5 4 HELIX 7 AA7 PRO A 248 ASP A 258 1 11 HELIX 8 AA8 ASP A 354 ARG A 370 1 17 HELIX 9 AA9 PHE A 382 ILE A 393 1 12 HELIX 10 AB1 ASP A 397 ILE A 402 1 6 HELIX 11 AB2 CYS A 422 SER A 430 1 9 HELIX 12 AB3 PRO A 433 GLN A 437 5 5 HELIX 13 AB4 GLY A 438 GLY A 448 1 11 HELIX 14 AB5 ASP A 455 ALA A 463 1 9 HELIX 15 AB6 LYS A 466 TYR A 488 1 23 HELIX 16 AB7 TYR A 488 CYS A 497 1 10 HELIX 17 AB8 ASN A 503 LEU A 508 1 6 HELIX 18 AB9 GLY A 511 HIS A 527 1 17 HELIX 19 AC1 ASP A 577 GLU A 587 1 11 HELIX 20 AC2 GLU A 587 VAL A 598 1 12 HELIX 21 AC3 ASN A 609 ASN A 627 1 19 HELIX 22 AC4 SER A 643 ASN A 652 1 10 HELIX 23 AC5 GLN A 655 ILE A 659 5 5 HELIX 24 AC6 LYS A 693 GLN A 705 1 13 HELIX 25 AC7 SER A 727 HIS A 748 1 22 HELIX 26 AC8 PRO A 768 LYS A 797 1 30 HELIX 27 AC9 ASP A 802 TYR A 833 1 32 HELIX 28 AD1 VAL A 834 ARG A 836 5 3 HELIX 29 AD2 SER A 843 GLU A 866 1 24 HELIX 30 AD3 TYR A 905 PHE A 918 1 14 HELIX 31 AD4 LEU A 992 PHE A 1003 1 12 HELIX 32 AD5 LYS A 1004 GLU A 1008 5 5 HELIX 33 AD6 THR A 1011 SER A 1032 1 22 HELIX 34 AD7 GLU A 1040 ILE A 1046 1 7 HELIX 35 AD8 THR A 1055 GLU A 1060 5 6 HELIX 36 AD9 SER A 1064 GLY A 1078 1 15 HELIX 37 AE1 GLU A 1079 LYS A 1083 5 5 HELIX 38 AE2 VAL A 1102 GLU A 1104 5 3 HELIX 39 AE3 ALA A 1110 ALA A 1114 5 5 HELIX 40 AE4 ASP A 1115 LEU A 1128 1 14 HELIX 41 AE5 ASP A 1136 ILE A 1141 1 6 HELIX 42 AE6 ASP A 1142 ILE A 1158 1 17 HELIX 43 AE7 ILE A 1158 GLN A 1165 1 8 HELIX 44 AE8 PRO A 1177 LYS A 1187 1 11 SHEET 1 AA1 5 PHE A 129 VAL A 134 0 SHEET 2 AA1 5 ILE A 114 LEU A 122 -1 N PHE A 119 O SER A 131 SHEET 3 AA1 5 ARG A 75 VAL A 87 -1 N THR A 85 O GLY A 116 SHEET 4 AA1 5 TRP A 264 THR A 268 -1 O TYR A 265 N GLY A 77 SHEET 5 AA1 5 GLY A 271 GLU A 274 -1 O ILE A 273 N LYS A 266 SHEET 1 AA2 4 SER A 166 LYS A 172 0 SHEET 2 AA2 4 LYS A 186 SER A 192 -1 O LYS A 190 N GLN A 168 SHEET 3 AA2 4 TYR A 138 CYS A 143 -1 N PHE A 139 O LEU A 191 SHEET 4 AA2 4 ILE A 239 ARG A 243 -1 O ASP A 241 N ALA A 142 SHEET 1 AA3 7 PHE A 335 GLU A 336 0 SHEET 2 AA3 7 PHE A 346 GLU A 352 -1 O PHE A 347 N PHE A 335 SHEET 3 AA3 7 GLU A 318 ASN A 324 1 N LEU A 321 O PHE A 350 SHEET 4 AA3 7 GLN A 307 ILE A 315 -1 N ILE A 315 O GLU A 318 SHEET 5 AA3 7 VAL A 286 THR A 294 -1 N ALA A 288 O MET A 314 SHEET 6 AA3 7 VAL A 373 THR A 376 1 O SER A 375 N MET A 287 SHEET 7 AA3 7 SER A 418 ASP A 421 1 O MET A 420 N ILE A 374 SHEET 1 AA4 2 ALA A 405 PRO A 406 0 SHEET 2 AA4 2 TYR A 412 LYS A 413 -1 O LYS A 413 N ALA A 405 SHEET 1 AA5 4 PHE A 542 TYR A 543 0 SHEET 2 AA5 4 HIS A 546 TYR A 553 -1 O HIS A 546 N TYR A 543 SHEET 3 AA5 4 ALA A 678 PHE A 689 -1 O ARG A 686 N THR A 552 SHEET 4 AA5 4 VAL A 752 CYS A 763 -1 O ALA A 760 N LEU A 681 SHEET 1 AA6 5 VAL A 558 SER A 560 0 SHEET 2 AA6 5 ARG A 870 ASP A 875 -1 O LEU A 874 N GLU A 559 SHEET 3 AA6 5 GLY A 878 PRO A 884 -1 O GLY A 878 N ASP A 875 SHEET 4 AA6 5 PRO A 634 VAL A 641 -1 N LEU A 635 O LEU A 883 SHEET 5 AA6 5 PHE A 944 TYR A 950 -1 O TYR A 950 N ILE A 636 SHEET 1 AA7 4 GLY A 564 ARG A 567 0 SHEET 2 AA7 4 ALA A 952 LEU A 955 -1 O LEU A 955 N GLY A 564 SHEET 3 AA7 4 TYR A 969 PHE A 972 -1 O ALA A 970 N ILE A 954 SHEET 4 AA7 4 LEU A 978 LYS A 982 -1 O GLU A 980 N VAL A 971 SHEET 1 AA8 2 ASN A 572 LYS A 575 0 SHEET 2 AA8 2 ILE A 629 GLU A 632 -1 O GLU A 632 N ASN A 572 SHEET 1 AA9 2 PHE A 709 PRO A 710 0 SHEET 2 AA9 2 VAL A 720 LEU A 721 -1 O LEU A 721 N PHE A 709 SHEET 1 AB1 2 THR A 890 LEU A 895 0 SHEET 2 AB1 2 LYS A 899 SER A 904 -1 O LEU A 903 N TYR A 891 SHEET 1 AB2 2 ASN A 920 ASP A 928 0 SHEET 2 AB2 2 ILE A 933 GLU A 939 -1 O GLU A 935 N GLU A 925 SHEET 1 AB3 2 TYR A1091 ILE A1093 0 SHEET 2 AB3 2 ALA A1106 PRO A1108 -1 O ILE A1107 N ILE A1092 LINK O3' DT P 10 P DOC P 11 1555 1555 1.56 LINK OD1 ASP A 640 MG MG A1203 1555 1555 1.90 LINK OD2 ASP A 640 MG MG A1203 1555 1555 2.42 LINK O VAL A 641 MG MG A1203 1555 1555 2.71 LINK SG CYS A 665 FE1 SF4 A1201 1555 1555 2.26 LINK SG CYS A 677 FE3 SF4 A1201 1555 1555 2.27 LINK SG CYS A 763 FE4 SF4 A1201 1555 1555 2.26 LINK OD2 ASP A 877 MG MG A1203 1555 1555 2.06 LINK O3G DTP A1202 MG MG A1203 1555 1555 2.22 LINK O2B DTP A1202 MG MG A1203 1555 1555 2.41 LINK O1A DTP A1202 MG MG A1203 1555 1555 2.06 CISPEP 1 GLY A 948 PRO A 949 0 3.05 CISPEP 2 LYS A 1096 PRO A 1097 0 3.97 SITE 1 AC1 5 ASP A 664 CYS A 665 CYS A 677 ALA A 678 SITE 2 AC1 5 CYS A 763 SITE 1 AC2 15 ASP A 640 VAL A 641 ALA A 642 SER A 643 SITE 2 AC2 15 MET A 644 TYR A 645 ARG A 781 LYS A 785 SITE 3 AC2 15 LYS A 824 ASN A 828 ASP A 877 MG A1203 SITE 4 AC2 15 DOC P 11 DT T 5 DG T 6 SITE 1 AC3 4 ASP A 640 VAL A 641 ASP A 877 DTP A1202 CRYST1 148.210 70.040 149.930 90.00 109.43 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006747 0.000000 0.002380 0.00000 SCALE2 0.000000 0.014278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007073 0.00000