HEADER HYDROLASE 14-JUL-18 6H2Q TITLE CRYSTAL STRUCTURE OF ARG184GLN MUTANT OF HUMAN PROLIDASE WITH MN IONS TITLE 2 AND LEUPRO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, KEYWDS 2 MUTATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,R.PIWOWARCZYK,M.S.WEISS REVDAT 3 22-APR-20 6H2Q 1 REMARK REVDAT 2 26-SEP-18 6H2Q 1 JRNL REVDAT 1 15-AUG-18 6H2Q 0 JRNL AUTH P.WILK,M.UEHLEIN,R.PIWOWARCZYK,H.DOBBEK,U.MUELLER,M.S.WEISS JRNL TITL STRUCTURAL BASIS FOR PROLIDASE DEFICIENCY DISEASE JRNL TITL 2 MECHANISMS. JRNL REF FEBS J. V. 285 3422 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30066404 JRNL DOI 10.1111/FEBS.14620 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 114771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7641 - 4.3885 1.00 7817 146 0.1454 0.1691 REMARK 3 2 4.3885 - 3.4836 1.00 7643 143 0.1151 0.1310 REMARK 3 3 3.4836 - 3.0434 1.00 7555 141 0.1293 0.1679 REMARK 3 4 3.0434 - 2.7652 1.00 7558 140 0.1393 0.1611 REMARK 3 5 2.7652 - 2.5670 1.00 7509 140 0.1477 0.1678 REMARK 3 6 2.5670 - 2.4156 1.00 7496 140 0.1508 0.1519 REMARK 3 7 2.4156 - 2.2947 1.00 7532 140 0.1506 0.1945 REMARK 3 8 2.2947 - 2.1948 1.00 7458 139 0.1497 0.1946 REMARK 3 9 2.1948 - 2.1103 1.00 7481 140 0.1610 0.1764 REMARK 3 10 2.1103 - 2.0375 1.00 7513 139 0.1742 0.2127 REMARK 3 11 2.0375 - 1.9738 1.00 7444 138 0.2000 0.2268 REMARK 3 12 1.9738 - 1.9173 1.00 7441 139 0.2164 0.2725 REMARK 3 13 1.9173 - 1.8669 1.00 7453 139 0.2483 0.2819 REMARK 3 14 1.8669 - 1.8213 1.00 7446 139 0.2707 0.3173 REMARK 3 15 1.8213 - 1.7799 0.98 7326 136 0.2920 0.3226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7838 REMARK 3 ANGLE : 0.915 10631 REMARK 3 CHIRALITY : 0.035 1157 REMARK 3 PLANARITY : 0.004 1396 REMARK 3 DIHEDRAL : 13.088 2910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5899 24.4540 70.5295 REMARK 3 T TENSOR REMARK 3 T11: 0.2414 T22: 0.2435 REMARK 3 T33: 0.2802 T12: -0.0070 REMARK 3 T13: 0.0126 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.7970 L22: 0.8294 REMARK 3 L33: 0.7286 L12: -0.1495 REMARK 3 L13: -0.0103 L23: 0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.0703 S13: -0.0964 REMARK 3 S21: -0.0965 S22: 0.0316 S23: -0.2795 REMARK 3 S31: 0.0533 S32: 0.0091 S33: 0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7683 27.8867 78.3538 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.3016 REMARK 3 T33: 0.4188 T12: 0.0152 REMARK 3 T13: -0.0257 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.1804 L22: 0.2839 REMARK 3 L33: 0.4226 L12: -0.0278 REMARK 3 L13: 0.2237 L23: -0.3335 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.0620 S13: 0.0240 REMARK 3 S21: 0.0851 S22: 0.0851 S23: -0.2964 REMARK 3 S31: 0.0203 S32: 0.1385 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3818 34.9617 79.9172 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.3012 REMARK 3 T33: 0.4000 T12: 0.0110 REMARK 3 T13: -0.0575 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.3538 L22: 0.3520 REMARK 3 L33: 0.2539 L12: 0.0550 REMARK 3 L13: -0.1139 L23: 0.2463 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.1828 S13: 0.0591 REMARK 3 S21: 0.0951 S22: 0.1110 S23: -0.3597 REMARK 3 S31: 0.0409 S32: -0.0242 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9833 34.4775 70.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.2626 REMARK 3 T33: 0.2266 T12: 0.0112 REMARK 3 T13: -0.0401 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.4993 L22: 1.2318 REMARK 3 L33: 0.3030 L12: -0.0687 REMARK 3 L13: 0.0579 L23: -0.1359 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0408 S13: 0.0351 REMARK 3 S21: -0.0735 S22: 0.0255 S23: 0.2094 REMARK 3 S31: -0.0118 S32: -0.0673 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1605 55.6299 76.5304 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.2619 REMARK 3 T33: 0.3143 T12: 0.0270 REMARK 3 T13: -0.0173 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.8892 L22: 1.3397 REMARK 3 L33: 0.5284 L12: -0.0702 REMARK 3 L13: -0.2484 L23: 0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.0786 S13: 0.3268 REMARK 3 S21: 0.0403 S22: 0.0305 S23: -0.0446 REMARK 3 S31: -0.1526 S32: -0.0048 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9862 53.5644 81.6515 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.2944 REMARK 3 T33: 0.3056 T12: 0.0369 REMARK 3 T13: 0.0058 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.1621 L22: 1.3630 REMARK 3 L33: 0.6439 L12: -0.0123 REMARK 3 L13: 0.3357 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.1613 S13: 0.1959 REMARK 3 S21: 0.2181 S22: 0.0130 S23: 0.1432 REMARK 3 S31: -0.1715 S32: -0.1402 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 453 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6115 45.5375 61.1936 REMARK 3 T TENSOR REMARK 3 T11: 0.3665 T22: 0.3544 REMARK 3 T33: 0.2849 T12: 0.0271 REMARK 3 T13: -0.0617 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.2675 L22: 0.5397 REMARK 3 L33: 0.3297 L12: -0.3918 REMARK 3 L13: -0.0073 L23: 0.1159 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.5651 S13: 0.1713 REMARK 3 S21: -0.3771 S22: 0.0189 S23: 0.1996 REMARK 3 S31: -0.0530 S32: -0.1110 S33: 0.0396 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8966 23.5880 97.7203 REMARK 3 T TENSOR REMARK 3 T11: 0.3894 T22: 0.3153 REMARK 3 T33: 0.2394 T12: 0.0345 REMARK 3 T13: 0.0452 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.7659 L22: 0.9287 REMARK 3 L33: 0.4645 L12: -0.1657 REMARK 3 L13: 0.1474 L23: -0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: -0.1140 S13: 0.0371 REMARK 3 S21: 0.3970 S22: 0.0819 S23: 0.1712 REMARK 3 S31: -0.1348 S32: -0.0987 S33: -0.0013 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6227 21.4816 106.0883 REMARK 3 T TENSOR REMARK 3 T11: 0.5786 T22: 0.4172 REMARK 3 T33: 0.2598 T12: 0.0478 REMARK 3 T13: -0.0192 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.2158 L22: 0.2548 REMARK 3 L33: 0.1949 L12: 0.1171 REMARK 3 L13: 0.1882 L23: -0.0395 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: -0.2560 S13: 0.0949 REMARK 3 S21: 0.4296 S22: 0.1446 S23: -0.1392 REMARK 3 S31: -0.1216 S32: 0.1098 S33: 0.0968 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3027 14.4833 105.1619 REMARK 3 T TENSOR REMARK 3 T11: 0.5471 T22: 0.3724 REMARK 3 T33: 0.2666 T12: 0.0432 REMARK 3 T13: -0.0417 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.4598 L22: 0.1854 REMARK 3 L33: 0.4310 L12: -0.1948 REMARK 3 L13: -0.2476 L23: -0.1051 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: -0.1816 S13: -0.0127 REMARK 3 S21: 0.4826 S22: 0.1072 S23: -0.0861 REMARK 3 S31: -0.0172 S32: 0.0765 S33: -0.0827 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8847 4.6968 72.5116 REMARK 3 T TENSOR REMARK 3 T11: 0.2331 T22: 0.2589 REMARK 3 T33: 0.2710 T12: -0.0150 REMARK 3 T13: -0.0315 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.6271 L22: 1.3547 REMARK 3 L33: 0.2274 L12: -0.3007 REMARK 3 L13: 0.0185 L23: 0.1308 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0500 S13: -0.1790 REMARK 3 S21: -0.0589 S22: -0.0038 S23: 0.1438 REMARK 3 S31: 0.0165 S32: -0.0425 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 344 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4989 -5.3577 83.1829 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.2750 REMARK 3 T33: 0.3173 T12: -0.0008 REMARK 3 T13: -0.0207 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.4492 L22: 0.6348 REMARK 3 L33: 0.5372 L12: -0.0980 REMARK 3 L13: -0.0828 L23: -0.1973 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.0879 S13: -0.2480 REMARK 3 S21: 0.2231 S22: 0.0919 S23: 0.0330 REMARK 3 S31: 0.1412 S32: 0.1125 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 417 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6679 -7.5009 67.8309 REMARK 3 T TENSOR REMARK 3 T11: 0.2538 T22: 0.3009 REMARK 3 T33: 0.3425 T12: 0.0030 REMARK 3 T13: -0.0169 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.4779 L22: 1.0186 REMARK 3 L33: 0.3174 L12: -0.0023 REMARK 3 L13: 0.3968 L23: -0.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: 0.1796 S13: -0.2588 REMARK 3 S21: -0.0944 S22: -0.0378 S23: -0.1674 REMARK 3 S31: 0.0715 S32: 0.1094 S33: 0.0002 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 458 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7402 0.2334 71.4751 REMARK 3 T TENSOR REMARK 3 T11: 0.2586 T22: 0.3314 REMARK 3 T33: 0.4433 T12: -0.0250 REMARK 3 T13: -0.0426 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.2420 L22: 0.5095 REMARK 3 L33: 0.2342 L12: -0.2181 REMARK 3 L13: -0.0483 L23: 0.1981 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.0771 S13: -0.2048 REMARK 3 S21: -0.0400 S22: -0.0076 S23: 0.4312 REMARK 3 S31: 0.0803 S32: -0.2840 S33: -0.0290 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 506 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7716 39.8029 77.8012 REMARK 3 T TENSOR REMARK 3 T11: 0.4287 T22: 0.3581 REMARK 3 T33: 0.5128 T12: 0.1143 REMARK 3 T13: 0.0445 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 5.5050 L22: 9.3021 REMARK 3 L33: 8.4300 L12: 0.6903 REMARK 3 L13: 6.0150 L23: -3.3688 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.0593 S13: -0.0561 REMARK 3 S21: 0.2401 S22: -0.0555 S23: 0.0700 REMARK 3 S31: -0.0162 S32: 0.1033 S33: -0.0709 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 503 THROUGH 503 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2257 7.1375 79.1966 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.4144 REMARK 3 T33: 0.4029 T12: -0.0152 REMARK 3 T13: -0.0830 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.4051 L22: 6.5727 REMARK 3 L33: 4.7822 L12: 2.3577 REMARK 3 L13: 1.9848 L23: 5.6007 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.2461 S13: -0.0103 REMARK 3 S21: -0.1247 S22: 0.0272 S23: -0.2928 REMARK 3 S31: 0.0660 S32: -0.1034 S33: 0.0991 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 504 THROUGH 504) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2370 2.8199 79.0744 REMARK 3 T TENSOR REMARK 3 T11: 0.4603 T22: 0.4153 REMARK 3 T33: 0.4505 T12: 0.0643 REMARK 3 T13: -0.0906 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.4659 L22: 9.5597 REMARK 3 L33: 4.0806 L12: 6.5180 REMARK 3 L13: 0.4321 L23: 0.7206 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.0779 S13: -0.1101 REMARK 3 S21: 0.1931 S22: 0.3621 S23: 0.2226 REMARK 3 S31: -0.5299 S32: -0.5614 S33: -0.4201 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 507 THROUGH 507 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3417 44.4900 79.3761 REMARK 3 T TENSOR REMARK 3 T11: 0.3336 T22: 0.5833 REMARK 3 T33: 0.4646 T12: 0.0975 REMARK 3 T13: -0.0314 T23: -0.1175 REMARK 3 L TENSOR REMARK 3 L11: 2.0326 L22: 2.0161 REMARK 3 L33: 2.0015 L12: 1.9771 REMARK 3 L13: -1.9414 L23: -1.7713 REMARK 3 S TENSOR REMARK 3 S11: -0.3944 S12: 0.5862 S13: -0.6562 REMARK 3 S21: -0.2272 S22: 0.3464 S23: -0.3152 REMARK 3 S31: -0.0618 S32: 0.1062 S33: -0.0047 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -11 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 776794 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 47.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.770 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.82 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NACACODYLATE, 690-760MM REMARK 280 NACITRATE, PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.71600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.71600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.77950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.33050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.77950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.33050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.71600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.77950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.33050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.71600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.77950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.33050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 732 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ASP A 482A REMARK 465 LYS A 482B REMARK 465 ALA A 482C REMARK 465 PHE A 488 REMARK 465 SER A 489 REMARK 465 GLY A 490 REMARK 465 PRO A 491 REMARK 465 LYS A 492 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 LYS B 484 REMARK 465 ALA B 485 REMARK 465 PHE B 486 REMARK 465 THR B 487 REMARK 465 PRO B 488 REMARK 465 PHE B 489 REMARK 465 SER B 490 REMARK 465 GLY B 491 REMARK 465 PRO B 492 REMARK 465 LYS B 493 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN B 500 H2 LEU B 503 1.58 REMARK 500 OE1 GLU B 131 O HOH B 601 2.06 REMARK 500 O HOH A 899 O HOH A 1033 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 953 O HOH A 1026 5455 2.16 REMARK 500 O HOH A 1144 O HOH A 1150 3555 2.16 REMARK 500 O HOH A 1088 O HOH B 1031 5455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -122.54 50.25 REMARK 500 TYR A 57 -131.49 51.32 REMARK 500 CYS A 245 72.05 -119.14 REMARK 500 PRO A 365 39.51 -84.00 REMARK 500 ASN B 13 -126.45 48.59 REMARK 500 TYR B 57 -126.37 50.16 REMARK 500 CYS B 245 75.39 -118.09 REMARK 500 TYR B 256 153.56 -49.11 REMARK 500 PRO B 365 33.86 -84.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1153 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A1154 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH B1116 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD1 REMARK 620 2 ASP A 276 OD2 56.8 REMARK 620 3 ASP A 287 OD1 93.6 150.4 REMARK 620 4 GLU A 452 OE1 98.1 94.2 89.8 REMARK 620 5 LEU A 506 N 88.6 90.9 88.1 173.1 REMARK 620 6 LEU A 506 O 147.5 96.9 110.7 103.1 71.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 HIS A 370 NE2 88.5 REMARK 620 3 GLU A 412 OE2 155.7 84.4 REMARK 620 4 GLU A 452 OE2 82.3 131.9 85.3 REMARK 620 5 LEU A 506 O 96.5 124.9 106.6 103.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 276 OD1 REMARK 620 2 ASP B 276 OD2 58.0 REMARK 620 3 ASP B 287 OD1 92.5 150.5 REMARK 620 4 GLU B 452 OE1 94.5 91.9 89.7 REMARK 620 5 LEU B 503 O 158.3 106.3 102.1 101.4 REMARK 620 6 LEU B 503 N 88.1 89.3 90.3 177.4 76.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 287 OD2 REMARK 620 2 HIS B 370 NE2 90.1 REMARK 620 3 GLU B 412 OE2 155.2 83.2 REMARK 620 4 GLU B 452 OE2 83.3 134.6 84.6 REMARK 620 5 LEU B 503 O 97.3 129.2 105.4 96.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEU A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEU B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MBY RELATED DB: PDB REMARK 900 RELATED ID: 5MBZ RELATED DB: PDB REMARK 900 RELATED ID: 5MC0 RELATED DB: PDB REMARK 900 RELATED ID: 5MC1 RELATED DB: PDB REMARK 900 RELATED ID: 5MC2 RELATED DB: PDB REMARK 900 RELATED ID: 5MC3 RELATED DB: PDB REMARK 900 RELATED ID: 5MC4 RELATED DB: PDB REMARK 900 RELATED ID: 5MC5 RELATED DB: PDB DBREF 6H2Q A 1 492 UNP P12955 PEPD_HUMAN 1 493 DBREF 6H2Q B 1 493 UNP P12955 PEPD_HUMAN 1 493 SEQADV 6H2Q GLN A 184 UNP P12955 ARG 184 ENGINEERED MUTATION SEQADV 6H2Q GLN B 184 UNP P12955 ARG 184 ENGINEERED MUTATION SEQRES 1 A 493 MET ALA ALA ALA THR GLY PRO SER PHE TRP LEU GLY ASN SEQRES 2 A 493 GLU THR LEU LYS VAL PRO LEU ALA LEU PHE ALA LEU ASN SEQRES 3 A 493 ARG GLN ARG LEU CYS GLU ARG LEU ARG LYS ASN PRO ALA SEQRES 4 A 493 VAL GLN ALA GLY SER ILE VAL VAL LEU GLN GLY GLY GLU SEQRES 5 A 493 GLU THR GLN ARG TYR CYS THR ASP THR GLY VAL LEU PHE SEQRES 6 A 493 ARG GLN GLU SER PHE PHE HIS TRP ALA PHE GLY VAL THR SEQRES 7 A 493 GLU PRO GLY CYS TYR GLY VAL ILE ASP VAL ASP THR GLY SEQRES 8 A 493 LYS SER THR LEU PHE VAL PRO ARG LEU PRO ALA SER HIS SEQRES 9 A 493 ALA THR TRP MET GLY LYS ILE HIS SER LYS GLU HIS PHE SEQRES 10 A 493 LYS GLU LYS TYR ALA VAL ASP ASP VAL GLN TYR VAL ASP SEQRES 11 A 493 GLU ILE ALA SER VAL LEU THR SER GLN LYS PRO SER VAL SEQRES 12 A 493 LEU LEU THR LEU ARG GLY VAL ASN THR ASP SER GLY SER SEQRES 13 A 493 VAL CYS ARG GLU ALA SER PHE ASP GLY ILE SER LYS PHE SEQRES 14 A 493 GLU VAL ASN ASN THR ILE LEU HIS PRO GLU ILE VAL GLU SEQRES 15 A 493 CYS GLN VAL PHE LYS THR ASP MET GLU LEU GLU VAL LEU SEQRES 16 A 493 ARG TYR THR ASN LYS ILE SER SER GLU ALA HIS ARG GLU SEQRES 17 A 493 VAL MET LYS ALA VAL LYS VAL GLY MET LYS GLU TYR GLU SEQRES 18 A 493 LEU GLU SER LEU PHE GLU HIS TYR CYS TYR SER ARG GLY SEQRES 19 A 493 GLY MET ARG HIS SER SER TYR THR CYS ILE CYS GLY SER SEQRES 20 A 493 GLY GLU ASN SER ALA VAL LEU HIS TYR GLY HIS ALA GLY SEQRES 21 A 493 ALA PRO ASN ASP ARG THR ILE GLN ASN GLY ASP MET CYS SEQRES 22 A 493 LEU PHE ASP MET GLY GLY GLU TYR TYR CYS PHE ALA SER SEQRES 23 A 493 ASP ILE THR CYS SER PHE PRO ALA ASN GLY LYS PHE THR SEQRES 24 A 493 ALA ASP GLN LYS ALA VAL TYR GLU ALA VAL LEU ARG SER SEQRES 25 A 493 SER ARG ALA VAL MET GLY ALA MET LYS PRO GLY VAL TRP SEQRES 26 A 493 TRP PRO ASP MET HIS ARG LEU ALA ASP ARG ILE HIS LEU SEQRES 27 A 493 GLU GLU LEU ALA HIS MET GLY ILE LEU SER GLY SER VAL SEQRES 28 A 493 ASP ALA MET VAL GLN ALA HIS LEU GLY ALA VAL PHE MET SEQRES 29 A 493 PRO HIS GLY LEU GLY HIS PHE LEU GLY ILE ASP VAL HIS SEQRES 30 A 493 ASP VAL GLY GLY TYR PRO GLU GLY VAL GLU ARG ILE ASP SEQRES 31 A 493 GLU PRO GLY LEU ARG SER LEU ARG THR ALA ARG HIS LEU SEQRES 32 A 493 GLN PRO GLY MET VAL LEU THR VAL GLU PRO GLY ILE TYR SEQRES 33 A 493 PHE ILE ASP HIS LEU LEU ASP GLU ALA LEU ALA ASP PRO SEQRES 34 A 493 ALA ARG ALA SER PHE LEU ASN ARG GLU VAL LEU GLN ARG SEQRES 35 A 493 PHE ARG GLY PHE GLY GLY VAL ARG ILE GLU GLU ASP VAL SEQRES 36 A 493 VAL VAL THR ASP SER GLY ILE GLU LEU LEU THR CYS VAL SEQRES 37 A 493 PRO ARG THR VAL GLU GLU ILE GLU ALA CYS MET ALA GLY SEQRES 38 A 493 CYS ASP LYS ALA PHE THR PRO PHE SER GLY PRO LYS SEQRES 1 B 493 MET ALA ALA ALA THR GLY PRO SER PHE TRP LEU GLY ASN SEQRES 2 B 493 GLU THR LEU LYS VAL PRO LEU ALA LEU PHE ALA LEU ASN SEQRES 3 B 493 ARG GLN ARG LEU CYS GLU ARG LEU ARG LYS ASN PRO ALA SEQRES 4 B 493 VAL GLN ALA GLY SER ILE VAL VAL LEU GLN GLY GLY GLU SEQRES 5 B 493 GLU THR GLN ARG TYR CYS THR ASP THR GLY VAL LEU PHE SEQRES 6 B 493 ARG GLN GLU SER PHE PHE HIS TRP ALA PHE GLY VAL THR SEQRES 7 B 493 GLU PRO GLY CYS TYR GLY VAL ILE ASP VAL ASP THR GLY SEQRES 8 B 493 LYS SER THR LEU PHE VAL PRO ARG LEU PRO ALA SER HIS SEQRES 9 B 493 ALA THR TRP MET GLY LYS ILE HIS SER LYS GLU HIS PHE SEQRES 10 B 493 LYS GLU LYS TYR ALA VAL ASP ASP VAL GLN TYR VAL ASP SEQRES 11 B 493 GLU ILE ALA SER VAL LEU THR SER GLN LYS PRO SER VAL SEQRES 12 B 493 LEU LEU THR LEU ARG GLY VAL ASN THR ASP SER GLY SER SEQRES 13 B 493 VAL CYS ARG GLU ALA SER PHE ASP GLY ILE SER LYS PHE SEQRES 14 B 493 GLU VAL ASN ASN THR ILE LEU HIS PRO GLU ILE VAL GLU SEQRES 15 B 493 CYS GLN VAL PHE LYS THR ASP MET GLU LEU GLU VAL LEU SEQRES 16 B 493 ARG TYR THR ASN LYS ILE SER SER GLU ALA HIS ARG GLU SEQRES 17 B 493 VAL MET LYS ALA VAL LYS VAL GLY MET LYS GLU TYR GLU SEQRES 18 B 493 LEU GLU SER LEU PHE GLU HIS TYR CYS TYR SER ARG GLY SEQRES 19 B 493 GLY MET ARG HIS SER SER TYR THR CYS ILE CYS GLY SER SEQRES 20 B 493 GLY GLU ASN SER ALA VAL LEU HIS TYR GLY HIS ALA GLY SEQRES 21 B 493 ALA PRO ASN ASP ARG THR ILE GLN ASN GLY ASP MET CYS SEQRES 22 B 493 LEU PHE ASP MET GLY GLY GLU TYR TYR CYS PHE ALA SER SEQRES 23 B 493 ASP ILE THR CYS SER PHE PRO ALA ASN GLY LYS PHE THR SEQRES 24 B 493 ALA ASP GLN LYS ALA VAL TYR GLU ALA VAL LEU ARG SER SEQRES 25 B 493 SER ARG ALA VAL MET GLY ALA MET LYS PRO GLY VAL TRP SEQRES 26 B 493 TRP PRO ASP MET HIS ARG LEU ALA ASP ARG ILE HIS LEU SEQRES 27 B 493 GLU GLU LEU ALA HIS MET GLY ILE LEU SER GLY SER VAL SEQRES 28 B 493 ASP ALA MET VAL GLN ALA HIS LEU GLY ALA VAL PHE MET SEQRES 29 B 493 PRO HIS GLY LEU GLY HIS PHE LEU GLY ILE ASP VAL HIS SEQRES 30 B 493 ASP VAL GLY GLY TYR PRO GLU GLY VAL GLU ARG ILE ASP SEQRES 31 B 493 GLU PRO GLY LEU ARG SER LEU ARG THR ALA ARG HIS LEU SEQRES 32 B 493 GLN PRO GLY MET VAL LEU THR VAL GLU PRO GLY ILE TYR SEQRES 33 B 493 PHE ILE ASP HIS LEU LEU ASP GLU ALA LEU ALA ASP PRO SEQRES 34 B 493 ALA ARG ALA SER PHE LEU ASN ARG GLU VAL LEU GLN ARG SEQRES 35 B 493 PHE ARG GLY PHE GLY GLY VAL ARG ILE GLU GLU ASP VAL SEQRES 36 B 493 VAL VAL THR ASP SER GLY ILE GLU LEU LEU THR CYS VAL SEQRES 37 B 493 PRO ARG THR VAL GLU GLU ILE GLU ALA CYS MET ALA GLY SEQRES 38 B 493 CYS ASP LYS ALA PHE THR PRO PHE SER GLY PRO LYS HET MN A 499 1 HET MN A 500 1 HET GOL A 503 14 HET GOL A 504 14 HET GOL A 505 14 HET LEU A 506 22 HET PRO A 507 15 HET MN B 499 1 HET MN B 500 1 HET LEU B 503 22 HET PRO B 504 15 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM LEU LEUCINE HETNAM PRO PROLINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 4(MN 2+) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 LEU 2(C6 H13 N O2) FORMUL 9 PRO 2(C5 H9 N O2) FORMUL 14 HOH *1070(H2 O) HELIX 1 AA1 LEU A 20 LYS A 36 1 17 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 LYS A 140 1 10 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 235 1 18 HELIX 10 AB1 GLU A 249 VAL A 253 5 5 HELIX 11 AB2 THR A 299 MET A 320 1 22 HELIX 12 AB3 TRP A 325 MET A 344 1 20 HELIX 13 AB4 SER A 350 ALA A 357 1 8 HELIX 14 AB5 LEU A 359 MET A 364 1 6 HELIX 15 AB6 GLY A 393 LEU A 397 5 5 HELIX 16 AB7 ILE A 418 ALA A 427 1 10 HELIX 17 AB8 ASP A 428 SER A 433 1 6 HELIX 18 AB9 ASN A 436 GLN A 441 1 6 HELIX 19 AC1 ARG A 442 ARG A 444 5 3 HELIX 20 AC2 THR A 471 ALA A 480 1 10 HELIX 21 AC3 LEU B 20 LYS B 36 1 17 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 SER B 103 MET B 108 1 6 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 235 1 18 HELIX 30 AD3 GLU B 249 VAL B 253 5 5 HELIX 31 AD4 THR B 299 MET B 320 1 22 HELIX 32 AD5 TRP B 325 MET B 344 1 20 HELIX 33 AD6 SER B 350 ALA B 357 1 8 HELIX 34 AD7 LEU B 359 MET B 364 1 6 HELIX 35 AD8 GLY B 393 LEU B 397 5 5 HELIX 36 AD9 ILE B 418 ASP B 428 1 11 HELIX 37 AE1 ASP B 428 SER B 433 1 6 HELIX 38 AE2 ASN B 436 GLN B 441 1 6 HELIX 39 AE3 ARG B 442 ARG B 444 5 3 HELIX 40 AE4 THR B 471 ALA B 480 1 10 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N VAL A 97 O GLN A 127 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N LEU A 48 O GLY A 84 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N ILE A 45 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 THR A 54 GLN A 55 0 SHEET 2 AA3 2 GLY A 62 VAL A 63 -1 O VAL A 63 N THR A 54 SHEET 1 AA4 2 GLY A 149 VAL A 150 0 SHEET 2 AA4 2 VAL A 157 CYS A 158 -1 O CYS A 158 N GLY A 149 SHEET 1 AA5 2 HIS A 238 SER A 239 0 SHEET 2 AA5 2 GLY A 279 GLU A 280 -1 O GLU A 280 N HIS A 238 SHEET 1 AA6 3 ILE A 244 SER A 247 0 SHEET 2 AA6 3 MET A 272 MET A 277 -1 O LEU A 274 N GLY A 246 SHEET 3 AA6 3 ILE A 288 PRO A 293 -1 O PHE A 292 N CYS A 273 SHEET 1 AA7 3 VAL A 408 VAL A 411 0 SHEET 2 AA7 3 GLU A 453 VAL A 457 -1 O VAL A 455 N LEU A 409 SHEET 3 AA7 3 ILE A 462 LEU A 464 -1 O GLU A 463 N VAL A 456 SHEET 1 AA8 2 GLY A 414 TYR A 416 0 SHEET 2 AA8 2 GLY A 448 ARG A 450 -1 O VAL A 449 N ILE A 415 SHEET 1 AA9 2 SER B 8 PHE B 9 0 SHEET 2 AA9 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AB1 6 ASP B 125 TYR B 128 0 SHEET 2 AB1 6 SER B 93 VAL B 97 1 N LEU B 95 O ASP B 125 SHEET 3 AB1 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AB1 6 ILE B 45 GLN B 49 -1 N LEU B 48 O GLY B 84 SHEET 5 AB1 6 LEU B 144 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AB1 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AB2 2 THR B 54 GLN B 55 0 SHEET 2 AB2 2 GLY B 62 VAL B 63 -1 O VAL B 63 N THR B 54 SHEET 1 AB3 2 GLY B 149 VAL B 150 0 SHEET 2 AB3 2 VAL B 157 CYS B 158 -1 O CYS B 158 N GLY B 149 SHEET 1 AB4 2 HIS B 238 SER B 239 0 SHEET 2 AB4 2 GLY B 279 GLU B 280 -1 O GLU B 280 N HIS B 238 SHEET 1 AB5 3 ILE B 244 SER B 247 0 SHEET 2 AB5 3 MET B 272 MET B 277 -1 O LEU B 274 N GLY B 246 SHEET 3 AB5 3 ILE B 288 PRO B 293 -1 O PHE B 292 N CYS B 273 SHEET 1 AB6 3 VAL B 408 VAL B 411 0 SHEET 2 AB6 3 GLU B 453 VAL B 457 -1 O VAL B 455 N LEU B 409 SHEET 3 AB6 3 ILE B 462 LEU B 464 -1 O GLU B 463 N VAL B 456 SHEET 1 AB7 2 GLY B 414 TYR B 416 0 SHEET 2 AB7 2 GLY B 448 ARG B 450 -1 O VAL B 449 N ILE B 415 SSBOND 1 CYS A 58 CYS B 158 1555 1555 2.06 SSBOND 2 CYS A 158 CYS B 58 1555 1555 2.06 SSBOND 3 CYS B 482 CYS B 482 1555 3555 2.03 LINK OD1 ASP A 276 MN MN A 500 1555 1555 2.32 LINK OD2 ASP A 276 MN MN A 500 1555 1555 2.35 LINK OD1 ASP A 287 MN MN A 500 1555 1555 2.07 LINK OD2 ASP A 287 MN MN A 499 1555 1555 2.24 LINK NE2 HIS A 370 MN MN A 499 1555 1555 2.23 LINK OE2 GLU A 412 MN MN A 499 1555 1555 2.23 LINK OE1 GLU A 452 MN MN A 500 1555 1555 2.12 LINK OE2 GLU A 452 MN MN A 499 1555 1555 2.11 LINK OD1 ASP B 276 MN MN B 500 1555 1555 2.34 LINK OD2 ASP B 276 MN MN B 500 1555 1555 2.14 LINK OD1 ASP B 287 MN MN B 500 1555 1555 2.07 LINK OD2 ASP B 287 MN MN B 499 1555 1555 2.20 LINK NE2 HIS B 370 MN MN B 499 1555 1555 2.13 LINK OE2 GLU B 412 MN MN B 499 1555 1555 2.29 LINK OE1 GLU B 452 MN MN B 500 1555 1555 2.20 LINK OE2 GLU B 452 MN MN B 499 1555 1555 2.20 LINK MN MN A 499 O LEU A 506 1555 1555 2.27 LINK MN MN A 500 N LEU A 506 1555 1555 2.55 LINK MN MN A 500 O LEU A 506 1555 1555 2.27 LINK MN MN B 499 O LEU B 503 1555 1555 1.98 LINK MN MN B 500 O LEU B 503 1555 1555 2.20 LINK MN MN B 500 N LEU B 503 1555 1555 2.41 SITE 1 AC1 6 ASP A 287 HIS A 370 GLU A 412 GLU A 452 SITE 2 AC1 6 MN A 500 LEU A 506 SITE 1 AC2 5 ASP A 276 ASP A 287 GLU A 452 MN A 499 SITE 2 AC2 5 LEU A 506 SITE 1 AC3 5 VAL A 129 ASP A 130 ILE A 132 PHE A 163 SITE 2 AC3 5 ASP A 164 SITE 1 AC4 6 GLN A 49 ARG A 159 GLU A 160 ALA A 161 SITE 2 AC4 6 HOH A 608 HOH A 856 SITE 1 AC5 6 TRP A 10 LYS A 120 HOH A 618 HOH A 625 SITE 2 AC5 6 HOH A 688 ASP B 264 SITE 1 AC6 12 TYR A 241 HIS A 255 ASP A 276 ASP A 287 SITE 2 AC6 12 HIS A 370 HIS A 377 GLU A 412 GLU A 452 SITE 3 AC6 12 MN A 499 MN A 500 PRO A 507 HOH A 681 SITE 1 AC7 10 HIS A 255 HIS A 366 HIS A 377 ARG A 398 SITE 2 AC7 10 GLU A 412 ARG A 450 LEU A 506 HOH A 742 SITE 3 AC7 10 HOH A 766 TRP B 107 SITE 1 AC8 6 ASP B 287 HIS B 370 GLU B 412 GLU B 452 SITE 2 AC8 6 MN B 500 LEU B 503 SITE 1 AC9 5 ASP B 276 ASP B 287 GLU B 452 MN B 499 SITE 2 AC9 5 LEU B 503 SITE 1 AD1 12 TYR B 241 HIS B 255 ASP B 276 ASP B 287 SITE 2 AD1 12 HIS B 370 HIS B 377 GLU B 412 GLU B 452 SITE 3 AD1 12 MN B 499 MN B 500 PRO B 504 HOH B 758 SITE 1 AD2 10 TRP A 107 HIS B 255 HIS B 366 HIS B 377 SITE 2 AD2 10 ARG B 398 GLU B 412 ARG B 450 LEU B 503 SITE 3 AD2 10 HOH B 683 HOH B 713 CRYST1 103.559 106.661 217.432 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004599 0.00000