HEADER DNA BINDING PROTEIN 16-JUL-18 6H2X TITLE MUKB COILED-COIL ELBOW FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOME PARTITION PROTEIN MUKB,CHROMOSOME PARTITION COMPND 3 PROTEIN MUKB; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: STRUCTURAL MAINTENANCE OF CHROMOSOME-RELATED PROTEIN, COMPND 6 STRUCTURAL MAINTENANCE OF CHROMOSOME-RELATED PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: MUKB, B0924, JW0907; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHROMOSOME ORGANIZATION, CHROMOSOME SEGREGATION, COILED COIL, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.BUERMANN,J.LOWE REVDAT 4 23-OCT-24 6H2X 1 REMARK REVDAT 3 01-MAY-24 6H2X 1 REMARK REVDAT 2 20-MAR-19 6H2X 1 JRNL REVDAT 1 06-MAR-19 6H2X 0 JRNL AUTH F.BURMANN,B.G.LEE,T.THAN,L.SINN,F.J.O'REILLY,S.YATSKEVICH, JRNL AUTH 2 J.RAPPSILBER,B.HU,K.NASMYTH,J.LOWE JRNL TITL A FOLDED CONFORMATION OF MUKBEF AND COHESIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 227 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 30833788 JRNL DOI 10.1038/S41594-019-0196-Z REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.240 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4860 - 5.4045 1.00 2950 124 0.2109 0.2507 REMARK 3 2 5.4045 - 4.2913 0.99 2903 110 0.2268 0.2439 REMARK 3 3 4.2913 - 3.7493 1.00 2918 165 0.2270 0.2735 REMARK 3 4 3.7493 - 3.4067 1.00 2849 185 0.2482 0.3174 REMARK 3 5 3.4067 - 3.1626 0.99 2878 130 0.2765 0.3387 REMARK 3 6 3.1626 - 2.9762 0.99 2991 114 0.2893 0.3474 REMARK 3 7 2.9762 - 2.8272 0.99 2905 144 0.2955 0.3807 REMARK 3 8 2.8272 - 2.7041 0.99 2810 158 0.3323 0.4324 REMARK 3 9 2.7041 - 2.6001 0.99 2908 182 0.3564 0.4390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2874 REMARK 3 ANGLE : 0.425 3872 REMARK 3 CHIRALITY : 0.027 424 REMARK 3 PLANARITY : 0.002 531 REMARK 3 DIHEDRAL : 20.441 1809 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (JUN1-2017) REMARK 200 DATA SCALING SOFTWARE : AIMLESS (0.5.32) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.95100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (2.8.0) REMARK 200 STARTING MODEL: INITIAL MODEL FROM SAD EXPERIMENT REMARK 200 REMARK 200 REMARK: THIN PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MES, 150 MM NACL, 1 MM EDTA, 1 REMARK 280 MM TCEP, 1 MM NAN3, 22% PEG3350, 0.25 M NASCN, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.51800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 333 REMARK 465 SER A 334 REMARK 465 ALA A 1049 REMARK 465 ASP A 1050 REMARK 465 SER A 1051 REMARK 465 GLY A 1052 REMARK 465 ALA A 1053 REMARK 465 GLY A 1054 REMARK 465 SER A 1055 REMARK 465 HIS A 1056 REMARK 465 HIS A 1057 REMARK 465 HIS A 1058 REMARK 465 HIS A 1059 REMARK 465 HIS A 1060 REMARK 465 HIS A 1061 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 338 93.51 -56.13 REMARK 500 LEU A 461 52.25 -96.62 REMARK 500 LEU A 525 27.13 -145.65 REMARK 500 ASP A 893 -10.17 73.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 6H2X A 333 526 UNP P22523 MUKB_ECOLI 333 526 DBREF 6H2X A 893 1053 UNP P22523 MUKB_ECOLI 893 1053 SEQADV 6H2X SER A 527 UNP P22523 LINKER SEQADV 6H2X GLY A 528 UNP P22523 LINKER SEQADV 6H2X GLY A 529 UNP P22523 LINKER SEQADV 6H2X SER A 530 UNP P22523 LINKER SEQADV 6H2X GLY A 1054 UNP P22523 EXPRESSION TAG SEQADV 6H2X SER A 1055 UNP P22523 EXPRESSION TAG SEQADV 6H2X HIS A 1056 UNP P22523 EXPRESSION TAG SEQADV 6H2X HIS A 1057 UNP P22523 EXPRESSION TAG SEQADV 6H2X HIS A 1058 UNP P22523 EXPRESSION TAG SEQADV 6H2X HIS A 1059 UNP P22523 EXPRESSION TAG SEQADV 6H2X HIS A 1060 UNP P22523 EXPRESSION TAG SEQADV 6H2X HIS A 1061 UNP P22523 EXPRESSION TAG SEQRES 1 A 367 ALA SER ASP HIS LEU ASN LEU VAL GLN THR ALA LEU ARG SEQRES 2 A 367 GLN GLN GLU LYS ILE GLU ARG TYR GLU ALA ASP LEU ASP SEQRES 3 A 367 GLU LEU GLN ILE ARG LEU GLU GLU GLN ASN GLU VAL VAL SEQRES 4 A 367 ALA GLU ALA ILE GLU ARG GLN GLN GLU ASN GLU ALA ARG SEQRES 5 A 367 ALA GLU ALA ALA GLU LEU GLU VAL ASP GLU LEU LYS SER SEQRES 6 A 367 GLN LEU ALA ASP TYR GLN GLN ALA LEU ASP VAL GLN GLN SEQRES 7 A 367 THR ARG ALA ILE GLN TYR ASN GLN ALA ILE ALA ALA LEU SEQRES 8 A 367 ASN ARG ALA LYS GLU LEU CYS HIS LEU PRO ASP LEU THR SEQRES 9 A 367 ALA ASP CYS ALA ALA GLU TRP LEU GLU THR PHE GLN ALA SEQRES 10 A 367 LYS GLU LEU GLU ALA THR GLU LYS MSE LEU SER LEU GLU SEQRES 11 A 367 GLN LYS MSE SER MSE ALA GLN THR ALA HIS SER GLN PHE SEQRES 12 A 367 GLU GLN ALA TYR GLN LEU VAL VAL ALA ILE ASN GLY PRO SEQRES 13 A 367 LEU ALA ARG ASN GLU ALA TRP ASP VAL ALA ARG GLU LEU SEQRES 14 A 367 LEU ARG GLU GLY VAL ASP GLN ARG HIS LEU ALA GLU GLN SEQRES 15 A 367 VAL GLN PRO LEU ARG MSE ARG LEU SER GLU LEU GLU SER SEQRES 16 A 367 GLY GLY SER ASP ARG VAL ASP GLU ILE ARG GLU ARG LEU SEQRES 17 A 367 ASP GLU ALA GLN GLU ALA ALA ARG PHE VAL GLN GLN PHE SEQRES 18 A 367 GLY ASN GLN LEU ALA LYS LEU GLU PRO ILE VAL SER VAL SEQRES 19 A 367 LEU GLN SER ASP PRO GLU GLN PHE GLU GLN LEU LYS GLU SEQRES 20 A 367 ASP TYR ALA TYR SER GLN GLN MSE GLN ARG ASP ALA ARG SEQRES 21 A 367 GLN GLN ALA PHE ALA LEU THR GLU VAL VAL GLN ARG ARG SEQRES 22 A 367 ALA HIS PHE SER TYR SER ASP SER ALA GLU MSE LEU SER SEQRES 23 A 367 GLY ASN SER ASP LEU ASN GLU LYS LEU ARG GLU ARG LEU SEQRES 24 A 367 GLU GLN ALA GLU ALA GLU ARG THR ARG ALA ARG GLU ALA SEQRES 25 A 367 LEU ARG GLY HIS ALA ALA GLN LEU SER GLN TYR ASN GLN SEQRES 26 A 367 VAL LEU ALA SER LEU LYS SER SER TYR ASP THR LYS LYS SEQRES 27 A 367 GLU LEU LEU ASN ASP LEU GLN ARG GLU LEU GLN ASP ILE SEQRES 28 A 367 GLY VAL ARG ALA ASP SER GLY ALA GLY SER HIS HIS HIS SEQRES 29 A 367 HIS HIS HIS MODRES 6H2X MSE A 458 MET MODIFIED RESIDUE MODRES 6H2X MSE A 465 MET MODIFIED RESIDUE MODRES 6H2X MSE A 467 MET MODIFIED RESIDUE MODRES 6H2X MSE A 520 MET MODIFIED RESIDUE MODRES 6H2X MSE A 949 MET MODIFIED RESIDUE MODRES 6H2X MSE A 978 MET MODIFIED RESIDUE HET MSE A 458 17 HET MSE A 465 17 HET MSE A 467 17 HET MSE A 520 17 HET MSE A 949 17 HET MSE A 978 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 HOH *4(H2 O) HELIX 1 AA1 ASN A 338 CYS A 430 1 93 HELIX 2 AA2 CYS A 439 LEU A 461 1 23 HELIX 3 AA3 GLU A 462 ASN A 486 1 25 HELIX 4 AA4 ALA A 490 ASN A 492 5 3 HELIX 5 AA5 GLU A 493 GLU A 513 1 21 HELIX 6 AA6 GLN A 514 GLU A 524 1 11 HELIX 7 AA7 ASP A 893 LYS A 921 1 29 HELIX 8 AA8 VAL A 926 SER A 931 5 6 HELIX 9 AA9 PRO A 933 ARG A 966 1 34 HELIX 10 AB1 ARG A 967 SER A 971 5 5 HELIX 11 AB2 TYR A 972 MSE A 978 1 7 HELIX 12 AB3 MSE A 978 GLY A 1046 1 69 LINK C LYS A 457 N MSE A 458 1555 1555 1.33 LINK C MSE A 458 N LEU A 459 1555 1555 1.34 LINK C LYS A 464 N MSE A 465 1555 1555 1.33 LINK C MSE A 465 N SER A 466 1555 1555 1.33 LINK C SER A 466 N MSE A 467 1555 1555 1.33 LINK C MSE A 467 N ALA A 468 1555 1555 1.34 LINK C ARG A 519 N MSE A 520 1555 1555 1.33 LINK C MSE A 520 N ARG A 521 1555 1555 1.33 LINK C GLN A 948 N MSE A 949 1555 1555 1.33 LINK C MSE A 949 N GLN A 950 1555 1555 1.34 LINK C GLU A 977 N MSE A 978 1555 1555 1.33 LINK C MSE A 978 N LEU A 979 1555 1555 1.33 CRYST1 81.122 35.036 81.713 90.00 93.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012327 0.000000 0.000775 0.00000 SCALE2 0.000000 0.028542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012262 0.00000