HEADER IMMUNE SYSTEM 18-JUL-18 6H3H TITLE FAB FRAGMENT OF ANTIBODY AGAINST FULLERENE C60 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-FULLERENE ANTIBODY FAB FRAGMENT HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ANTI-FULLERENE ANTIBODY FAB FRAGMENT LIGHT CHAIN; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 ORGAN: SPLEEN; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_TAXID: 10090; SOURCE 8 ORGAN: SPLEEN KEYWDS ANTIBODY FAB FULLERENE C60, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.M.OSIPOV,T.V.TIKHONOVA REVDAT 2 17-JAN-24 6H3H 1 REMARK REVDAT 1 15-MAY-19 6H3H 0 JRNL AUTH E.M.OSIPOV,O.D.HENDRICKSON,T.V.TIKHONOVA,A.V.ZHERDEV, JRNL AUTH 2 O.N.SOLOPOVA,P.G.SVESHNIKOV,B.B.DZANTIEV,V.O.POPOV JRNL TITL STRUCTURE OF THE ANTI-C60 FULLERENE ANTIBODY FAB FRAGMENT: JRNL TITL 2 STRUCTURAL DETERMINANTS OF FULLERENE BINDING. JRNL REF ACTA NATURAE V. 11 58 2019 JRNL REFN ISSN 2075-8251 JRNL PMID 31024749 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 66144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3520 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4553 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 456 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -1.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6759 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9256 ; 1.911 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 876 ; 7.237 ; 5.011 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;34.691 ;24.174 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1007 ;14.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;22.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1080 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5013 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3473 ; 2.705 ; 2.907 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4336 ; 3.786 ; 4.334 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3286 ; 3.390 ; 3.108 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10059 ; 6.271 ;39.594 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX SX-165MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS V2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE V2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 28.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1MFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % W/V PEG 3350, 0.2 M (NH4)2SO4, REMARK 280 0.1 M BIS-TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 69.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 135 REMARK 465 ASP C 136 REMARK 465 THR C 137 REMARK 465 THR C 138 REMARK 465 GLY C 139 REMARK 465 GLY C 220 REMARK 465 PRO C 221 REMARK 465 SER C 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 65 NE CZ NH1 NH2 REMARK 470 ARG A 102 CD NE CZ NH1 NH2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 SER A 191 OG REMARK 470 LYS A 211 CE NZ REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 LEU B 45 CG CD1 CD2 REMARK 470 GLU B 189 OE1 OE2 REMARK 470 GLN C 1 CG CD OE1 NE2 REMARK 470 GLN C 62 CG CD OE1 NE2 REMARK 470 LYS C 74 CD CE NZ REMARK 470 GLU C 89 CG CD OE1 OE2 REMARK 470 LYS C 121 CE NZ REMARK 470 SER C 178 OG REMARK 470 SER C 191 OG REMARK 470 GLN D 1 CG CD OE1 NE2 REMARK 470 ARG D 186 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 77 CA SER A 77 CB 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 53 -52.09 72.86 REMARK 500 ASN B 54 11.94 -143.00 REMARK 500 SER B 95 -43.56 74.63 REMARK 500 ASN B 96 15.91 -151.75 REMARK 500 VAL C 133 -69.40 9.83 REMARK 500 SER C 178 -115.15 53.76 REMARK 500 THR D 53 -51.19 73.42 REMARK 500 ALA D 86 -175.88 -173.29 REMARK 500 SER D 95 -54.43 71.91 REMARK 500 ASN D 96 13.50 -147.26 REMARK 500 LEU D 109 97.57 -59.27 REMARK 500 CYS D 214 -137.32 -128.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 305 DBREF 6H3H A 1 222 PDB 6H3H 6H3H 1 222 DBREF 6H3H B 1 215 PDB 6H3H 6H3H 1 215 DBREF 6H3H C 1 222 PDB 6H3H 6H3H 1 222 DBREF 6H3H D 1 215 PDB 6H3H 6H3H 1 215 SEQRES 1 A 222 GLN VAL GLN LEU GLN GLN SER ALA ALA GLU LEU ALA ARG SEQRES 2 A 222 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 A 222 TYR THR PHE THR ARG TYR THR MET HIS TRP ILE LYS GLN SEQRES 4 A 222 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 A 222 PRO SER SER GLY TYR THR GLU TYR ASN GLN LYS PHE ARG SEQRES 6 A 222 ASP LYS THR THR LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 A 222 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 A 222 ALA VAL TYR TYR CYS ALA ARG GLY ASP TYR ARG TYR GLY SEQRES 9 A 222 GLY THR ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 222 SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 A 222 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 A 222 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 A 222 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 A 222 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 A 222 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 A 222 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 A 222 SER THR LYS VAL ASP LYS LYS ILE ASP PRO ALA GLY PRO SEQRES 18 A 222 SER SEQRES 1 B 215 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 B 215 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 B 215 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 B 215 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 B 215 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 B 215 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE THR SEQRES 7 B 215 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 B 215 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 B 215 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 B 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 B 215 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 B 215 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 B 215 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 B 215 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 B 215 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 B 215 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 B 215 LEU SER ARG ALA ASP CYS SER SEQRES 1 C 222 GLN VAL GLN LEU GLN GLN SER ALA ALA GLU LEU ALA ARG SEQRES 2 C 222 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 C 222 TYR THR PHE THR ARG TYR THR MET HIS TRP ILE LYS GLN SEQRES 4 C 222 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 C 222 PRO SER SER GLY TYR THR GLU TYR ASN GLN LYS PHE ARG SEQRES 6 C 222 ASP LYS THR THR LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 C 222 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 C 222 ALA VAL TYR TYR CYS ALA ARG GLY ASP TYR ARG TYR GLY SEQRES 9 C 222 GLY THR ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 C 222 SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 C 222 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 C 222 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 C 222 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 C 222 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 C 222 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 C 222 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 C 222 SER THR LYS VAL ASP LYS LYS ILE ASP PRO ALA GLY PRO SEQRES 18 C 222 SER SEQRES 1 D 215 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 D 215 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 D 215 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 D 215 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 D 215 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 D 215 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE THR SEQRES 7 D 215 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 D 215 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 D 215 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 D 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 D 215 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 D 215 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 D 215 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 D 215 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 D 215 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 D 215 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 D 215 LEU SER ARG ALA ASP CYS SER HET GOL A 301 6 HET GOL B 301 6 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 C 301 5 HET GOL D 301 6 HET GOL D 302 6 HET SO4 D 303 5 HET SO4 D 304 5 HET SO4 D 305 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 SO4 6(O4 S 2-) FORMUL 15 HOH *456(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 ASN A 61 ASP A 66 1 6 HELIX 3 AA3 LYS A 74 SER A 76 5 3 HELIX 4 AA4 THR A 87 SER A 91 5 5 HELIX 5 AA5 SER A 162 SER A 164 5 3 HELIX 6 AA6 PRO A 206 SER A 209 5 4 HELIX 7 AA7 THR B 30 TYR B 34 5 5 HELIX 8 AA8 GLN B 81 GLU B 85 5 5 HELIX 9 AA9 SER B 124 GLU B 129 1 6 HELIX 10 AB1 ALA B 185 ARG B 190 1 6 HELIX 11 AB2 THR C 28 TYR C 32 5 5 HELIX 12 AB3 ASN C 61 ASP C 66 1 6 HELIX 13 AB4 THR C 87 SER C 91 5 5 HELIX 14 AB5 SER C 162 SER C 164 5 3 HELIX 15 AB6 PRO C 206 SER C 209 5 4 HELIX 16 AB7 THR D 30 TYR D 34 5 5 HELIX 17 AB8 GLN D 81 GLU D 85 5 5 HELIX 18 AB9 SER D 124 GLU D 129 1 6 HELIX 19 AC1 ALA D 185 ARG D 190 1 6 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N GLN A 5 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O MET A 81 N MET A 20 SHEET 4 AA1 4 THR A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 GLU A 10 ALA A 12 0 SHEET 2 AA2 6 THR A 113 VAL A 117 1 O THR A 116 N ALA A 12 SHEET 3 AA2 6 ALA A 92 ASP A 100 -1 N TYR A 94 O THR A 113 SHEET 4 AA2 6 THR A 33 ARG A 40 -1 N HIS A 35 O ALA A 97 SHEET 5 AA2 6 GLY A 44 ILE A 51 -1 O ILE A 48 N TRP A 36 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O GLU A 59 N TYR A 50 SHEET 1 AA3 4 GLU A 10 ALA A 12 0 SHEET 2 AA3 4 THR A 113 VAL A 117 1 O THR A 116 N ALA A 12 SHEET 3 AA3 4 ALA A 92 ASP A 100 -1 N TYR A 94 O THR A 113 SHEET 4 AA3 4 GLY A 105 TRP A 109 -1 O TYR A 108 N ARG A 98 SHEET 1 AA4 4 SER A 126 LEU A 130 0 SHEET 2 AA4 4 SER A 141 TYR A 151 -1 O LEU A 147 N TYR A 128 SHEET 3 AA4 4 LEU A 180 THR A 190 -1 O TYR A 181 N TYR A 151 SHEET 4 AA4 4 VAL A 169 THR A 171 -1 N HIS A 170 O SER A 186 SHEET 1 AA5 4 SER A 126 LEU A 130 0 SHEET 2 AA5 4 SER A 141 TYR A 151 -1 O LEU A 147 N TYR A 128 SHEET 3 AA5 4 LEU A 180 THR A 190 -1 O TYR A 181 N TYR A 151 SHEET 4 AA5 4 VAL A 175 GLN A 177 -1 N GLN A 177 O LEU A 180 SHEET 1 AA6 3 THR A 157 TRP A 160 0 SHEET 2 AA6 3 THR A 200 HIS A 205 -1 O ASN A 202 N THR A 159 SHEET 3 AA6 3 THR A 210 LYS A 215 -1 O VAL A 212 N VAL A 203 SHEET 1 AA7 4 VAL B 4 GLN B 6 0 SHEET 2 AA7 4 VAL B 18 SER B 24 -1 O ARG B 23 N THR B 5 SHEET 3 AA7 4 LYS B 72 ILE B 77 -1 O LEU B 75 N LEU B 20 SHEET 4 AA7 4 PHE B 64 ILE B 69 -1 N ILE B 69 O LYS B 72 SHEET 1 AA8 6 ALA B 9 THR B 12 0 SHEET 2 AA8 6 THR B 104 VAL B 108 1 O THR B 107 N LEU B 10 SHEET 3 AA8 6 ALA B 86 TRP B 93 -1 N ALA B 86 O LEU B 106 SHEET 4 AA8 6 ASN B 36 LYS B 41 -1 N ASN B 36 O ALA B 91 SHEET 5 AA8 6 LEU B 45 GLY B 51 -1 O LEU B 45 N LYS B 41 SHEET 6 AA8 6 ASN B 55 ARG B 56 -1 O ASN B 55 N GLY B 51 SHEET 1 AA9 4 ALA B 9 THR B 12 0 SHEET 2 AA9 4 THR B 104 VAL B 108 1 O THR B 107 N LEU B 10 SHEET 3 AA9 4 ALA B 86 TRP B 93 -1 N ALA B 86 O LEU B 106 SHEET 4 AA9 4 TRP B 98 PHE B 100 -1 O VAL B 99 N LEU B 92 SHEET 1 AB1 4 SER B 117 PHE B 121 0 SHEET 2 AB1 4 LYS B 132 PHE B 142 -1 O VAL B 136 N PHE B 121 SHEET 3 AB1 4 TYR B 175 THR B 184 -1 O SER B 179 N CYS B 137 SHEET 4 AB1 4 MET B 162 THR B 164 -1 N GLU B 163 O TYR B 180 SHEET 1 AB2 4 SER B 117 PHE B 121 0 SHEET 2 AB2 4 LYS B 132 PHE B 142 -1 O VAL B 136 N PHE B 121 SHEET 3 AB2 4 TYR B 175 THR B 184 -1 O SER B 179 N CYS B 137 SHEET 4 AB2 4 SER B 168 LYS B 169 -1 N SER B 168 O MET B 176 SHEET 1 AB3 4 THR B 156 VAL B 158 0 SHEET 2 AB3 4 THR B 148 VAL B 153 -1 N VAL B 153 O THR B 156 SHEET 3 AB3 4 SER B 193 HIS B 200 -1 O GLN B 197 N ASP B 150 SHEET 4 AB3 4 HIS B 203 SER B 210 -1 O VAL B 205 N VAL B 198 SHEET 1 AB4 4 GLN C 3 GLN C 6 0 SHEET 2 AB4 4 VAL C 18 SER C 25 -1 O LYS C 23 N GLN C 5 SHEET 3 AB4 4 THR C 78 LEU C 83 -1 O LEU C 83 N VAL C 18 SHEET 4 AB4 4 THR C 68 ASP C 73 -1 N THR C 71 O TYR C 80 SHEET 1 AB5 6 GLU C 10 ALA C 12 0 SHEET 2 AB5 6 THR C 113 VAL C 117 1 O THR C 116 N ALA C 12 SHEET 3 AB5 6 ALA C 92 ASP C 100 -1 N ALA C 92 O VAL C 115 SHEET 4 AB5 6 THR C 33 ARG C 40 -1 N ILE C 37 O TYR C 95 SHEET 5 AB5 6 GLY C 44 ILE C 51 -1 O ILE C 48 N TRP C 36 SHEET 6 AB5 6 THR C 58 TYR C 60 -1 O GLU C 59 N TYR C 50 SHEET 1 AB6 4 GLU C 10 ALA C 12 0 SHEET 2 AB6 4 THR C 113 VAL C 117 1 O THR C 116 N ALA C 12 SHEET 3 AB6 4 ALA C 92 ASP C 100 -1 N ALA C 92 O VAL C 115 SHEET 4 AB6 4 GLY C 105 TRP C 109 -1 O TYR C 108 N ARG C 98 SHEET 1 AB7 4 SER C 126 LEU C 130 0 SHEET 2 AB7 4 VAL C 142 TYR C 151 -1 O LYS C 149 N SER C 126 SHEET 3 AB7 4 LEU C 180 VAL C 189 -1 O LEU C 183 N VAL C 148 SHEET 4 AB7 4 VAL C 169 THR C 171 -1 N HIS C 170 O SER C 186 SHEET 1 AB8 4 SER C 126 LEU C 130 0 SHEET 2 AB8 4 VAL C 142 TYR C 151 -1 O LYS C 149 N SER C 126 SHEET 3 AB8 4 LEU C 180 VAL C 189 -1 O LEU C 183 N VAL C 148 SHEET 4 AB8 4 VAL C 175 GLN C 177 -1 N GLN C 177 O LEU C 180 SHEET 1 AB9 3 THR C 157 TRP C 160 0 SHEET 2 AB9 3 THR C 200 HIS C 205 -1 O ASN C 202 N THR C 159 SHEET 3 AB9 3 THR C 210 LYS C 215 -1 O THR C 210 N HIS C 205 SHEET 1 AC1 4 VAL D 4 GLN D 6 0 SHEET 2 AC1 4 THR D 17 SER D 24 -1 O ARG D 23 N THR D 5 SHEET 3 AC1 4 LYS D 72 THR D 78 -1 O LEU D 75 N LEU D 20 SHEET 4 AC1 4 PHE D 64 ILE D 69 -1 N SER D 67 O ALA D 74 SHEET 1 AC2 6 ALA D 9 THR D 12 0 SHEET 2 AC2 6 THR D 104 VAL D 108 1 O THR D 107 N LEU D 10 SHEET 3 AC2 6 ALA D 86 TRP D 93 -1 N ALA D 86 O LEU D 106 SHEET 4 AC2 6 ASN D 36 LYS D 41 -1 N GLU D 40 O ILE D 87 SHEET 5 AC2 6 LEU D 45 GLY D 51 -1 O LEU D 45 N LYS D 41 SHEET 6 AC2 6 ASN D 55 ARG D 56 -1 O ASN D 55 N GLY D 51 SHEET 1 AC3 4 ALA D 9 THR D 12 0 SHEET 2 AC3 4 THR D 104 VAL D 108 1 O THR D 107 N LEU D 10 SHEET 3 AC3 4 ALA D 86 TRP D 93 -1 N ALA D 86 O LEU D 106 SHEET 4 AC3 4 TRP D 98 PHE D 100 -1 O VAL D 99 N LEU D 92 SHEET 1 AC4 4 SER D 117 PHE D 121 0 SHEET 2 AC4 4 LYS D 132 PHE D 142 -1 O VAL D 136 N PHE D 121 SHEET 3 AC4 4 TYR D 175 THR D 184 -1 O LEU D 183 N ALA D 133 SHEET 4 AC4 4 MET D 162 THR D 164 -1 N GLU D 163 O TYR D 180 SHEET 1 AC5 4 SER D 117 PHE D 121 0 SHEET 2 AC5 4 LYS D 132 PHE D 142 -1 O VAL D 136 N PHE D 121 SHEET 3 AC5 4 TYR D 175 THR D 184 -1 O LEU D 183 N ALA D 133 SHEET 4 AC5 4 SER D 168 LYS D 169 -1 N SER D 168 O MET D 176 SHEET 1 AC6 4 THR D 156 PRO D 157 0 SHEET 2 AC6 4 THR D 148 VAL D 153 -1 N VAL D 153 O THR D 156 SHEET 3 AC6 4 TYR D 194 HIS D 200 -1 O GLN D 197 N ASP D 150 SHEET 4 AC6 4 HIS D 203 LEU D 209 -1 O VAL D 205 N VAL D 198 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 2 CYS A 134 CYS B 214 1555 1555 2.06 SSBOND 3 CYS A 146 CYS A 201 1555 1555 2.08 SSBOND 4 CYS B 22 CYS B 90 1555 1555 1.98 SSBOND 5 CYS B 137 CYS B 196 1555 1555 2.01 SSBOND 6 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 7 CYS C 134 CYS D 214 1555 1555 2.06 SSBOND 8 CYS C 146 CYS C 201 1555 1555 2.02 SSBOND 9 CYS D 22 CYS D 90 1555 1555 2.09 SSBOND 10 CYS D 137 CYS D 196 1555 1555 2.03 CISPEP 1 PHE A 152 PRO A 153 0 -8.24 CISPEP 2 GLU A 154 PRO A 155 0 4.56 CISPEP 3 TRP A 194 PRO A 195 0 20.14 CISPEP 4 TYR B 143 PRO B 144 0 -1.01 CISPEP 5 PHE C 152 PRO C 153 0 -5.44 CISPEP 6 GLU C 154 PRO C 155 0 3.76 CISPEP 7 TRP C 194 PRO C 195 0 9.39 CISPEP 8 TYR D 143 PRO D 144 0 5.32 SITE 1 AC1 6 LYS A 38 LYS A 63 PHE A 64 ASP A 90 SITE 2 AC1 6 HOH A 430 HOH A 465 SITE 1 AC2 5 GLN B 39 LYS B 41 GLY B 59 PRO B 61 SITE 2 AC2 5 HOH B 470 SITE 1 AC3 2 ARG B 23 LYS B 72 SITE 1 AC4 3 LYS A 63 PRO B 61 ALA B 62 SITE 1 AC5 7 TYR C 27 THR C 28 ARG C 31 TYR C 32 SITE 2 AC5 7 HOH C 412 HOH C 428 HOH C 440 SITE 1 AC6 9 LYS A 19 TYR A 80 ARG D 23 ILE D 69 SITE 2 AC6 9 GLY D 70 ASP D 71 LYS D 72 HOH D 404 SITE 3 AC6 9 HOH D 469 SITE 1 AC7 5 GLN D 39 LYS D 41 THR D 47 PRO D 61 SITE 2 AC7 5 HOH D 461 SITE 1 AC8 5 SER C 196 GLN C 197 SER C 198 ARG D 190 SITE 2 AC8 5 HIS D 191 SITE 1 AC9 3 ASP D 154 GLY D 155 SER D 193 SITE 1 AD1 3 THR D 184 ARG D 186 ARG D 190 CRYST1 40.330 138.180 83.530 90.00 91.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024795 0.000000 0.000803 0.00000 SCALE2 0.000000 0.007237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011978 0.00000