HEADER TRANSFERASE 20-JUL-18 6H45 TITLE CRYSTAL STRUCTURE OF THE HUMAN TGT CATALYTIC SUBUNIT QTRT1 IN COMPLEX TITLE 2 WITH QUEUINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.64; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: QTRT1, TGT, TGUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSGLYCOSYLASE, QUEUINE, TRNA, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JOHANNSSON,P.NEUMANN,R.FICNER REVDAT 2 15-MAR-23 6H45 1 COMPND SOURCE JRNL REMARK REVDAT 2 2 1 HET HETNAM HETSYN FORMUL REVDAT 2 3 1 ATOM REVDAT 1 05-SEP-18 6H45 0 JRNL AUTH S.JOHANNSSON,P.NEUMANN,R.FICNER JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN TRNA GUANINE TRANSGLYCOSYLASE JRNL TITL 2 CATALYTIC SUBUNIT QTRT1. JRNL REF BIOMOLECULES V. 8 2018 JRNL REFN ESSN 2218-273X JRNL PMID 30149595 JRNL DOI 10.3390/BIOM8030081 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 32702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1700 - 5.4922 0.99 2795 147 0.1709 0.1891 REMARK 3 2 5.4922 - 4.3602 0.99 2757 145 0.1558 0.1759 REMARK 3 3 4.3602 - 3.8093 0.99 2764 145 0.1623 0.1920 REMARK 3 4 3.8093 - 3.4611 0.99 2726 144 0.1980 0.2625 REMARK 3 5 3.4611 - 3.2131 0.98 2752 145 0.2191 0.2487 REMARK 3 6 3.2131 - 3.0237 0.98 2717 143 0.2442 0.3370 REMARK 3 7 3.0237 - 2.8723 0.99 2731 143 0.2523 0.2804 REMARK 3 8 2.8723 - 2.7473 0.99 2741 144 0.2637 0.3134 REMARK 3 9 2.7473 - 2.6415 0.99 2723 144 0.2711 0.3291 REMARK 3 10 2.6415 - 2.5504 0.88 2452 129 0.2878 0.3691 REMARK 3 11 2.5504 - 2.4706 0.76 2093 111 0.3189 0.4112 REMARK 3 12 2.4706 - 2.4000 0.66 1816 95 0.3260 0.3713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 26.9153 -23.0875 21.3208 REMARK 3 T TENSOR REMARK 3 T11: 0.3144 T22: 0.5167 REMARK 3 T33: 0.3087 T12: 0.0120 REMARK 3 T13: -0.0069 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: -0.0528 L22: 1.5020 REMARK 3 L33: 0.0815 L12: 0.0979 REMARK 3 L13: -0.0180 L23: -0.1549 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.0057 S13: -0.0169 REMARK 3 S21: -0.0173 S22: 0.0153 S23: -0.0056 REMARK 3 S31: 0.0146 S32: 0.1376 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32713 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.328 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.72 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.8 200 MM KBR 200 MM REMARK 280 KSCN 3 % (W/V) PGA-LM 5 % (W/V) PEG 4000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.75000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 79.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 BR BR A 503 LIES ON A SPECIAL POSITION. REMARK 375 BR BR B 804 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 105 NE2 GLN B 110 2.10 REMARK 500 OE1 GLU B 122 NH1 ARG B 180 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 25 -64.97 -95.36 REMARK 500 SER A 26 -167.22 -77.17 REMARK 500 HIS A 100 -153.44 -105.37 REMARK 500 GLN A 202 -161.78 -109.74 REMARK 500 CYS A 280 145.41 -177.11 REMARK 500 ASP A 337 84.86 -153.71 REMARK 500 ARG A 368 31.75 -141.79 REMARK 500 ARG B 25 -67.68 -94.09 REMARK 500 HIS B 100 -155.92 -109.45 REMARK 500 SER B 116 -9.89 67.85 REMARK 500 GLN B 202 -163.26 -108.65 REMARK 500 ASP B 221 53.84 -95.20 REMARK 500 CYS B 280 147.04 -177.16 REMARK 500 LYS B 304 0.14 -69.12 REMARK 500 ASP B 337 83.84 -151.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLU B 805 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 506 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 75 O REMARK 620 2 LEU A 77 O 90.0 REMARK 620 3 ARG A 80 O 136.0 105.6 REMARK 620 4 GLY A 82 O 80.7 136.6 110.4 REMARK 620 5 GLU A 84 OE2 158.9 83.6 65.0 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 317 SG REMARK 620 2 CYS A 319 SG 103.7 REMARK 620 3 CYS A 322 SG 108.0 118.8 REMARK 620 4 HIS A 348 ND1 105.8 114.3 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 808 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 75 O REMARK 620 2 LEU B 77 O 89.4 REMARK 620 3 ARG B 80 O 146.3 109.3 REMARK 620 4 GLY B 82 O 85.0 125.2 104.7 REMARK 620 5 GLU B 84 OE2 150.8 80.2 62.4 79.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 317 SG REMARK 620 2 CYS B 319 SG 102.2 REMARK 620 3 CYS B 322 SG 107.9 116.1 REMARK 620 4 HIS B 348 ND1 105.6 117.9 106.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QEI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QEI B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 809 DBREF 6H45 A 12 403 UNP Q9BXR0 TGT_HUMAN 12 403 DBREF 6H45 B 12 403 UNP Q9BXR0 TGT_HUMAN 12 403 SEQRES 1 A 392 SER ALA PRO ARG ILE MET ARG LEU VAL ALA GLU OCS SER SEQRES 2 A 392 ARG SER ARG ALA ARG ALA GLY GLU LEU TRP LEU PRO HIS SEQRES 3 A 392 GLY THR VAL ALA THR PRO VAL PHE MET PRO VAL GLY THR SEQRES 4 A 392 GLN ALA THR MET LYS GLY ILE THR THR GLU GLN LEU ASP SEQRES 5 A 392 ALA LEU GLY CYS ARG ILE CYS LEU GLY ASN THR TYR HIS SEQRES 6 A 392 LEU GLY LEU ARG PRO GLY PRO GLU LEU ILE GLN LYS ALA SEQRES 7 A 392 ASN GLY LEU HIS GLY PHE MET ASN TRP PRO HIS ASN LEU SEQRES 8 A 392 LEU THR ASP SER GLY GLY PHE GLN MET VAL SER LEU VAL SEQRES 9 A 392 SER LEU SER GLU VAL THR GLU GLU GLY VAL ARG PHE ARG SEQRES 10 A 392 SER PRO TYR ASP GLY ASN GLU THR LEU LEU SER PRO GLU SEQRES 11 A 392 LYS SER VAL GLN ILE GLN ASN ALA LEU GLY SER ASP ILE SEQRES 12 A 392 ILE MET GLN LEU ASP ASP VAL VAL SER SER THR VAL THR SEQRES 13 A 392 GLY PRO ARG VAL GLU GLU ALA MET TYR ARG SER ILE ARG SEQRES 14 A 392 TRP LEU ASP ARG CYS ILE ALA ALA HIS GLN ARG PRO ASP SEQRES 15 A 392 LYS GLN ASN LEU PHE ALA ILE ILE GLN GLY GLY LEU ASP SEQRES 16 A 392 ALA ASP LEU ARG ALA THR CYS LEU GLU GLU MET THR LYS SEQRES 17 A 392 ARG ASP VAL PRO GLY PHE ALA ILE GLY GLY LEU SER GLY SEQRES 18 A 392 GLY GLU SER LYS SER GLN PHE TRP ARG MET VAL ALA LEU SEQRES 19 A 392 SER THR SER ARG LEU PRO LYS ASP LYS PRO ARG TYR LEU SEQRES 20 A 392 MET GLY VAL GLY TYR ALA THR ASP LEU VAL VAL CYS VAL SEQRES 21 A 392 ALA LEU GLY CYS ASP MET PHE ASP CYS VAL PHE PRO THR SEQRES 22 A 392 ARG THR ALA ARG PHE GLY SER ALA LEU VAL PRO THR GLY SEQRES 23 A 392 ASN LEU GLN LEU ARG LYS LYS VAL PHE GLU LYS ASP PHE SEQRES 24 A 392 GLY PRO ILE ASP PRO GLU CYS THR CYS PRO THR CYS GLN SEQRES 25 A 392 LYS HIS SER ARG ALA PHE LEU HIS ALA LEU LEU HIS SER SEQRES 26 A 392 ASP ASN THR ALA ALA LEU HIS HIS LEU THR VAL HIS ASN SEQRES 27 A 392 ILE ALA TYR GLN LEU GLN LEU MET SER ALA VAL ARG THR SEQRES 28 A 392 SER ILE VAL GLU LYS ARG PHE PRO ASP PHE VAL ARG ASP SEQRES 29 A 392 PHE MET GLY ALA MET TYR GLY ASP PRO THR LEU CYS PRO SEQRES 30 A 392 THR TRP ALA THR ASP ALA LEU ALA SER VAL GLY ILE THR SEQRES 31 A 392 LEU GLY SEQRES 1 B 392 SER ALA PRO ARG ILE MET ARG LEU VAL ALA GLU OCS SER SEQRES 2 B 392 ARG SER ARG ALA ARG ALA GLY GLU LEU TRP LEU PRO HIS SEQRES 3 B 392 GLY THR VAL ALA THR PRO VAL PHE MET PRO VAL GLY THR SEQRES 4 B 392 GLN ALA THR MET LYS GLY ILE THR THR GLU GLN LEU ASP SEQRES 5 B 392 ALA LEU GLY CYS ARG ILE CYS LEU GLY ASN THR TYR HIS SEQRES 6 B 392 LEU GLY LEU ARG PRO GLY PRO GLU LEU ILE GLN LYS ALA SEQRES 7 B 392 ASN GLY LEU HIS GLY PHE MET ASN TRP PRO HIS ASN LEU SEQRES 8 B 392 LEU THR ASP SER GLY GLY PHE GLN MET VAL SER LEU VAL SEQRES 9 B 392 SER LEU SER GLU VAL THR GLU GLU GLY VAL ARG PHE ARG SEQRES 10 B 392 SER PRO TYR ASP GLY ASN GLU THR LEU LEU SER PRO GLU SEQRES 11 B 392 LYS SER VAL GLN ILE GLN ASN ALA LEU GLY SER ASP ILE SEQRES 12 B 392 ILE MET GLN LEU ASP ASP VAL VAL SER SER THR VAL THR SEQRES 13 B 392 GLY PRO ARG VAL GLU GLU ALA MET TYR ARG SER ILE ARG SEQRES 14 B 392 TRP LEU ASP ARG CYS ILE ALA ALA HIS GLN ARG PRO ASP SEQRES 15 B 392 LYS GLN ASN LEU PHE ALA ILE ILE GLN GLY GLY LEU ASP SEQRES 16 B 392 ALA ASP LEU ARG ALA THR CYS LEU GLU GLU MET THR LYS SEQRES 17 B 392 ARG ASP VAL PRO GLY PHE ALA ILE GLY GLY LEU SER GLY SEQRES 18 B 392 GLY GLU SER LYS SER GLN PHE TRP ARG MET VAL ALA LEU SEQRES 19 B 392 SER THR SER ARG LEU PRO LYS ASP LYS PRO ARG TYR LEU SEQRES 20 B 392 MET GLY VAL GLY TYR ALA THR ASP LEU VAL VAL CYS VAL SEQRES 21 B 392 ALA LEU GLY CYS ASP MET PHE ASP CYS VAL PHE PRO THR SEQRES 22 B 392 ARG THR ALA ARG PHE GLY SER ALA LEU VAL PRO THR GLY SEQRES 23 B 392 ASN LEU GLN LEU ARG LYS LYS VAL PHE GLU LYS ASP PHE SEQRES 24 B 392 GLY PRO ILE ASP PRO GLU CYS THR CYS PRO THR CYS GLN SEQRES 25 B 392 LYS HIS SER ARG ALA PHE LEU HIS ALA LEU LEU HIS SER SEQRES 26 B 392 ASP ASN THR ALA ALA LEU HIS HIS LEU THR VAL HIS ASN SEQRES 27 B 392 ILE ALA TYR GLN LEU GLN LEU MET SER ALA VAL ARG THR SEQRES 28 B 392 SER ILE VAL GLU LYS ARG PHE PRO ASP PHE VAL ARG ASP SEQRES 29 B 392 PHE MET GLY ALA MET TYR GLY ASP PRO THR LEU CYS PRO SEQRES 30 B 392 THR TRP ALA THR ASP ALA LEU ALA SER VAL GLY ILE THR SEQRES 31 B 392 LEU GLY MODRES 6H45 OCS A 23 CYS MODIFIED RESIDUE MODRES 6H45 OCS B 23 CYS MODIFIED RESIDUE HET OCS A 23 9 HET OCS B 23 9 HET QEI A 501 20 HET ZN A 502 1 HET BR A 503 1 HET CL A 504 1 HET CL A 505 1 HET K A 506 1 HET BR A 507 1 HET CL B 801 1 HET QEI B 802 20 HET ZN B 803 1 HET BR B 804 1 HET GLU B 805 9 HET CL B 806 1 HET CL B 807 1 HET K B 808 1 HET BR B 809 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM QEI 2-AMINO-5-({[(1S,4S,5R)-4,5-DIHYDROXYCYCLOPENT-2-EN-1- HETNAM 2 QEI YL]AMINO}METHYL)-3,7-DIHYDRO-4H-PYRROLO[2,3- HETNAM 3 QEI D]PYRIMIDIN-4-ONE HETNAM ZN ZINC ION HETNAM BR BROMIDE ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM GLU GLUTAMIC ACID HETSYN QEI QUEUINE FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 QEI 2(C12 H15 N5 O3) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 BR 4(BR 1-) FORMUL 6 CL 5(CL 1-) FORMUL 8 K 2(K 1+) FORMUL 14 GLU C5 H9 N O4 FORMUL 19 HOH *103(H2 O) HELIX 1 AA1 THR A 58 GLY A 66 1 9 HELIX 2 AA2 ASN A 90 ASN A 97 1 8 HELIX 3 AA3 GLY A 107 VAL A 115 1 9 HELIX 4 AA4 SER A 139 GLY A 151 1 13 HELIX 5 AA5 GLY A 168 HIS A 189 1 22 HELIX 6 AA6 ASP A 206 THR A 218 1 13 HELIX 7 AA7 SER A 235 LEU A 250 1 16 HELIX 8 AA8 TYR A 263 LEU A 273 1 11 HELIX 9 AA9 VAL A 281 PHE A 289 1 9 HELIX 10 AB1 LYS A 303 GLU A 307 5 5 HELIX 11 AB2 CYS A 319 HIS A 325 1 7 HELIX 12 AB3 SER A 326 ASP A 337 1 12 HELIX 13 AB4 ASP A 337 GLU A 366 1 30 HELIX 14 AB5 ARG A 368 GLY A 382 1 15 HELIX 15 AB6 ASP A 383 CYS A 387 5 5 HELIX 16 AB7 PRO A 388 VAL A 398 1 11 HELIX 17 AB8 THR B 58 LEU B 65 1 8 HELIX 18 AB9 ASN B 90 ASN B 97 1 8 HELIX 19 AC1 GLY B 107 SER B 116 1 10 HELIX 20 AC2 SER B 139 GLY B 151 1 13 HELIX 21 AC3 GLY B 168 HIS B 189 1 22 HELIX 22 AC4 ASP B 206 THR B 218 1 13 HELIX 23 AC5 SER B 235 LEU B 250 1 16 HELIX 24 AC6 TYR B 263 LEU B 273 1 11 HELIX 25 AC7 VAL B 281 PHE B 289 1 9 HELIX 26 AC8 LYS B 303 GLU B 307 5 5 HELIX 27 AC9 CYS B 319 HIS B 325 1 7 HELIX 28 AD1 SER B 326 ASP B 337 1 12 HELIX 29 AD2 ASP B 337 GLU B 366 1 30 HELIX 30 AD3 ARG B 368 GLY B 382 1 15 HELIX 31 AD4 ASP B 383 CYS B 387 5 5 HELIX 32 AD5 PRO B 388 VAL B 398 1 11 SHEET 1 AA1 3 MET A 17 GLU A 22 0 SHEET 2 AA1 3 ARG A 29 LEU A 35 -1 O ALA A 30 N ALA A 21 SHEET 3 AA1 3 GLY A 38 THR A 42 -1 O VAL A 40 N LEU A 33 SHEET 1 AA2 8 VAL A 44 PHE A 45 0 SHEET 2 AA2 8 MET A 277 ASP A 279 1 O PHE A 278 N VAL A 44 SHEET 3 AA2 8 ARG A 256 MET A 259 1 N LEU A 258 O MET A 277 SHEET 4 AA2 8 GLY A 224 ILE A 227 1 N ILE A 227 O TYR A 257 SHEET 5 AA2 8 ASN A 196 ILE A 201 1 N ILE A 201 O ALA A 226 SHEET 6 AA2 8 ILE A 154 MET A 156 1 N ILE A 155 O PHE A 198 SHEET 7 AA2 8 ASN A 101 THR A 104 1 N THR A 104 O ILE A 154 SHEET 8 AA2 8 ILE A 69 LEU A 71 1 N CYS A 70 O LEU A 103 SHEET 1 AA3 3 GLU A 119 THR A 121 0 SHEET 2 AA3 3 GLY A 124 ARG A 128 -1 O ARG A 126 N GLU A 119 SHEET 3 AA3 3 GLU A 135 LEU A 138 -1 O LEU A 138 N VAL A 125 SHEET 1 AA4 2 SER A 291 VAL A 294 0 SHEET 2 AA4 2 GLY A 297 GLN A 300 -1 O GLY A 297 N VAL A 294 SHEET 1 AA5 3 MET B 17 GLU B 22 0 SHEET 2 AA5 3 ARG B 29 LEU B 35 -1 O ALA B 30 N ALA B 21 SHEET 3 AA5 3 GLY B 38 THR B 42 -1 O VAL B 40 N LEU B 33 SHEET 1 AA6 8 VAL B 44 MET B 46 0 SHEET 2 AA6 8 MET B 277 ASP B 279 1 O PHE B 278 N MET B 46 SHEET 3 AA6 8 ARG B 256 LEU B 258 1 N LEU B 258 O MET B 277 SHEET 4 AA6 8 GLY B 224 ILE B 227 1 N ILE B 227 O TYR B 257 SHEET 5 AA6 8 ASN B 196 ILE B 201 1 N ILE B 201 O ALA B 226 SHEET 6 AA6 8 ILE B 154 MET B 156 1 N ILE B 155 O PHE B 198 SHEET 7 AA6 8 ASN B 101 THR B 104 1 N THR B 104 O ILE B 154 SHEET 8 AA6 8 ILE B 69 LEU B 71 1 N CYS B 70 O LEU B 103 SHEET 1 AA7 3 GLU B 119 THR B 121 0 SHEET 2 AA7 3 GLY B 124 ARG B 128 -1 O GLY B 124 N THR B 121 SHEET 3 AA7 3 GLU B 135 LEU B 138 -1 O LEU B 138 N VAL B 125 SHEET 1 AA8 2 SER B 291 VAL B 294 0 SHEET 2 AA8 2 GLY B 297 GLN B 300 -1 O LEU B 299 N ALA B 292 LINK C GLU A 22 N AOCS A 23 1555 1555 1.33 LINK C AOCS A 23 N SER A 24 1555 1555 1.33 LINK C GLU B 22 N AOCS B 23 1555 1555 1.33 LINK C AOCS B 23 N SER B 24 1555 1555 1.33 LINK O TYR A 75 K K A 506 1555 1555 2.67 LINK O LEU A 77 K K A 506 1555 1555 2.57 LINK O ARG A 80 K K A 506 1555 1555 2.56 LINK O GLY A 82 K K A 506 1555 1555 2.65 LINK OE2 GLU A 84 K K A 506 1555 1555 3.00 LINK SG CYS A 317 ZN ZN A 502 1555 1555 2.24 LINK SG CYS A 319 ZN ZN A 502 1555 1555 2.32 LINK SG CYS A 322 ZN ZN A 502 1555 1555 2.37 LINK ND1 HIS A 348 ZN ZN A 502 1555 1555 2.09 LINK O TYR B 75 K K B 808 1555 1555 2.64 LINK O LEU B 77 K K B 808 1555 1555 2.61 LINK O ARG B 80 K K B 808 1555 1555 2.59 LINK O GLY B 82 K K B 808 1555 1555 2.72 LINK OE2 GLU B 84 K K B 808 1555 1555 3.25 LINK SG CYS B 317 ZN ZN B 803 1555 1555 2.36 LINK SG CYS B 319 ZN ZN B 803 1555 1555 2.33 LINK SG CYS B 322 ZN ZN B 803 1555 1555 2.32 LINK ND1 HIS B 348 ZN ZN B 803 1555 1555 2.08 CISPEP 1 THR A 42 PRO A 43 0 7.52 CISPEP 2 THR B 42 PRO B 43 0 6.94 SITE 1 AC1 13 PHE A 109 ASP A 159 VAL A 161 VAL A 162 SITE 2 AC1 13 SER A 163 SER A 164 ILE A 200 GLY A 228 SITE 3 AC1 13 GLY A 229 LEU A 230 SER A 231 GLY A 232 SITE 4 AC1 13 MET A 259 SITE 1 AC2 4 CYS A 317 CYS A 319 CYS A 322 HIS A 348 SITE 1 AC3 2 PHE A 310 SER A 326 SITE 1 AC4 1 ARG B 327 SITE 1 AC5 5 TYR A 75 LEU A 77 ARG A 80 GLY A 82 SITE 2 AC5 5 GLU A 84 SITE 1 AC6 1 CYS A 280 SITE 1 AC7 2 ARG A 327 VAL B 305 SITE 1 AC8 14 PHE B 109 ASP B 159 VAL B 161 VAL B 162 SITE 2 AC8 14 SER B 163 SER B 164 ILE B 200 GLY B 228 SITE 3 AC8 14 GLY B 229 LEU B 230 SER B 231 GLY B 232 SITE 4 AC8 14 MET B 259 HOH B 929 SITE 1 AC9 4 CYS B 317 CYS B 319 CYS B 322 HIS B 348 SITE 1 AD1 2 PHE B 310 SER B 326 SITE 1 AD2 2 GLU B 141 ARG B 184 SITE 1 AD3 1 HOH B 928 SITE 1 AD4 5 TYR B 75 LEU B 77 ARG B 80 GLY B 82 SITE 2 AD4 5 GLU B 84 SITE 1 AD5 1 CYS B 280 CRYST1 127.500 158.860 47.620 90.00 108.19 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007843 0.000000 0.002578 0.00000 SCALE2 0.000000 0.006295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022105 0.00000