HEADER SIGNALING PROTEIN 20-JUL-18 6H46 TITLE HUMAN KRAS IN COMPLEX WITH DARPIN K13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DARPIN K13; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS GTP-ASE, DARPIN, KRAS SIGNALLING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,N.BERY,S.LEGG,J.BREED,K.EMBREY,C.STUBBS,P.KOLASINSKA- AUTHOR 2 ZWIERZ,N.BARRETT,R.MARWOOD,J.WATSON,J.TART,R.OVERMAN,A.MILLER, AUTHOR 3 C.PHILLIPS,R.MINTER,T.H.RABBITTS REVDAT 2 26-JUN-19 6H46 1 JRNL REVDAT 1 24-APR-19 6H46 0 JRNL AUTH N.BERY,S.LEGG,J.DEBRECZENI,J.BREED,K.EMBREY,C.STUBBS, JRNL AUTH 2 P.KOLASINSKA-ZWIERZ,N.BARRETT,R.MARWOOD,J.WATSON,J.TART, JRNL AUTH 3 R.OVERMAN,A.MILLER,C.PHILLIPS,R.MINTER,T.H.RABBITTS JRNL TITL KRAS-SPECIFIC INHIBITION USING A DARPIN BINDING TO A SITE IN JRNL TITL 2 THE ALLOSTERIC LOBE. JRNL REF NAT COMMUN V. 10 2607 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31197133 JRNL DOI 10.1038/S41467-019-10419-2 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1423 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2603 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2391 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3539 ; 1.294 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5542 ; 0.939 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.348 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;35.204 ;25.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;13.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.240 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2908 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 501 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1302 ; 0.557 ; 1.903 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1301 ; 0.549 ; 1.901 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1627 ; 0.997 ; 2.848 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1628 ; 0.997 ; 2.849 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1301 ; 0.524 ; 1.994 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1293 ; 0.524 ; 1.993 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1898 ; 0.914 ; 2.964 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2922 ; 4.281 ;23.460 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2887 ; 4.179 ;23.014 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5583 -1.2367 14.5701 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.0515 REMARK 3 T33: 0.1320 T12: -0.0248 REMARK 3 T13: -0.0726 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.8206 L22: 2.8004 REMARK 3 L33: 3.6540 L12: -0.1677 REMARK 3 L13: -0.7199 L23: -0.1312 REMARK 3 S TENSOR REMARK 3 S11: -0.0719 S12: -0.2289 S13: 0.4779 REMARK 3 S21: 0.2148 S22: 0.0381 S23: -0.1724 REMARK 3 S31: -0.3732 S32: 0.1516 S33: 0.0337 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2608 -24.3313 16.5616 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0297 REMARK 3 T33: 0.0547 T12: 0.0080 REMARK 3 T13: 0.0036 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 4.1993 L22: 2.1674 REMARK 3 L33: 2.2489 L12: 0.5684 REMARK 3 L13: 1.1008 L23: 0.5339 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.1123 S13: -0.1614 REMARK 3 S21: -0.0653 S22: -0.0115 S23: 0.2422 REMARK 3 S31: 0.0818 S32: -0.0518 S33: 0.0324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6H46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 51.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.885 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5-1.0M LITHIUM SULFATE 0.5-1.0M REMARK 280 AMMONIUM SULFATE 100MM TRI-SODIUM CITRATE PH5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.01250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.64750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.64750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.51875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.64750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.64750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.50625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.64750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.64750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.51875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.64750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.64750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.50625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.01250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 HIS A 166 O REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 GLN B 155 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 305 O HOH A 324 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 346 O HOH B 346 8555 1.63 REMARK 500 O HOH A 301 O HOH B 305 6445 1.64 REMARK 500 OE2 GLU B 116 OE2 GLU B 116 8555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 -9.45 125.62 REMARK 500 ILE A 36 -56.00 -133.43 REMARK 500 LYS A 117 32.16 72.13 REMARK 500 ARG A 149 -2.42 75.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 411 DISTANCE = 6.49 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 DBREF 6H46 A 1 166 UNP P01116 RASK_HUMAN 1 166 DBREF 6H46 B 1 156 PDB 6H46 6H46 1 156 SEQADV 6H46 GLY A -2 UNP P01116 EXPRESSION TAG SEQADV 6H46 SER A -1 UNP P01116 EXPRESSION TAG SEQADV 6H46 HIS A 0 UNP P01116 EXPRESSION TAG SEQADV 6H46 VAL A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 169 GLY SER HIS MET THR GLU TYR LYS LEU VAL VAL VAL GLY SEQRES 2 A 169 ALA VAL GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU SEQRES 3 A 169 ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE SEQRES 4 A 169 GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU SEQRES 5 A 169 THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU SEQRES 6 A 169 GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG THR GLY SEQRES 7 A 169 GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SEQRES 8 A 169 SER PHE GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS SEQRES 9 A 169 ARG VAL LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL SEQRES 10 A 169 GLY ASN LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR SEQRES 11 A 169 LYS GLN ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO SEQRES 12 A 169 PHE ILE GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP SEQRES 13 A 169 ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 1 B 156 MET ASP LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA SEQRES 2 B 156 GLY GLN ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY SEQRES 3 B 156 ALA ASP VAL ASN ALA SER ASP ARG TRP GLY TRP THR PRO SEQRES 4 B 156 LEU HIS LEU ALA ALA TRP TRP GLY HIS LEU GLU ILE VAL SEQRES 5 B 156 GLU VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA ALA SEQRES 6 B 156 ASP LEU HIS GLY GLN THR PRO LEU HIS LEU ALA ALA MET SEQRES 7 B 156 VAL GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR SEQRES 8 B 156 GLY ALA ASP VAL ASN ALA LYS ASP THR MET GLY ALA THR SEQRES 9 B 156 PRO LEU HIS LEU ALA ALA GLN SER GLY HIS LEU GLU ILE SEQRES 10 B 156 VAL GLU VAL LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA SEQRES 11 B 156 GLN ASP LYS PHE GLY LYS THR ALA PHE ASP ILE SER ILE SEQRES 12 B 156 ASP ASN GLY ASN GLU ASP LEU ALA GLU ILE LEU GLN LYS HET GDP A 201 28 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *224(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 PHE A 28 TYR A 32 5 5 HELIX 3 AA3 TYR A 64 GLY A 75 1 12 HELIX 4 AA4 ASN A 86 ASP A 105 1 20 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 HIS A 166 1 16 HELIX 7 AA7 ASP B 2 GLY B 14 1 13 HELIX 8 AA8 GLN B 15 ASN B 25 1 11 HELIX 9 AA9 THR B 38 GLY B 47 1 10 HELIX 10 AB1 HIS B 48 HIS B 58 1 11 HELIX 11 AB2 THR B 71 GLY B 80 1 10 HELIX 12 AB3 HIS B 81 TYR B 91 1 11 HELIX 13 AB4 THR B 104 GLY B 113 1 10 HELIX 14 AB5 HIS B 114 ASN B 124 1 11 HELIX 15 AB6 THR B 137 ASN B 145 1 9 HELIX 16 AB7 ASN B 147 LYS B 156 1 10 SHEET 1 AA1 6 ARG A 41 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 GLU A 3 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O GLY A 77 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SITE 1 AC1 28 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 28 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 28 ALA A 59 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC1 28 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC1 28 HOH A 301 HOH A 312 HOH A 324 HOH A 325 SITE 6 AC1 28 HOH A 346 HOH A 348 LEU B 89 GLY B 92 SITE 7 AC1 28 ASN B 124 HOH B 340 HOH B 348 HOH B 361 SITE 1 AC2 5 GLY B 113 LEU B 115 GLU B 116 HOH B 303 SITE 2 AC2 5 HOH B 321 SITE 1 AC3 4 ASP B 33 ARG B 34 HOH B 341 HOH B 352 CRYST1 79.295 79.295 130.025 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007691 0.00000