HEADER RNA BINDING PROTEIN 20-JUL-18 6H4D TITLE CRYSTAL STRUCTURE OF RSGA FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: RSGA, PA4952; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CPGTPASE, RIBOSOME MATURATION FACTOR, YJEQ, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ROCCHIO,D.SANTORELLI,C.TRAVAGLINI-ALLOCATELLI,L.FEDERICI,A.DI AUTHOR 2 MATTEO REVDAT 3 17-JAN-24 6H4D 1 REMARK REVDAT 2 15-JAN-20 6H4D 1 JRNL REVDAT 1 26-JUN-19 6H4D 0 JRNL AUTH S.ROCCHIO,D.SANTORELLI,S.RINALDO,M.FRANCESCHINI,F.MALATESTA, JRNL AUTH 2 F.IMPERI,L.FEDERICI,C.TRAVAGLINI-ALLOCATELLI,A.DI MATTEO JRNL TITL STRUCTURAL AND FUNCTIONAL INVESTIGATION OF THE SMALL JRNL TITL 2 RIBOSOMAL SUBUNIT BIOGENESIS GTPASE A (RSGA) FROM JRNL TITL 3 PSEUDOMONAS AERUGINOSA. JRNL REF FEBS J. V. 286 4245 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31199072 JRNL DOI 10.1111/FEBS.14959 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3032 - 4.9580 1.00 2515 130 0.2416 0.2379 REMARK 3 2 4.9580 - 3.9359 1.00 2357 130 0.2240 0.2817 REMARK 3 3 3.9359 - 3.4386 1.00 2317 124 0.2605 0.3421 REMARK 3 4 3.4386 - 3.1243 1.00 2284 136 0.2814 0.3668 REMARK 3 5 3.1243 - 2.9004 1.00 2292 126 0.3112 0.3882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2145 REMARK 3 ANGLE : 0.974 2913 REMARK 3 CHIRALITY : 0.039 326 REMARK 3 PLANARITY : 0.005 385 REMARK 3 DIHEDRAL : 15.501 791 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.3231 -15.5124 15.8311 REMARK 3 T TENSOR REMARK 3 T11: 0.5346 T22: 0.3845 REMARK 3 T33: 0.5306 T12: -0.0646 REMARK 3 T13: -0.0381 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.5484 L22: 2.3530 REMARK 3 L33: 2.3690 L12: -0.6272 REMARK 3 L13: -0.7351 L23: 0.2385 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: -0.0787 S13: -0.2026 REMARK 3 S21: -0.0583 S22: -0.2055 S23: 0.4681 REMARK 3 S31: 0.0400 S32: 0.0182 S33: 0.0724 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.20 REMARK 200 R MERGE FOR SHELL (I) : 1.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RCN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYACRYLIC ACID 5100 SODIUM SALT, REMARK 280 0.1 M HEPES PH 7.5, 5% PEG 200, 0.02 M MAGNESIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 73.20250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.20250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.20250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.20250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.20250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.20250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 73.20250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 73.20250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 73.20250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 73.20250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 73.20250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 73.20250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 73.20250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 73.20250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 73.20250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 73.20250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 73.20250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 73.20250 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 109.80375 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 36.60125 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.60125 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 109.80375 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 109.80375 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 109.80375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 36.60125 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 36.60125 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 109.80375 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 36.60125 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 109.80375 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 36.60125 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 109.80375 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 36.60125 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 36.60125 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 36.60125 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 109.80375 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 36.60125 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 109.80375 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 109.80375 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 109.80375 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 36.60125 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 36.60125 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 109.80375 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 109.80375 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 36.60125 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 36.60125 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 36.60125 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 36.60125 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 109.80375 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 36.60125 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 109.80375 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 36.60125 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 109.80375 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 109.80375 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 109.80375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 HIS A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 ARG A 8 REMARK 465 ARG A 9 REMARK 465 GLN A 10 REMARK 465 SER A 11 REMARK 465 TRP A 12 REMARK 465 ARG A 13 REMARK 465 ILE A 14 REMARK 465 GLU A 15 REMARK 465 LYS A 16 REMARK 465 ILE A 17 REMARK 465 GLN A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ARG A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ARG A 27 REMARK 465 ARG A 28 REMARK 465 GLU A 29 REMARK 465 SER A 30 REMARK 465 ARG A 31 REMARK 465 ALA A 32 REMARK 465 VAL A 33 REMARK 465 GLU A 34 REMARK 465 GLU A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 37 REMARK 465 GLY A 38 REMARK 465 GLY A 39 REMARK 465 ASN A 90 REMARK 465 GLN A 91 REMARK 465 VAL A 230 REMARK 465 ASP A 231 REMARK 465 THR A 232 REMARK 465 ARG A 233 REMARK 465 VAL A 234 REMARK 465 GLY A 235 REMARK 465 ASP A 236 REMARK 465 LEU A 237 REMARK 465 SER A 238 REMARK 465 THR A 239 REMARK 465 VAL A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 LYS A 243 REMARK 465 GLY A 244 REMARK 465 THR A 245 REMARK 465 HIS A 246 REMARK 465 THR A 247 REMARK 465 THR A 248 REMARK 465 THR A 249 REMARK 465 GLU A 336 REMARK 465 THR A 337 REMARK 465 ASP A 338 REMARK 465 TYR A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 53 49.43 -93.29 REMARK 500 PRO A 76 172.86 -56.34 REMARK 500 SER A 265 147.27 -172.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 295 SG REMARK 620 2 CYS A 300 SG 108.0 REMARK 620 3 HIS A 302 ND1 116.0 102.2 REMARK 620 4 CYS A 308 SG 112.2 106.2 111.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 402 DBREF 6H4D A 1 339 UNP Q9HUL3 RSGA_PSEAE 1 339 SEQRES 1 A 339 MET ALA LYS ARG HIS LEU THR ARG ARG GLN SER TRP ARG SEQRES 2 A 339 ILE GLU LYS ILE GLN GLU GLU ARG ALA ALA ARG ALA ALA SEQRES 3 A 339 ARG ARG GLU SER ARG ALA VAL GLU GLU LEU GLU GLY GLY SEQRES 4 A 339 ASP LEU GLY PRO GLU GLN THR GLY GLN VAL ILE ALA HIS SEQRES 5 A 339 PHE GLY VAL GLN VAL GLU VAL GLU SER ALA ASP GLY GLN SEQRES 6 A 339 VAL SER ARG CYS HIS LEU ARG ALA ASN LEU PRO ALA LEU SEQRES 7 A 339 VAL THR GLY ASP GLN VAL VAL TRP ARG ALA GLY ASN GLN SEQRES 8 A 339 GLY ILE GLY VAL ILE VAL ALA GLN LEU PRO ARG ARG SER SEQRES 9 A 339 GLU LEU CYS ARG PRO ASP MET ARG GLY LEU LEU LYS PRO SEQRES 10 A 339 VAL ALA ALA ASN VAL ASP ARG ILE VAL ILE VAL PHE ALA SEQRES 11 A 339 PRO ARG PRO GLU PRO HIS ALA ASN LEU ILE ASP ARG TYR SEQRES 12 A 339 LEU ILE ALA ALA GLU HIS ALA GLY ILE GLN PRO LEU LEU SEQRES 13 A 339 LEU LEU ASN LYS ALA ASP LEU VAL ASP GLU SER ASN ALA SEQRES 14 A 339 GLU GLY ILE ASP ALA LEU LEU ASN VAL TYR ARG THR LEU SEQRES 15 A 339 GLY TYR PRO LEU ILE GLU VAL SER ALA PHE ASN GLY LEU SEQRES 16 A 339 ALA MET ASP GLU LEU ARG GLY ALA LEU ASP GLY HIS VAL SEQRES 17 A 339 SER VAL PHE VAL GLY GLN SER GLY VAL GLY LYS SER SER SEQRES 18 A 339 LEU VAL ASN ALA LEU LEU PRO GLY VAL ASP THR ARG VAL SEQRES 19 A 339 GLY ASP LEU SER THR VAL THR GLY LYS GLY THR HIS THR SEQRES 20 A 339 THR THR THR ALA ARG LEU PHE HIS PHE PRO GLY GLY GLY SEQRES 21 A 339 ASP LEU ILE ASP SER PRO GLY ILE ARG GLU PHE GLY LEU SEQRES 22 A 339 GLY HIS VAL SER ARG ASP ASP VAL GLU ALA GLY PHE ILE SEQRES 23 A 339 GLU PHE ARG ASP LEU LEU GLY HIS CYS ARG PHE ARG ASP SEQRES 24 A 339 CYS LYS HIS ASP ARG GLU PRO GLY CYS ALA LEU LEU GLN SEQRES 25 A 339 ALA LEU GLU ASP GLY ARG ILE MET PRO GLN ARG MET ALA SEQRES 26 A 339 SER TYR ARG HIS ILE LEU ALA SER MET PRO GLU THR ASP SEQRES 27 A 339 TYR HET ZN A 401 1 HET GDP A 402 28 HETNAM ZN ZINC ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *29(H2 O) HELIX 1 AA1 HIS A 136 ALA A 150 1 15 HELIX 2 AA2 LYS A 160 VAL A 164 5 5 HELIX 3 AA3 ASP A 165 THR A 181 1 17 HELIX 4 AA4 ALA A 196 ASP A 205 1 10 HELIX 5 AA5 GLY A 218 LEU A 227 1 10 HELIX 6 AA6 SER A 265 GLU A 270 1 6 HELIX 7 AA7 SER A 277 GLY A 284 1 8 HELIX 8 AA8 PHE A 285 LEU A 292 1 8 HELIX 9 AA9 CYS A 308 GLY A 317 1 10 HELIX 10 AB1 MET A 320 ALA A 332 1 13 SHEET 1 AA1 6 GLU A 44 PHE A 53 0 SHEET 2 AA1 6 GLN A 56 SER A 61 -1 O GLU A 58 N ILE A 50 SHEET 3 AA1 6 VAL A 66 LEU A 71 -1 O SER A 67 N VAL A 59 SHEET 4 AA1 6 ILE A 93 GLN A 99 1 O GLY A 94 N ARG A 68 SHEET 5 AA1 6 GLN A 83 ARG A 87 -1 N VAL A 85 O ALA A 98 SHEET 6 AA1 6 GLU A 44 PHE A 53 -1 N GLY A 47 O VAL A 84 SHEET 1 AA2 2 GLU A 105 PRO A 109 0 SHEET 2 AA2 2 LEU A 115 ALA A 120 -1 O VAL A 118 N LEU A 106 SHEET 1 AA3 6 LEU A 186 GLU A 188 0 SHEET 2 AA3 6 GLN A 153 LEU A 158 1 N LEU A 158 O ILE A 187 SHEET 3 AA3 6 ARG A 124 PHE A 129 1 N ILE A 127 O LEU A 157 SHEET 4 AA3 6 VAL A 208 VAL A 212 1 O VAL A 210 N VAL A 126 SHEET 5 AA3 6 ASP A 261 ASP A 264 1 O ASP A 261 N SER A 209 SHEET 6 AA3 6 ARG A 252 HIS A 255 -1 N PHE A 254 O LEU A 262 LINK SG CYS A 295 ZN ZN A 401 1555 1555 2.42 LINK SG CYS A 300 ZN ZN A 401 1555 1555 2.41 LINK ND1 HIS A 302 ZN ZN A 401 1555 1555 2.12 LINK SG CYS A 308 ZN ZN A 401 1555 1555 2.47 CISPEP 1 ARG A 132 PRO A 133 0 2.16 SITE 1 AC1 4 CYS A 295 CYS A 300 HIS A 302 CYS A 308 SITE 1 AC2 16 ASN A 159 LYS A 160 ASP A 162 LEU A 163 SITE 2 AC2 16 SER A 190 ALA A 191 PHE A 192 SER A 215 SITE 3 AC2 16 GLY A 216 VAL A 217 GLY A 218 LYS A 219 SITE 4 AC2 16 SER A 220 SER A 221 HIS A 255 PRO A 257 CRYST1 146.405 146.405 146.405 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006830 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006830 0.00000