HEADER SIGNALING PROTEIN 21-JUL-18 6H4G TITLE REGULATORY SUBUNIT OF A CAMP-INDEPENDENT PROTEIN KINASE A FROM TITLE 2 TRYPANOSOMA BRUCEI: E311A, T318R, V319A MUTANT BOUND TO CAMP IN THE A TITLE 3 SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE A REGULATORY SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI TREU927; SOURCE 3 ORGANISM_TAXID: 185431; SOURCE 4 GENE: TB11.02.2210; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PROTEIN KINASE A, REGULATORY SUBUNIT, NUCLEOSIDE-BINDING PROTEIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.VOLPATO SANTOS,E.LORENTZEN,J.BASQUIN,M.BOSHART REVDAT 4 10-APR-24 6H4G 1 SOURCE JRNL REVDAT 3 17-JAN-24 6H4G 1 REMARK REVDAT 2 06-DEC-23 6H4G 1 JRNL REMARK REVDAT 1 14-AUG-19 6H4G 0 JRNL AUTH V.T.OBER,G.B.GITHURE,Y.VOLPATO SANTOS,S.BECKER,G.MOYA MUNOZ, JRNL AUTH 2 J.BASQUIN,F.SCHWEDE,E.LORENTZEN,M.BOSHART JRNL TITL PURINE NUCLEOSIDES REPLACE CAMP IN ALLOSTERIC REGULATION OF JRNL TITL 2 PKA IN TRYPANOSOMATID PATHOGENS. JRNL REF ELIFE V. 12 2024 JRNL REFN ESSN 2050-084X JRNL PMID 38517938 JRNL DOI 10.7554/ELIFE.91040 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.347 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.382 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2085 - 5.1582 1.00 2250 154 0.1805 0.2334 REMARK 3 2 5.1582 - 4.0975 1.00 2159 148 0.1420 0.1828 REMARK 3 3 4.0975 - 3.5805 1.00 2115 143 0.1723 0.2325 REMARK 3 4 3.5805 - 3.2535 1.00 2110 144 0.1987 0.2730 REMARK 3 5 3.2535 - 3.0206 1.00 2102 143 0.2262 0.3211 REMARK 3 6 3.0206 - 2.8426 1.00 2089 143 0.2526 0.3279 REMARK 3 7 2.8426 - 2.7003 1.00 2080 141 0.2496 0.3150 REMARK 3 8 2.7003 - 2.5829 1.00 2084 143 0.2653 0.3910 REMARK 3 9 2.5829 - 2.4835 1.00 2085 141 0.2879 0.3418 REMARK 3 10 2.4835 - 2.3978 1.00 2071 142 0.2916 0.3826 REMARK 3 11 2.3978 - 2.3229 1.00 2086 141 0.3146 0.4071 REMARK 3 12 2.3229 - 2.2565 1.00 2063 141 0.3271 0.3770 REMARK 3 13 2.2565 - 2.1971 1.00 2060 140 0.3311 0.4293 REMARK 3 14 2.1971 - 2.1435 0.96 1984 136 0.3248 0.3730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.381 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.947 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4532 REMARK 3 ANGLE : 0.972 6174 REMARK 3 CHIRALITY : 0.053 695 REMARK 3 PLANARITY : 0.006 780 REMARK 3 DIHEDRAL : 17.097 2644 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.3826 -12.3502 23.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.1245 T22: 0.1040 REMARK 3 T33: 0.1112 T12: 0.0135 REMARK 3 T13: 0.0221 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.3999 L22: 0.2448 REMARK 3 L33: 0.2677 L12: 0.0170 REMARK 3 L13: 0.0072 L23: -0.2317 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.0570 S13: 0.0043 REMARK 3 S21: -0.0380 S22: -0.0308 S23: 0.0132 REMARK 3 S31: 0.0386 S32: 0.0220 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200008902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31343 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.144 REMARK 200 RESOLUTION RANGE LOW (A) : 30.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: 6FLO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.0 0.2 MM MAGNESIUM REMARK 280 CHLORIDE 40% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.33700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.69850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.59850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.69850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.33700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.59850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 199 REMARK 465 ARG A 200 REMARK 465 LYS A 201 REMARK 465 ARG A 202 REMARK 465 ARG A 203 REMARK 465 THR A 204 REMARK 465 THR A 205 REMARK 465 VAL A 206 REMARK 465 ARG A 207 REMARK 465 GLY A 208 REMARK 465 GLU A 209 REMARK 465 GLY A 210 REMARK 465 ILE A 211 REMARK 465 ASP A 212 REMARK 465 PRO A 213 REMARK 465 GLU A 214 REMARK 465 LYS A 215 REMARK 465 LYS A 490 REMARK 465 THR A 491 REMARK 465 THR A 492 REMARK 465 LEU A 493 REMARK 465 ARG A 494 REMARK 465 ALA A 495 REMARK 465 GLU A 496 REMARK 465 GLY A 497 REMARK 465 ARG A 498 REMARK 465 LYS A 499 REMARK 465 GLY B 199 REMARK 465 ARG B 200 REMARK 465 LYS B 201 REMARK 465 ARG B 202 REMARK 465 ARG B 203 REMARK 465 THR B 204 REMARK 465 THR B 205 REMARK 465 VAL B 206 REMARK 465 ARG B 207 REMARK 465 GLY B 208 REMARK 465 GLU B 209 REMARK 465 GLY B 210 REMARK 465 ILE B 211 REMARK 465 ASP B 212 REMARK 465 PRO B 213 REMARK 465 GLU B 214 REMARK 465 LYS B 215 REMARK 465 ALA B 216 REMARK 465 LYS B 217 REMARK 465 SER B 218 REMARK 465 THR B 491 REMARK 465 THR B 492 REMARK 465 LEU B 493 REMARK 465 ARG B 494 REMARK 465 ALA B 495 REMARK 465 GLU B 496 REMARK 465 GLY B 497 REMARK 465 ARG B 498 REMARK 465 LYS B 499 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 GLN A 356 CG CD OE1 NE2 REMARK 470 ASP A 416 CG OD1 OD2 REMARK 470 ARG A 459 CZ REMARK 470 GLU A 463 CG CD OE1 OE2 REMARK 470 GLU A 483 CG CD OE1 OE2 REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 LEU A 489 CG CD1 CD2 REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 279 CG OD1 OD2 REMARK 470 GLN B 296 CG CD OE1 NE2 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 ARG B 336 CZ REMARK 470 ARG B 349 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 470 ASP B 415 CG OD1 OD2 REMARK 470 LYS B 427 CE NZ REMARK 470 GLU B 483 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 296 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 614 O HOH B 726 2.05 REMARK 500 O HOH B 622 O HOH B 743 2.16 REMARK 500 O HOH A 725 O HOH A 730 2.16 REMARK 500 O HOH A 694 O HOH A 745 2.17 REMARK 500 NE2 GLN B 315 O HOH B 601 2.17 REMARK 500 O HOH B 670 O HOH B 689 2.17 REMARK 500 NE ARG B 336 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 475 O HOH A 693 3455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 465 CB CYS B 465 SG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 267 -5.12 77.53 REMARK 500 ASN A 439 70.67 51.02 REMARK 500 SER B 346 44.00 -98.83 REMARK 500 ASN B 439 68.88 65.38 REMARK 500 SER B 477 3.91 -67.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NOS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NOS B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FLO RELATED DB: PDB REMARK 900 6FLO CONTAINS THE WILD TYPE PROTEIN DBREF 6H4G A 199 499 UNP Q385V6 Q385V6_TRYB2 199 499 DBREF 6H4G B 199 499 UNP Q385V6 Q385V6_TRYB2 199 499 SEQADV 6H4G ALA A 311 UNP Q385V6 GLU 311 ENGINEERED MUTATION SEQADV 6H4G ARG A 318 UNP Q385V6 THR 318 ENGINEERED MUTATION SEQADV 6H4G ALA A 319 UNP Q385V6 VAL 319 ENGINEERED MUTATION SEQADV 6H4G ALA B 311 UNP Q385V6 GLU 311 ENGINEERED MUTATION SEQADV 6H4G ARG B 318 UNP Q385V6 THR 318 ENGINEERED MUTATION SEQADV 6H4G ALA B 319 UNP Q385V6 VAL 319 ENGINEERED MUTATION SEQRES 1 A 301 GLY ARG LYS ARG ARG THR THR VAL ARG GLY GLU GLY ILE SEQRES 2 A 301 ASP PRO GLU LYS ALA LYS SER TYR VAL ALA PRO TYR PHE SEQRES 3 A 301 GLU LYS SER GLU ASP GLU THR ALA LEU ILE LEU LYS LEU SEQRES 4 A 301 LEU THR TYR ASN VAL LEU PHE SER PHE LEU ASP SER ARG SEQRES 5 A 301 ASP LEU MET THR VAL ALA GLY ALA MET TRP ARG VAL GLU SEQRES 6 A 301 PHE LYS GLN ASP ASP CYS ILE MET GLU ALA GLY GLN THR SEQRES 7 A 301 THR CYS ASP LYS LEU TYR ILE ILE GLN ASP GLY LYS ALA SEQRES 8 A 301 ASP ILE ILE LYS GLU GLY GLN LYS VAL TYR LEU LYS VAL SEQRES 9 A 301 GLU GLY THR ALA VAL GLY GLU LEU ALA LEU MET TYR GLN SEQRES 10 A 301 THR PRO ARG ALA ALA THR VAL LYS VAL CYS THR PRO GLU SEQRES 11 A 301 LEU ILE ALA TRP ALA LEU ASP ARG ASP THR TYR ARG HIS SEQRES 12 A 301 LEU VAL MET GLY SER ALA ILE ARG ARG ARG GLU THR TYR SEQRES 13 A 301 ILE GLN PHE LEU THR ASN ILE PRO PHE LEU SER GLY LEU SEQRES 14 A 301 ASP ASN TYR GLU LYS LEU GLN LEU ALA ASP ALA LEU SER SEQRES 15 A 301 SER ASP GLU PHE GLU PRO GLY ASP TYR ILE ILE ARG TYR SEQRES 16 A 301 GLY GLU GLU GLY GLU TRP LEU TYR ILE ILE LEU GLU GLY SEQRES 17 A 301 SER VAL ASP VAL VAL GLY ARG ASP ASP ASP GLY ASN GLU SEQRES 18 A 301 LYS HIS VAL TRP GLU PHE GLY LYS GLY ASP HIS VAL GLY SEQRES 19 A 301 GLU LEU GLU PHE LEU ASN ASN HIS ALA ASN VAL ALA ASP SEQRES 20 A 301 VAL VAL ALA LYS THR HIS VAL VAL THR ALA LYS LEU ASN SEQRES 21 A 301 ARG ARG HIS PHE GLU MET CYS LEU GLY PRO VAL ILE ASP SEQRES 22 A 301 VAL LEU LYS ARG THR SER GLN GLN PRO ASN TYR GLU TYR SEQRES 23 A 301 TYR GLN SER LYS LEU LYS THR THR LEU ARG ALA GLU GLY SEQRES 24 A 301 ARG LYS SEQRES 1 B 301 GLY ARG LYS ARG ARG THR THR VAL ARG GLY GLU GLY ILE SEQRES 2 B 301 ASP PRO GLU LYS ALA LYS SER TYR VAL ALA PRO TYR PHE SEQRES 3 B 301 GLU LYS SER GLU ASP GLU THR ALA LEU ILE LEU LYS LEU SEQRES 4 B 301 LEU THR TYR ASN VAL LEU PHE SER PHE LEU ASP SER ARG SEQRES 5 B 301 ASP LEU MET THR VAL ALA GLY ALA MET TRP ARG VAL GLU SEQRES 6 B 301 PHE LYS GLN ASP ASP CYS ILE MET GLU ALA GLY GLN THR SEQRES 7 B 301 THR CYS ASP LYS LEU TYR ILE ILE GLN ASP GLY LYS ALA SEQRES 8 B 301 ASP ILE ILE LYS GLU GLY GLN LYS VAL TYR LEU LYS VAL SEQRES 9 B 301 GLU GLY THR ALA VAL GLY GLU LEU ALA LEU MET TYR GLN SEQRES 10 B 301 THR PRO ARG ALA ALA THR VAL LYS VAL CYS THR PRO GLU SEQRES 11 B 301 LEU ILE ALA TRP ALA LEU ASP ARG ASP THR TYR ARG HIS SEQRES 12 B 301 LEU VAL MET GLY SER ALA ILE ARG ARG ARG GLU THR TYR SEQRES 13 B 301 ILE GLN PHE LEU THR ASN ILE PRO PHE LEU SER GLY LEU SEQRES 14 B 301 ASP ASN TYR GLU LYS LEU GLN LEU ALA ASP ALA LEU SER SEQRES 15 B 301 SER ASP GLU PHE GLU PRO GLY ASP TYR ILE ILE ARG TYR SEQRES 16 B 301 GLY GLU GLU GLY GLU TRP LEU TYR ILE ILE LEU GLU GLY SEQRES 17 B 301 SER VAL ASP VAL VAL GLY ARG ASP ASP ASP GLY ASN GLU SEQRES 18 B 301 LYS HIS VAL TRP GLU PHE GLY LYS GLY ASP HIS VAL GLY SEQRES 19 B 301 GLU LEU GLU PHE LEU ASN ASN HIS ALA ASN VAL ALA ASP SEQRES 20 B 301 VAL VAL ALA LYS THR HIS VAL VAL THR ALA LYS LEU ASN SEQRES 21 B 301 ARG ARG HIS PHE GLU MET CYS LEU GLY PRO VAL ILE ASP SEQRES 22 B 301 VAL LEU LYS ARG THR SER GLN GLN PRO ASN TYR GLU TYR SEQRES 23 B 301 TYR GLN SER LYS LEU LYS THR THR LEU ARG ALA GLU GLY SEQRES 24 B 301 ARG LYS HET CMP A 501 22 HET NOS A 502 19 HET CMP B 501 22 HET NOS B 502 19 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETNAM NOS INOSINE HETSYN CMP CYCLIC AMP; CAMP FORMUL 3 CMP 2(C10 H12 N5 O6 P) FORMUL 4 NOS 2(C10 H12 N4 O5) FORMUL 7 HOH *320(H2 O) HELIX 1 AA1 SER A 227 ASN A 241 1 15 HELIX 2 AA2 VAL A 242 SER A 245 5 4 HELIX 3 AA3 ASP A 248 ALA A 258 1 11 HELIX 4 AA4 GLY A 308 GLN A 315 1 8 HELIX 5 AA5 ARG A 336 VAL A 343 1 8 HELIX 6 AA6 SER A 346 THR A 359 1 14 HELIX 7 AA7 ASN A 360 SER A 365 5 6 HELIX 8 AA8 ASP A 368 ASP A 377 1 10 HELIX 9 AA9 GLU A 433 ASN A 439 1 7 HELIX 10 AB1 HIS A 461 GLY A 467 1 7 HELIX 11 AB2 VAL A 469 SER A 477 1 9 HELIX 12 AB3 GLN A 478 ASN A 481 5 4 HELIX 13 AB4 TYR A 482 SER A 487 1 6 HELIX 14 AB5 SER B 227 ASN B 241 1 15 HELIX 15 AB6 VAL B 242 SER B 245 5 4 HELIX 16 AB7 ASP B 248 MET B 259 1 12 HELIX 17 AB8 GLY B 308 GLN B 315 1 8 HELIX 18 AB9 ARG B 336 VAL B 343 1 8 HELIX 19 AC1 SER B 346 THR B 359 1 14 HELIX 20 AC2 ASN B 360 SER B 365 5 6 HELIX 21 AC3 ASP B 368 ASP B 377 1 10 HELIX 22 AC4 GLY B 432 ASN B 439 1 8 HELIX 23 AC5 HIS B 461 GLY B 467 1 7 HELIX 24 AC6 VAL B 469 SER B 477 1 9 HELIX 25 AC7 GLN B 478 ASN B 481 5 4 HELIX 26 AC8 TYR B 482 LEU B 489 1 8 SHEET 1 AA1 4 MET A 259 LYS A 265 0 SHEET 2 AA1 4 GLU A 328 ASP A 335 -1 O ALA A 333 N TRP A 260 SHEET 3 AA1 4 LYS A 280 ASP A 286 -1 N ILE A 283 O TRP A 332 SHEET 4 AA1 4 ALA A 306 VAL A 307 -1 O VAL A 307 N TYR A 282 SHEET 1 AA2 4 CYS A 269 MET A 271 0 SHEET 2 AA2 4 THR A 321 VAL A 324 -1 O VAL A 322 N MET A 271 SHEET 3 AA2 4 ALA A 289 LYS A 293 -1 N ASP A 290 O LYS A 323 SHEET 4 AA2 4 GLN A 296 LYS A 301 -1 O VAL A 298 N ILE A 291 SHEET 1 AA3 4 LEU A 379 PHE A 384 0 SHEET 2 AA3 4 VAL A 452 ASN A 458 -1 O VAL A 452 N PHE A 384 SHEET 3 AA3 4 TRP A 399 GLU A 405 -1 N ILE A 402 O ALA A 455 SHEET 4 AA3 4 HIS A 430 VAL A 431 -1 O VAL A 431 N TYR A 401 SHEET 1 AA4 4 TYR A 389 ILE A 391 0 SHEET 2 AA4 4 ASP A 445 ALA A 448 -1 O VAL A 446 N ILE A 390 SHEET 3 AA4 4 VAL A 408 ARG A 413 -1 N VAL A 411 O ASP A 445 SHEET 4 AA4 4 GLU A 419 PHE A 425 -1 O VAL A 422 N VAL A 410 SHEET 1 AA5 4 TRP B 260 LYS B 265 0 SHEET 2 AA5 4 GLU B 328 ASP B 335 -1 O ALA B 333 N TRP B 260 SHEET 3 AA5 4 LYS B 280 ASP B 286 -1 N ASP B 286 O ILE B 330 SHEET 4 AA5 4 ALA B 306 VAL B 307 -1 O VAL B 307 N TYR B 282 SHEET 1 AA6 4 CYS B 269 MET B 271 0 SHEET 2 AA6 4 THR B 321 VAL B 324 -1 O VAL B 322 N MET B 271 SHEET 3 AA6 4 ALA B 289 LYS B 293 -1 N ASP B 290 O LYS B 323 SHEET 4 AA6 4 GLN B 296 LYS B 301 -1 O LYS B 301 N ALA B 289 SHEET 1 AA7 4 LEU B 379 PHE B 384 0 SHEET 2 AA7 4 VAL B 452 ASN B 458 -1 O VAL B 452 N PHE B 384 SHEET 3 AA7 4 TRP B 399 GLU B 405 -1 N ILE B 402 O ALA B 455 SHEET 4 AA7 4 HIS B 430 VAL B 431 -1 O VAL B 431 N TYR B 401 SHEET 1 AA8 4 TYR B 389 ILE B 391 0 SHEET 2 AA8 4 ASP B 445 ALA B 448 -1 O VAL B 446 N ILE B 390 SHEET 3 AA8 4 VAL B 408 ARG B 413 -1 N VAL B 411 O ASP B 445 SHEET 4 AA8 4 GLU B 419 PHE B 425 -1 O TRP B 423 N VAL B 410 SITE 1 AC1 15 MET A 271 ILE A 291 TYR A 299 VAL A 307 SITE 2 AC1 15 GLY A 308 GLU A 309 LEU A 310 ALA A 311 SITE 3 AC1 15 ARG A 318 ALA A 319 ALA A 320 TYR A 370 SITE 4 AC1 15 HOH A 611 HOH A 668 HOH A 679 SITE 1 AC2 13 VAL A 410 VAL A 422 VAL A 431 GLY A 432 SITE 2 AC2 13 LEU A 434 GLU A 435 VAL A 443 ALA A 444 SITE 3 AC2 13 ASN A 481 TYR A 482 TYR A 484 TYR A 485 SITE 4 AC2 13 HOH A 627 SITE 1 AC3 14 MET B 271 ILE B 291 TYR B 299 VAL B 307 SITE 2 AC3 14 GLY B 308 GLU B 309 LEU B 310 ALA B 311 SITE 3 AC3 14 ARG B 318 ALA B 319 ALA B 320 TYR B 370 SITE 4 AC3 14 HOH B 619 HOH B 645 SITE 1 AC4 15 VAL B 410 VAL B 422 PHE B 425 VAL B 431 SITE 2 AC4 15 GLY B 432 GLU B 433 LEU B 434 GLU B 435 SITE 3 AC4 15 VAL B 443 ALA B 444 ASN B 481 TYR B 482 SITE 4 AC4 15 TYR B 484 TYR B 485 HOH B 616 CRYST1 64.674 71.197 121.397 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015462 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008237 0.00000