HEADER TRANSFERASE 24-JUL-18 6H59 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PHOSPHATIDYLINOSITOL TITLE 2 PHOSPHATE SYNTHASE (PGSA1) WITH CDP-DAG BOUND CAVEAT 6H59 OLB B 314 HAS WRONG CHIRALITY AT ATOM C22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHATIDYLINOSITOL SYNTHASE,PI SYNTHASE; COMPND 5 EC: 2.7.8.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 GENE: PGSA1, RV2612C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 KEYWDS PHOSPHOTRANSFERASE, GLYCEROPHOSPHOLIPID METABOLISM, METAL BINDING KEYWDS 2 PROTEIN, MEMBRANE PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.GRAVE,M.HOGBOM REVDAT 3 17-JAN-24 6H59 1 LINK REVDAT 2 29-MAY-19 6H59 1 JRNL REVDAT 1 15-MAY-19 6H59 0 JRNL AUTH K.GRAVE,M.D.BENNETT,M.HOGBOM JRNL TITL STRUCTURE OFMYCOBACTERIUM TUBERCULOSISPHOSPHATIDYLINOSITOL JRNL TITL 2 PHOSPHATE SYNTHASE REVEALS MECHANISM OF SUBSTRATE BINDING JRNL TITL 3 AND METAL CATALYSIS. JRNL REF COMMUN BIOL V. 2 175 2019 JRNL REFN ESSN 2399-3642 JRNL PMID 31098408 JRNL DOI 10.1038/S42003-019-0427-1 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 48270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.5694 - 4.6276 0.99 2932 126 0.2414 0.2608 REMARK 3 2 4.6276 - 3.6732 1.00 2792 139 0.1943 0.2233 REMARK 3 3 3.6732 - 3.2089 1.00 2749 154 0.1783 0.2015 REMARK 3 4 3.2089 - 2.9156 1.00 2708 149 0.1628 0.1934 REMARK 3 5 2.9156 - 2.7066 1.00 2714 134 0.1535 0.1843 REMARK 3 6 2.7066 - 2.5470 1.00 2688 158 0.1512 0.2015 REMARK 3 7 2.5470 - 2.4195 1.00 2707 138 0.1551 0.1880 REMARK 3 8 2.4195 - 2.3141 1.00 2694 133 0.1574 0.2061 REMARK 3 9 2.3141 - 2.2250 1.00 2697 139 0.1709 0.2233 REMARK 3 10 2.2250 - 2.1483 0.99 2651 147 0.1760 0.2136 REMARK 3 11 2.1483 - 2.0811 0.99 2662 146 0.1937 0.2271 REMARK 3 12 2.0811 - 2.0216 0.99 2649 150 0.2111 0.2504 REMARK 3 13 2.0216 - 1.9684 0.99 2663 124 0.2241 0.3214 REMARK 3 14 1.9684 - 1.9203 0.99 2680 125 0.2456 0.2674 REMARK 3 15 1.9203 - 1.8767 0.99 2635 149 0.2754 0.3001 REMARK 3 16 1.8767 - 1.8367 0.98 2626 147 0.2946 0.3432 REMARK 3 17 1.8367 - 1.8000 0.99 2623 143 0.3212 0.3535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3340 REMARK 3 ANGLE : 1.124 4515 REMARK 3 CHIRALITY : 0.057 517 REMARK 3 PLANARITY : 0.008 535 REMARK 3 DIHEDRAL : 26.662 1192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48544 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 6H53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG 400 (V/V), 0.1 M NACL, 0.1 M REMARK 280 BIS-TRIS PH 6, AND 0.1 M MGSO4, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.99300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.99300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 PHE A 12 REMARK 465 PRO A 212 REMARK 465 GLY A 213 REMARK 465 LYS A 214 REMARK 465 GLY A 215 REMARK 465 ASP A 216 REMARK 465 ARG A 217 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 PHE B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 ARG B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 PHE B 12 REMARK 465 ALA B 13 REMARK 465 ARG B 14 REMARK 465 ILE B 211 REMARK 465 PRO B 212 REMARK 465 GLY B 213 REMARK 465 LYS B 214 REMARK 465 GLY B 215 REMARK 465 ASP B 216 REMARK 465 ARG B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 68 O HOH A 401 1.38 REMARK 500 HG SER B 128 O HOH B 401 1.46 REMARK 500 OD1 ASP A 89 O HOH A 402 1.70 REMARK 500 OG SER B 128 O HOH B 401 1.76 REMARK 500 OD1 ASP B 68 O HOH B 402 1.84 REMARK 500 O HOH B 402 O HOH B 406 2.07 REMARK 500 OD1 ASP B 89 O HOH B 402 2.09 REMARK 500 O HOH B 450 O HOH B 461 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -8.43 -57.91 REMARK 500 PHE A 170 -49.59 73.67 REMARK 500 PHE B 170 -34.61 73.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FQT A 309 REMARK 610 OLB A 310 REMARK 610 OLB A 311 REMARK 610 OLB A 312 REMARK 610 OLB A 313 REMARK 610 OLB A 314 REMARK 610 OLB A 315 REMARK 610 OLB A 316 REMARK 610 OLB A 317 REMARK 610 FQT B 307 REMARK 610 OLB B 308 REMARK 610 OLB B 309 REMARK 610 OLB B 310 REMARK 610 OLB B 311 REMARK 610 OLB B 312 REMARK 610 OLB B 314 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD2 REMARK 620 2 ASP A 89 O 166.0 REMARK 620 3 ASP A 89 O 166.9 0.9 REMARK 620 4 ASP A 89 OD1 75.4 93.5 94.0 REMARK 620 5 ASP A 89 OD1 109.7 72.0 71.6 64.7 REMARK 620 6 ASP A 89 OD2 71.1 101.6 101.8 21.4 50.9 REMARK 620 7 ASP A 93 OD1 96.7 92.3 92.0 165.9 129.3 164.4 REMARK 620 8 ASP A 93 OD2 111.3 82.7 81.8 144.6 80.7 125.3 49.1 REMARK 620 9 HOH A 401 O 26.6 165.7 164.8 90.0 97.2 77.3 87.5 86.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 O REMARK 620 2 ASP A 68 OD1 74.0 REMARK 620 3 ASP A 71 OD1 73.8 88.1 REMARK 620 4 ASP A 89 OD2 171.1 103.1 97.9 REMARK 620 5 ASP A 89 OD2 148.4 78.6 121.1 34.6 REMARK 620 6 FQT A 309 O12 78.3 151.8 79.0 103.5 129.5 REMARK 620 7 FQT A 309 O16 80.4 85.8 154.1 108.0 82.2 94.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 68 O REMARK 620 2 ASP B 68 OD1 84.2 REMARK 620 3 ASP B 71 OD1 87.7 93.8 REMARK 620 4 FQT B 307 O17 126.6 89.3 145.7 REMARK 620 5 FQT B 307 O13 102.6 171.2 81.1 90.9 REMARK 620 6 HOH B 402 O 134.8 50.9 90.4 65.5 121.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 89 OD2 REMARK 620 2 ASP B 93 OD1 113.5 REMARK 620 3 ASP B 93 OD2 125.5 46.5 REMARK 620 4 HOH B 405 O 92.1 60.6 105.6 REMARK 620 5 HOH B 408 O 70.5 156.0 151.5 96.2 REMARK 620 6 HOH B 435 O 82.3 121.4 77.6 174.5 82.2 REMARK 620 7 HOH B 449 O 149.3 95.7 81.4 94.2 78.9 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FQT A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FQT B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB B 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6H53 RELATED DB: PDB DBREF 6H59 A 1 217 UNP P9WPG7 PISA_MYCTU 1 217 DBREF 6H59 B 1 217 UNP P9WPG7 PISA_MYCTU 1 217 SEQRES 1 A 217 MET SER LYS LEU PRO PHE LEU SER ARG ALA ALA PHE ALA SEQRES 2 A 217 ARG ILE THR THR PRO ILE ALA ARG GLY LEU LEU ARG VAL SEQRES 3 A 217 GLY LEU THR PRO ASP VAL VAL THR ILE LEU GLY THR THR SEQRES 4 A 217 ALA SER VAL ALA GLY ALA LEU THR LEU PHE PRO MET GLY SEQRES 5 A 217 LYS LEU PHE ALA GLY ALA CYS VAL VAL TRP PHE PHE VAL SEQRES 6 A 217 LEU PHE ASP MET LEU ASP GLY ALA MET ALA ARG GLU ARG SEQRES 7 A 217 GLY GLY GLY THR ARG PHE GLY ALA VAL LEU ASP ALA THR SEQRES 8 A 217 CYS ASP ARG ILE SER ASP GLY ALA VAL PHE CYS GLY LEU SEQRES 9 A 217 LEU TRP TRP ILE ALA PHE HIS MET ARG ASP ARG PRO LEU SEQRES 10 A 217 VAL ILE ALA THR LEU ILE CYS LEU VAL THR SER GLN VAL SEQRES 11 A 217 ILE SER TYR ILE LYS ALA ARG ALA GLU ALA SER GLY LEU SEQRES 12 A 217 ARG GLY ASP GLY GLY PHE ILE GLU ARG PRO GLU ARG LEU SEQRES 13 A 217 ILE ILE VAL LEU THR GLY ALA GLY VAL SER ASP PHE PRO SEQRES 14 A 217 PHE VAL PRO TRP PRO PRO ALA LEU SER VAL GLY MET TRP SEQRES 15 A 217 LEU LEU ALA VAL ALA SER VAL ILE THR CYS VAL GLN ARG SEQRES 16 A 217 LEU HIS THR VAL TRP THR SER PRO GLY ALA ILE ASP ARG SEQRES 17 A 217 MET ALA ILE PRO GLY LYS GLY ASP ARG SEQRES 1 B 217 MET SER LYS LEU PRO PHE LEU SER ARG ALA ALA PHE ALA SEQRES 2 B 217 ARG ILE THR THR PRO ILE ALA ARG GLY LEU LEU ARG VAL SEQRES 3 B 217 GLY LEU THR PRO ASP VAL VAL THR ILE LEU GLY THR THR SEQRES 4 B 217 ALA SER VAL ALA GLY ALA LEU THR LEU PHE PRO MET GLY SEQRES 5 B 217 LYS LEU PHE ALA GLY ALA CYS VAL VAL TRP PHE PHE VAL SEQRES 6 B 217 LEU PHE ASP MET LEU ASP GLY ALA MET ALA ARG GLU ARG SEQRES 7 B 217 GLY GLY GLY THR ARG PHE GLY ALA VAL LEU ASP ALA THR SEQRES 8 B 217 CYS ASP ARG ILE SER ASP GLY ALA VAL PHE CYS GLY LEU SEQRES 9 B 217 LEU TRP TRP ILE ALA PHE HIS MET ARG ASP ARG PRO LEU SEQRES 10 B 217 VAL ILE ALA THR LEU ILE CYS LEU VAL THR SER GLN VAL SEQRES 11 B 217 ILE SER TYR ILE LYS ALA ARG ALA GLU ALA SER GLY LEU SEQRES 12 B 217 ARG GLY ASP GLY GLY PHE ILE GLU ARG PRO GLU ARG LEU SEQRES 13 B 217 ILE ILE VAL LEU THR GLY ALA GLY VAL SER ASP PHE PRO SEQRES 14 B 217 PHE VAL PRO TRP PRO PRO ALA LEU SER VAL GLY MET TRP SEQRES 15 B 217 LEU LEU ALA VAL ALA SER VAL ILE THR CYS VAL GLN ARG SEQRES 16 B 217 LEU HIS THR VAL TRP THR SER PRO GLY ALA ILE ASP ARG SEQRES 17 B 217 MET ALA ILE PRO GLY LYS GLY ASP ARG HET MG A 301 1 HET MG A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET PGE A 308 24 HET FQT A 309 65 HET OLB A 310 38 HET OLB A 311 19 HET OLB A 312 19 HET OLB A 313 19 HET OLB A 314 19 HET OLB A 315 19 HET OLB A 316 19 HET OLB A 317 19 HET SO4 A 318 5 HET SO4 B 301 5 HET MG B 302 1 HET MG B 303 1 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET FQT B 307 66 HET OLB B 308 48 HET OLB B 309 23 HET OLB B 310 19 HET OLB B 311 18 HET OLB B 312 18 HET 1PE B 313 38 HET OLB B 314 38 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM FQT [(2~{S})-3-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AZANYL-2- HETNAM 2 FQT OXIDANYLIDENE-1,4-DIHYDROPYRIMIDIN-3-YL)-3,4- HETNAM 3 FQT BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 FQT PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-2-HEXANOYLOXY- HETNAM 5 FQT PROPYL] HEXANOATE HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 MG 4(MG 2+) FORMUL 5 SO4 10(O4 S 2-) FORMUL 10 PGE C6 H14 O4 FORMUL 11 FQT 2(C24 H43 N3 O15 P2) FORMUL 12 OLB 14(C21 H40 O4) FORMUL 33 1PE C10 H22 O6 FORMUL 35 HOH *131(H2 O) HELIX 1 1 ILE A 15 VAL A 26 1 12 HELIX 2 2 PRO A 30 PHE A 49 1 20 HELIX 3 3 PHE A 55 ARG A 78 1 24 HELIX 4 4 THR A 82 HIS A 111 1 30 HELIX 5 5 ARG A 115 SER A 141 1 27 HELIX 6 6 GLU A 151 ASP A 167 1 17 HELIX 7 7 PRO A 174 THR A 201 5 28 HELIX 8 8 THR B 16 VAL B 26 1 11 HELIX 9 9 PRO B 30 PHE B 49 1 20 HELIX 10 10 LEU B 54 ARG B 78 1 25 HELIX 11 11 ARG B 83 HIS B 111 1 29 HELIX 12 12 ARG B 115 SER B 141 1 27 HELIX 13 13 GLU B 151 ASP B 167 1 17 HELIX 14 14 PRO B 175 THR B 201 1 27 SHEET 1 AA1 2 ARG A 208 MET A 209 0 SHEET 2 AA1 2 GLY B 81 THR B 82 -1 O GLY B 81 N MET A 209 LINK OD2 ASP A 68 MG MG A 301 1555 1555 2.84 LINK O ASP A 68 MG MG A 302 1555 1555 2.35 LINK OD1 ASP A 68 MG MG A 302 1555 1555 2.09 LINK OD1 ASP A 71 MG MG A 302 1555 1555 2.12 LINK O AASP A 89 MG MG A 301 1555 1555 2.33 LINK O BASP A 89 MG MG A 301 1555 1555 2.31 LINK OD1AASP A 89 MG MG A 301 1555 1555 2.08 LINK OD1BASP A 89 MG MG A 301 1555 1555 2.50 LINK OD2BASP A 89 MG MG A 301 1555 1555 2.59 LINK OD2AASP A 89 MG MG A 302 1555 1555 2.14 LINK OD2BASP A 89 MG MG A 302 1555 1555 2.49 LINK OD1 ASP A 93 MG MG A 301 1555 1555 1.89 LINK OD2 ASP A 93 MG MG A 301 1555 1555 2.85 LINK MG MG A 301 O HOH A 401 1555 1555 2.00 LINK MG MG A 301 O HOH A 402 1555 1555 2.14 LINK MG MG A 301 O HOH A 407 1555 1555 2.04 LINK MG MG A 302 O12 FQT A 309 1555 1555 2.15 LINK MG MG A 302 O16 FQT A 309 1555 1555 1.88 LINK O ASP B 68 MG MG B 302 1555 1555 1.85 LINK OD1 ASP B 68 MG MG B 302 1555 1555 2.10 LINK OD1 ASP B 71 MG MG B 302 1555 1555 2.05 LINK OD2 ASP B 89 MG MG B 303 1555 1555 1.99 LINK OD1 ASP B 93 MG MG B 303 1555 1555 2.93 LINK OD2 ASP B 93 MG MG B 303 1555 1555 2.23 LINK MG MG B 302 O17 FQT B 307 1555 1555 2.09 LINK MG MG B 302 O13 FQT B 307 1555 1555 1.98 LINK MG MG B 302 O HOH B 402 1555 1555 2.18 LINK MG MG B 303 O HOH B 405 1555 1555 2.18 LINK MG MG B 303 O HOH B 408 1555 1555 2.18 LINK MG MG B 303 O HOH B 435 1555 1555 2.14 LINK MG MG B 303 O HOH B 449 1555 1555 2.07 SITE 1 AC1 6 ASP A 68 ASP A 89 ASP A 93 HOH A 401 SITE 2 AC1 6 HOH A 402 HOH A 407 SITE 1 AC2 4 ASP A 68 ASP A 71 ASP A 89 FQT A 309 SITE 1 AC3 7 ARG A 137 HOH A 426 HOH A 433 ALA B 90 SITE 2 AC3 7 LYS B 135 HOH B 424 HOH B 435 SITE 1 AC4 7 ARG A 94 SER A 132 GLU A 151 ARG A 152 SITE 2 AC4 7 ARG A 155 ARG A 195 HOH A 411 SITE 1 AC5 2 ARG A 21 ARG A 25 SITE 1 AC6 3 ARG A 113 ARG A 115 ARG B 113 SITE 1 AC7 2 ARG A 208 ARG B 78 SITE 1 AC8 5 GLY A 52 TRP A 107 SER A 166 PRO A 174 SITE 2 AC8 5 HOH A 442 SITE 1 AC9 26 PRO A 30 ASP A 31 THR A 34 TRP A 62 SITE 2 AC9 26 VAL A 65 ASP A 68 MET A 69 ASP A 71 SITE 3 AC9 26 GLY A 72 ALA A 75 ARG A 76 GLY A 81 SITE 4 AC9 26 THR A 82 GLY A 85 ALA A 86 ASP A 89 SITE 5 AC9 26 LEU A 156 MG A 302 HOH A 401 HOH A 402 SITE 6 AC9 26 HOH A 408 HOH A 409 HOH A 432 HOH A 438 SITE 7 AC9 26 HOH A 440 HOH A 446 SITE 1 AD1 4 TRP A 106 SO4 A 318 HOH A 453 LEU B 122 SITE 1 AD2 2 VAL A 171 TRP A 173 SITE 1 AD3 4 PRO A 116 ILE A 119 TRP A 182 OLB A 313 SITE 1 AD4 2 VAL A 189 OLB A 312 SITE 1 AD5 3 TRP A 182 HOH A 436 HOH A 451 SITE 1 AD6 3 TRP A 173 OLB A 316 SER B 178 SITE 1 AD7 2 ALA A 176 OLB A 315 SITE 1 AD8 1 THR A 39 SITE 1 AD9 4 TRP A 106 HIS A 111 OLB A 310 ARG B 115 SITE 1 AE1 4 ARG A 115 TRP B 106 HIS B 111 OLB B 314 SITE 1 AE2 4 ASP B 68 ASP B 71 FQT B 307 HOH B 402 SITE 1 AE3 7 ASP B 89 ASP B 93 FQT B 307 HOH B 405 SITE 2 AE3 7 HOH B 408 HOH B 435 HOH B 449 SITE 1 AE4 7 SER B 132 GLU B 151 ARG B 152 ARG B 155 SITE 2 AE4 7 ARG B 195 HOH B 404 HOH B 426 SITE 1 AE5 6 ALA A 90 LYS A 135 HOH A 438 ARG B 137 SITE 2 AE5 6 HOH B 411 HOH B 416 SITE 1 AE6 4 ARG A 113 ARG B 113 ARG B 115 HOH B 441 SITE 1 AE7 23 ILE A 211 PRO B 30 ASP B 31 THR B 34 SITE 2 AE7 23 VAL B 65 ASP B 68 MET B 69 ASP B 71 SITE 3 AE7 23 GLY B 72 GLY B 81 THR B 82 GLY B 85 SITE 4 AE7 23 ASP B 89 MG B 302 MG B 303 HOH B 402 SITE 5 AE7 23 HOH B 405 HOH B 408 HOH B 412 HOH B 423 SITE 6 AE7 23 HOH B 424 HOH B 448 HOH B 449 SITE 1 AE8 4 SER A 178 VAL A 179 TRP B 173 OLB B 309 SITE 1 AE9 3 VAL B 171 TRP B 173 OLB B 308 SITE 1 AF1 1 THR B 47 SITE 1 AF2 1 TRP B 182 SITE 1 AF3 2 TRP B 182 HOH B 452 SITE 1 AF4 9 ARG A 83 GLY B 52 TRP B 107 MET B 112 SITE 2 AF4 9 SER B 141 GLY B 142 SER B 166 PRO B 174 SITE 3 AF4 9 PRO B 203 SITE 1 AF5 3 TRP B 106 SO4 B 301 HOH B 466 CRYST1 97.986 115.080 45.472 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021992 0.00000