HEADER TRANSFERASE 24-JUL-18 6H5A TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PHOSPHATIDYLINOSITOL TITLE 2 PHOSPHATE SYNTHASE (PGSA1) IN COMPLEX WITH MANGANESE AND CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHATIDYLINOSITOL SYNTHASE,PI SYNTHASE; COMPND 5 EC: 2.7.8.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUE FRAGMENT 218-223 IN CHAIN B (-ENLYFQ) IS A COMPND 8 REMNANT AFTER CLONING/PROTEASE CLEAVAGE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: PGSA1, RV2612C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSSETTA2 KEYWDS PHOSPHOTRANSFERASE GLYCEROPHOSPHOLIPID METABOLISM METAL BINDING KEYWDS 2 PROTEIN, MEMBRANE PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.GRAVE,M.HOGBOM REVDAT 3 17-JAN-24 6H5A 1 LINK REVDAT 2 29-MAY-19 6H5A 1 JRNL REVDAT 1 15-MAY-19 6H5A 0 JRNL AUTH K.GRAVE,M.D.BENNETT,M.HOGBOM JRNL TITL STRUCTURE OFMYCOBACTERIUM TUBERCULOSISPHOSPHATIDYLINOSITOL JRNL TITL 2 PHOSPHATE SYNTHASE REVEALS MECHANISM OF SUBSTRATE BINDING JRNL TITL 3 AND METAL CATALYSIS. JRNL REF COMMUN BIOL V. 2 175 2019 JRNL REFN ESSN 2399-3642 JRNL PMID 31098408 JRNL DOI 10.1038/S42003-019-0427-1 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 43956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7130 - 5.8324 1.00 2666 138 0.2124 0.2605 REMARK 3 2 5.8324 - 4.6308 0.97 2600 139 0.2324 0.2365 REMARK 3 3 4.6308 - 4.0458 1.00 2658 143 0.1961 0.1904 REMARK 3 4 4.0458 - 3.6761 1.00 2690 144 0.1960 0.2128 REMARK 3 5 3.6761 - 3.4127 1.00 2674 140 0.1914 0.2403 REMARK 3 6 3.4127 - 3.2116 1.00 2639 142 0.1844 0.1996 REMARK 3 7 3.2116 - 3.0508 1.00 2681 142 0.1714 0.2077 REMARK 3 8 3.0508 - 2.9180 1.00 2676 139 0.1725 0.2078 REMARK 3 9 2.9180 - 2.8057 0.96 2569 135 0.1612 0.1782 REMARK 3 10 2.8057 - 2.7089 0.98 2580 138 0.1687 0.2292 REMARK 3 11 2.7089 - 2.6242 0.99 2673 146 0.1646 0.2109 REMARK 3 12 2.6242 - 2.5492 1.00 2690 143 0.1664 0.2079 REMARK 3 13 2.5492 - 2.4821 1.00 2641 139 0.1674 0.1967 REMARK 3 14 2.4821 - 2.4215 0.99 2666 139 0.1741 0.2254 REMARK 3 15 2.4215 - 2.3665 0.99 2665 136 0.1730 0.1958 REMARK 3 16 2.3665 - 2.3161 1.00 2682 138 0.1775 0.1937 REMARK 3 17 2.3161 - 2.2698 1.00 2660 143 0.1868 0.2452 REMARK 3 18 2.2698 - 2.2269 1.00 2674 145 0.1979 0.2306 REMARK 3 19 2.2269 - 2.1872 1.00 2665 138 0.2015 0.2242 REMARK 3 20 2.1872 - 2.1501 1.00 2657 139 0.2189 0.2506 REMARK 3 21 2.1501 - 2.1154 1.00 2699 143 0.2281 0.2746 REMARK 3 22 2.1154 - 2.0829 0.99 2691 138 0.2416 0.2214 REMARK 3 23 2.0829 - 2.0522 1.00 2637 141 0.2462 0.3100 REMARK 3 24 2.0522 - 2.0233 0.99 2629 139 0.2645 0.3060 REMARK 3 25 2.0233 - 1.9960 0.97 2596 136 0.2798 0.2721 REMARK 3 26 1.9960 - 1.9701 0.98 2640 142 0.2948 0.3163 REMARK 3 27 1.9701 - 1.9454 0.98 2607 138 0.3087 0.3577 REMARK 3 28 1.9454 - 1.9220 0.98 2647 138 0.3116 0.3198 REMARK 3 29 1.9220 - 1.8996 0.99 2611 132 0.3318 0.3599 REMARK 3 30 1.8996 - 1.8783 0.95 2573 131 0.3363 0.3312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3434 REMARK 3 ANGLE : 1.268 4626 REMARK 3 CHIRALITY : 0.051 523 REMARK 3 PLANARITY : 0.007 568 REMARK 3 DIHEDRAL : 24.397 1258 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200011058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-16; 29-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS REMARK 200 BEAMLINE : X06SA; X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00; 1.88 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M; DECTRIS REMARK 200 EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43956 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 45.699 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.14270 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 1.06300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6H53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% PEG 400 (V/V), 0.1 M NACL, 0.12 M REMARK 280 MNCL2 AND 0.1 M TRISODIUM CITRATE DIHYDRATE PH 6, LIPIDIC CUBIC REMARK 280 PHASE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.03350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.41150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.97050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.41150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.03350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.97050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 211 REMARK 465 PRO A 212 REMARK 465 GLY A 213 REMARK 465 LYS A 214 REMARK 465 GLY A 215 REMARK 465 ASP A 216 REMARK 465 ARG A 217 REMARK 465 GLU A 218 REMARK 465 ASN A 219 REMARK 465 LEU A 220 REMARK 465 TYR A 221 REMARK 465 PHE A 222 REMARK 465 GLN A 223 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 PHE B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 ARG B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 PHE B 12 REMARK 465 ALA B 13 REMARK 465 ARG B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 217 O2 SO4 B 306 1.43 REMARK 500 H LEU A 7 O HOH A 401 1.52 REMARK 500 O2 SO4 B 306 O HOH B 401 1.97 REMARK 500 OD1 ASP B 68 O HOH B 402 2.07 REMARK 500 OD1 ASP B 89 O HOH B 403 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 77 HH22 ARG B 144 4454 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 113 59.38 -114.63 REMARK 500 PHE A 170 -48.78 71.87 REMARK 500 ARG B 113 70.36 -117.23 REMARK 500 ASP B 114 73.20 -153.03 REMARK 500 PHE B 170 -52.56 70.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 309 REMARK 610 LFA B 310 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 O REMARK 620 2 ASP A 68 OD1 83.9 REMARK 620 3 ASP A 71 OD1 85.9 169.8 REMARK 620 4 ASP A 89 OD2 174.3 90.4 99.7 REMARK 620 5 HOH A 440 O 89.5 98.3 82.5 92.1 REMARK 620 6 HOH A 445 O 95.5 87.4 92.7 83.5 172.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD1 REMARK 620 2 ASP A 68 OD2 53.9 REMARK 620 3 ASP A 89 OD1 94.3 148.0 REMARK 620 4 ASP A 93 OD1 90.1 83.2 102.1 REMARK 620 5 ASP A 93 OD2 143.5 111.8 95.9 53.5 REMARK 620 6 FLC A 305 OA2 136.2 108.0 92.7 130.2 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MN A 304 MN REMARK 620 2 FLC A 305 OHB 42.7 REMARK 620 3 FLC A 305 OA2 104.8 102.7 REMARK 620 4 FLC A 306 OA2 102.4 101.8 152.0 REMARK 620 5 FLC A 306 OHB 44.5 86.8 105.6 89.2 REMARK 620 6 HOH A 427 O 140.0 172.6 70.2 84.6 97.2 REMARK 620 7 HOH A 464 O 136.1 93.5 84.6 80.5 169.5 83.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC A 305 OG2 REMARK 620 2 FLC A 305 OHB 82.2 REMARK 620 3 FLC A 305 OB1 86.4 100.4 REMARK 620 4 FLC A 306 OB2 87.2 78.4 173.6 REMARK 620 5 FLC A 306 OG1 86.7 161.2 94.0 86.0 REMARK 620 6 FLC A 306 OHB 171.9 90.6 91.1 95.2 101.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 68 O REMARK 620 2 ASP B 68 OD1 79.2 REMARK 620 3 ASP B 71 OD1 74.8 125.1 REMARK 620 4 ASP B 89 OD2 162.2 88.2 102.9 REMARK 620 5 HOH B 402 O 97.5 58.2 78.2 64.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 68 OD2 REMARK 620 2 ASP B 89 OD1 133.4 REMARK 620 3 ASP B 93 OD1 89.3 110.1 REMARK 620 4 ASP B 93 OD2 134.0 90.0 56.0 REMARK 620 5 HOH B 403 O 147.7 58.0 116.6 61.7 REMARK 620 6 HOH B 404 O 71.9 79.0 64.6 110.5 135.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 151 OE1 REMARK 620 2 FLC B 304 OA2 166.3 REMARK 620 3 FLC B 304 OHB 99.4 72.6 REMARK 620 4 FLC B 304 OB1 84.9 82.1 73.0 REMARK 620 5 HOH B 441 O 104.0 87.2 88.7 160.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6H53 RELATED DB: PDB REMARK 900 RELATED ID: 6H59 RELATED DB: PDB DBREF 6H5A A 1 217 UNP P9WPG7 PISA_MYCTU 1 217 DBREF 6H5A B 1 217 UNP P9WPG7 PISA_MYCTU 1 217 SEQADV 6H5A GLU A 218 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A ASN A 219 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A LEU A 220 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A TYR A 221 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A PHE A 222 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A GLN A 223 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A GLU B 218 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A ASN B 219 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A LEU B 220 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A TYR B 221 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A PHE B 222 UNP P9WPG7 EXPRESSION TAG SEQADV 6H5A GLN B 223 UNP P9WPG7 EXPRESSION TAG SEQRES 1 A 223 MET SER LYS LEU PRO PHE LEU SER ARG ALA ALA PHE ALA SEQRES 2 A 223 ARG ILE THR THR PRO ILE ALA ARG GLY LEU LEU ARG VAL SEQRES 3 A 223 GLY LEU THR PRO ASP VAL VAL THR ILE LEU GLY THR THR SEQRES 4 A 223 ALA SER VAL ALA GLY ALA LEU THR LEU PHE PRO MET GLY SEQRES 5 A 223 LYS LEU PHE ALA GLY ALA CYS VAL VAL TRP PHE PHE VAL SEQRES 6 A 223 LEU PHE ASP MET LEU ASP GLY ALA MET ALA ARG GLU ARG SEQRES 7 A 223 GLY GLY GLY THR ARG PHE GLY ALA VAL LEU ASP ALA THR SEQRES 8 A 223 CYS ASP ARG ILE SER ASP GLY ALA VAL PHE CYS GLY LEU SEQRES 9 A 223 LEU TRP TRP ILE ALA PHE HIS MET ARG ASP ARG PRO LEU SEQRES 10 A 223 VAL ILE ALA THR LEU ILE CYS LEU VAL THR SER GLN VAL SEQRES 11 A 223 ILE SER TYR ILE LYS ALA ARG ALA GLU ALA SER GLY LEU SEQRES 12 A 223 ARG GLY ASP GLY GLY PHE ILE GLU ARG PRO GLU ARG LEU SEQRES 13 A 223 ILE ILE VAL LEU THR GLY ALA GLY VAL SER ASP PHE PRO SEQRES 14 A 223 PHE VAL PRO TRP PRO PRO ALA LEU SER VAL GLY MET TRP SEQRES 15 A 223 LEU LEU ALA VAL ALA SER VAL ILE THR CYS VAL GLN ARG SEQRES 16 A 223 LEU HIS THR VAL TRP THR SER PRO GLY ALA ILE ASP ARG SEQRES 17 A 223 MET ALA ILE PRO GLY LYS GLY ASP ARG GLU ASN LEU TYR SEQRES 18 A 223 PHE GLN SEQRES 1 B 223 MET SER LYS LEU PRO PHE LEU SER ARG ALA ALA PHE ALA SEQRES 2 B 223 ARG ILE THR THR PRO ILE ALA ARG GLY LEU LEU ARG VAL SEQRES 3 B 223 GLY LEU THR PRO ASP VAL VAL THR ILE LEU GLY THR THR SEQRES 4 B 223 ALA SER VAL ALA GLY ALA LEU THR LEU PHE PRO MET GLY SEQRES 5 B 223 LYS LEU PHE ALA GLY ALA CYS VAL VAL TRP PHE PHE VAL SEQRES 6 B 223 LEU PHE ASP MET LEU ASP GLY ALA MET ALA ARG GLU ARG SEQRES 7 B 223 GLY GLY GLY THR ARG PHE GLY ALA VAL LEU ASP ALA THR SEQRES 8 B 223 CYS ASP ARG ILE SER ASP GLY ALA VAL PHE CYS GLY LEU SEQRES 9 B 223 LEU TRP TRP ILE ALA PHE HIS MET ARG ASP ARG PRO LEU SEQRES 10 B 223 VAL ILE ALA THR LEU ILE CYS LEU VAL THR SER GLN VAL SEQRES 11 B 223 ILE SER TYR ILE LYS ALA ARG ALA GLU ALA SER GLY LEU SEQRES 12 B 223 ARG GLY ASP GLY GLY PHE ILE GLU ARG PRO GLU ARG LEU SEQRES 13 B 223 ILE ILE VAL LEU THR GLY ALA GLY VAL SER ASP PHE PRO SEQRES 14 B 223 PHE VAL PRO TRP PRO PRO ALA LEU SER VAL GLY MET TRP SEQRES 15 B 223 LEU LEU ALA VAL ALA SER VAL ILE THR CYS VAL GLN ARG SEQRES 16 B 223 LEU HIS THR VAL TRP THR SER PRO GLY ALA ILE ASP ARG SEQRES 17 B 223 MET ALA ILE PRO GLY LYS GLY ASP ARG GLU ASN LEU TYR SEQRES 18 B 223 PHE GLN HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET MN A 304 1 HET FLC A 305 13 HET FLC A 306 13 HET OLC A 307 25 HET OLC A 308 65 HET LFA A 309 33 HET LFA A 310 62 HET MN B 301 1 HET MN B 302 1 HET MN B 303 1 HET FLC B 304 18 HET OLC B 305 25 HET SO4 B 306 5 HET LFA B 307 62 HET 1PE B 308 38 HET 1PE B 309 38 HET LFA B 310 21 HETNAM MN MANGANESE (II) ION HETNAM FLC CITRATE ANION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM LFA EICOSANE HETNAM SO4 SULFATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN LFA LIPID FRAGMENT HETSYN 1PE PEG400 FORMUL 3 MN 7(MN 2+) FORMUL 7 FLC 3(C6 H5 O7 3-) FORMUL 9 OLC 3(C21 H40 O4) FORMUL 11 LFA 4(C20 H42) FORMUL 18 SO4 O4 S 2- FORMUL 20 1PE 2(C10 H22 O6) FORMUL 23 HOH *126(H2 O) LINK O ASP A 68 MN MN A 301 1555 1555 2.09 LINK OD1 ASP A 68 MN MN A 301 1555 1555 2.13 LINK OD1 ASP A 68 MN MN A 302 1555 1555 2.61 LINK OD2 ASP A 68 MN MN A 302 1555 1555 2.22 LINK OD1 ASP A 71 MN MN A 301 1555 1555 2.10 LINK OD2 ASP A 89 MN MN A 301 1555 1555 2.10 LINK OD1 ASP A 89 MN MN A 302 1555 1555 2.24 LINK OD1 ASP A 93 MN MN A 302 1555 1555 2.54 LINK OD2 ASP A 93 MN MN A 302 1555 1555 2.18 LINK MN MN A 301 O HOH A 440 1555 1555 2.10 LINK MN MN A 301 O HOH A 445 1555 1555 2.13 LINK MN MN A 302 OA2 FLC A 305 1555 1555 2.16 LINK MN MN A 303 MN MN A 304 1555 1555 2.81 LINK MN MN A 303 OHB FLC A 305 1555 1555 2.10 LINK MN MN A 303 OA2 FLC A 305 1555 1555 2.52 LINK MN MN A 303 OA2 FLC A 306 1555 1555 2.41 LINK MN MN A 303 OHB FLC A 306 1555 1555 1.91 LINK MN MN A 303 O HOH A 427 1555 1555 2.31 LINK MN MN A 303 O HOH A 464 1555 1555 2.32 LINK MN MN A 304 OG2 FLC A 305 1555 1555 2.16 LINK MN MN A 304 OHB FLC A 305 1555 1555 1.91 LINK MN MN A 304 OB1 FLC A 305 1555 1555 2.14 LINK MN MN A 304 OB2 FLC A 306 1555 1555 2.23 LINK MN MN A 304 OG1 FLC A 306 1555 1555 2.07 LINK MN MN A 304 OHB FLC A 306 1555 1555 1.97 LINK O ASP B 68 MN MN B 302 1555 1555 2.24 LINK OD1 ASP B 68 MN MN B 302 1555 1555 2.05 LINK OD2 ASP B 68 MN MN B 303 1555 1555 2.05 LINK OD1 ASP B 71 MN MN B 302 1555 1555 2.10 LINK OD2 ASP B 89 MN MN B 302 1555 1555 2.15 LINK OD1 ASP B 89 MN MN B 303 1555 1555 2.29 LINK OD1 ASP B 93 MN MN B 303 1555 1555 2.29 LINK OD2 ASP B 93 MN MN B 303 1555 1555 2.34 LINK OE1 GLU B 151 MN MN B 301 1555 1555 2.18 LINK MN MN B 301 OA2 FLC B 304 1555 1555 2.11 LINK MN MN B 301 OHB FLC B 304 1555 1555 2.41 LINK MN MN B 301 OB1 FLC B 304 1555 1555 2.22 LINK MN MN B 301 O HOH B 441 1555 1555 2.20 LINK MN MN B 302 O HOH B 402 1555 1555 2.19 LINK MN MN B 303 O HOH B 403 1555 1555 2.01 LINK MN MN B 303 O HOH B 404 1555 1555 2.19 SITE 1 AC1 5 ASP A 68 ASP A 71 ASP A 89 HOH A 440 SITE 2 AC1 5 HOH A 445 SITE 1 AC2 4 ASP A 68 ASP A 89 ASP A 93 FLC A 305 SITE 1 AC3 5 MN A 304 FLC A 305 FLC A 306 HOH A 427 SITE 2 AC3 5 HOH A 464 SITE 1 AC4 3 MN A 303 FLC A 305 FLC A 306 SITE 1 AC5 17 ARG A 9 ASP A 68 ASP A 89 ASP A 93 SITE 2 AC5 17 ARG A 152 PRO A 153 MN A 302 MN A 303 SITE 3 AC5 17 MN A 304 FLC A 306 HOH A 403 HOH A 407 SITE 4 AC5 17 HOH A 427 HOH A 438 HOH A 440 HOH A 464 SITE 5 AC5 17 PHE B 222 SITE 1 AC6 14 ALA A 90 SER A 132 LYS A 135 ARG A 195 SITE 2 AC6 14 MN A 303 MN A 304 FLC A 305 HOH A 405 SITE 3 AC6 14 HOH A 406 HOH A 420 HOH A 438 HOH A 441 SITE 4 AC6 14 HOH A 464 ARG B 137 SITE 1 AC7 3 TRP A 106 ILE B 119 ILE B 123 SITE 1 AC8 8 SER A 8 ARG A 9 TRP A 62 GLU A 154 SITE 2 AC8 8 ILE A 157 HOH A 401 HOH A 449 HOH A 457 SITE 1 AC9 4 ALA A 40 THR A 47 MET A 51 LYS A 53 SITE 1 AD1 3 GLU B 151 FLC B 304 HOH B 441 SITE 1 AD2 5 ASP B 68 ASP B 71 ASP B 89 MN B 303 SITE 2 AD2 5 HOH B 402 SITE 1 AD3 6 ASP B 68 ASP B 89 ASP B 93 MN B 302 SITE 2 AD3 6 HOH B 403 HOH B 404 SITE 1 AD4 10 SER B 132 LYS B 135 GLU B 151 ARG B 152 SITE 2 AD4 10 ARG B 155 ARG B 195 MN B 301 HOH B 419 SITE 3 AD4 10 HOH B 422 HOH B 441 SITE 1 AD5 10 ILE B 19 GLY B 22 ARG B 25 VAL B 26 SITE 2 AD5 10 ASP B 114 PRO B 116 LEU B 117 SER B 178 SITE 3 AD5 10 TRP B 182 VAL B 186 SITE 1 AD6 7 ARG A 14 SER B 202 PRO B 203 GLY B 204 SITE 2 AD6 7 ARG B 217 ASN B 219 HOH B 401 SITE 1 AD7 2 ILE B 95 TRP B 106 SITE 1 AD8 9 GLY B 52 LEU B 54 TRP B 107 HIS B 111 SITE 2 AD8 9 MET B 112 SER B 166 ASP B 167 PRO B 174 SITE 3 AD8 9 HOH B 414 SITE 1 AD9 7 GLY A 52 TRP A 107 MET A 112 SER A 166 SITE 2 AD9 7 PRO A 174 ALA A 210 GLY B 79 SITE 1 AE1 1 THR B 47 CRYST1 68.067 77.941 100.823 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014691 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009918 0.00000