HEADER HYDROLASE 30-JUL-18 6H6S TITLE SAD PHASING ON NICKEL-SUBSTITUTED HUMAN CARBONIC ANHYDRASE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARBONATE DEHYDRATASE II,CARBONIC ANHYDRASE C,CAC,CARBONIC COMPND 5 ANHYDRASE II,CA-II; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAII, NICKEL, SAD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CALDERONE,M.FRAGAI,J.P.SILVA,C.LUCHINAT,E.RAVERA,C.F.G.C.GERALDES, AUTHOR 2 A.L.MACEDO,L.CEROFOLINI,S.GIUNTINI REVDAT 4 20-NOV-19 6H6S 1 LINK REVDAT 3 21-AUG-19 6H6S 1 REMARK LINK REVDAT 2 06-MAR-19 6H6S 1 JRNL REVDAT 1 09-JAN-19 6H6S 0 JRNL AUTH J.M.SILVA,S.GIUNTINI,L.CEROFOLINI,C.F.G.C.GERALDES, JRNL AUTH 2 A.L.MACEDO,E.RAVERA,M.FRAGAI,C.LUCHINAT,V.CALDERONE JRNL TITL NON-CRYSTALLOGRAPHIC SYMMETRY IN PROTEINS: JAHN-TELLER-LIKE JRNL TITL 2 AND BUTTERFLY-LIKE EFFECTS? JRNL REF J. BIOL. INORG. CHEM. V. 24 91 2019 JRNL REFN ESSN 1432-1327 JRNL PMID 30470900 JRNL DOI 10.1007/S00775-018-1630-0 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 76886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4047 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 232 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 659 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4240 ; 0.017 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3784 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5752 ; 1.901 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8890 ; 1.077 ; 1.645 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 7.334 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;33.499 ;23.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 706 ;12.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4726 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 810 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2062 ; 2.119 ; 1.309 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2061 ; 2.115 ; 1.307 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2574 ; 2.491 ; 1.965 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2575 ; 2.493 ; 1.967 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2178 ; 3.541 ; 1.655 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2179 ; 3.540 ; 1.658 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3179 ; 3.868 ; 2.339 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4907 ; 4.212 ;17.507 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4761 ; 4.050 ;16.717 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8024 ; 3.950 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 429 ;22.124 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8147 ;11.880 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6H6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.48306 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154486 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 2.9 M AMMONIUM SULFATE, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.59000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP B 4 N GLY B 5 1.52 REMARK 500 O HOH A 589 O HOH A 690 1.75 REMARK 500 O HOH A 572 O HOH A 592 1.83 REMARK 500 ND1 HIS B 2 NZ LYS B 168 1.84 REMARK 500 O HOH A 592 O HOH A 690 1.86 REMARK 500 O HOH B 596 O HOH B 632 2.03 REMARK 500 O HOH A 501 O HOH A 611 2.06 REMARK 500 O HOH A 619 O HOH A 629 2.08 REMARK 500 O HOH B 565 O HOH B 632 2.14 REMARK 500 CE LYS A 131 O HOH A 436 2.14 REMARK 500 O HOH B 661 O HOH B 669 2.17 REMARK 500 O HOH A 589 O HOH A 592 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 508 O HOH A 627 2747 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 68 CD GLU A 68 OE1 0.111 REMARK 500 GLU A 234 CD GLU A 234 OE1 0.116 REMARK 500 GLU A 234 CD GLU A 234 OE2 0.068 REMARK 500 HIS B 3 N HIS B 3 CA -0.209 REMARK 500 HIS B 3 CA HIS B 3 CB 0.141 REMARK 500 HIS B 3 CA HIS B 3 C 0.382 REMARK 500 HIS B 3 C HIS B 3 O 0.263 REMARK 500 HIS B 3 C TRP B 4 N 0.160 REMARK 500 TRP B 4 N TRP B 4 CA 0.126 REMARK 500 TRP B 4 C GLY B 5 N -0.419 REMARK 500 GLU B 212 CD GLU B 212 OE1 -0.089 REMARK 500 LYS B 259 C LYS B 259 O 0.188 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 2 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 26 CG - CD - NE ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 HIS B 2 CA - C - N ANGL. DEV. = -19.9 DEGREES REMARK 500 HIS B 3 CB - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 HIS B 3 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 HIS B 3 O - C - N ANGL. DEV. = 15.0 DEGREES REMARK 500 TRP B 4 CA - C - N ANGL. DEV. = 39.5 DEGREES REMARK 500 TRP B 4 O - C - N ANGL. DEV. = -35.2 DEGREES REMARK 500 GLY B 5 C - N - CA ANGL. DEV. = 34.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 26 47.87 -140.90 REMARK 500 ALA A 76 74.92 61.38 REMARK 500 LYS A 110 -1.67 73.59 REMARK 500 PHE A 174 88.89 -151.87 REMARK 500 ASN A 242 49.63 -93.22 REMARK 500 HIS B 3 -28.45 161.82 REMARK 500 TRP B 4 -169.32 -67.12 REMARK 500 ARG B 26 54.70 -146.43 REMARK 500 ALA B 76 76.71 60.65 REMARK 500 LYS B 110 -4.39 74.93 REMARK 500 ASN B 242 50.66 -93.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 57 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B 2 -14.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 2 N REMARK 620 2 HIS A 3 N 85.5 REMARK 620 3 HIS A 3 ND1 169.8 99.4 REMARK 620 4 HOH A 455 O 84.6 166.3 89.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HIS A 95 NE2 97.4 REMARK 620 3 HIS A 118 ND1 107.4 91.7 REMARK 620 4 HOH A 401 O 160.8 100.8 78.2 REMARK 620 5 HOH A 589 O 94.8 167.4 87.5 66.7 REMARK 620 6 HOH A 564 O 93.0 90.0 159.2 81.1 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 2 N REMARK 620 2 HIS B 3 N 90.3 REMARK 620 3 HIS B 3 ND1 155.2 105.9 REMARK 620 4 HOH B 408 O 93.5 144.1 62.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 NE2 REMARK 620 2 HIS B 95 NE2 98.2 REMARK 620 3 HIS B 118 ND1 106.3 90.6 REMARK 620 4 HOH B 560 O 91.5 89.6 162.0 REMARK 620 5 HOH B 402 O 164.3 95.7 80.9 81.2 REMARK 620 6 HOH B 596 O 92.9 168.6 89.0 87.3 73.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 302 DBREF 6H6S A 1 259 UNP P00918 CAH2_HUMAN 2 260 DBREF 6H6S B 1 259 UNP P00918 CAH2_HUMAN 2 260 SEQRES 1 A 259 SER HIS HIS TRP GLY TYR GLY LYS HIS ASN GLY PRO GLU SEQRES 2 A 259 HIS TRP HIS LYS ASP PHE PRO ILE ALA LYS GLY GLU ARG SEQRES 3 A 259 GLN SER PRO VAL ASP ILE ASP THR HIS THR ALA LYS TYR SEQRES 4 A 259 ASP PRO SER LEU LYS PRO LEU SER VAL SER TYR ASP GLN SEQRES 5 A 259 ALA THR SER LEU ARG ILE LEU ASN ASN GLY HIS ALA PHE SEQRES 6 A 259 ASN VAL GLU PHE ASP ASP SER GLN ASP LYS ALA VAL LEU SEQRES 7 A 259 LYS GLY GLY PRO LEU ASP GLY THR TYR ARG LEU ILE GLN SEQRES 8 A 259 PHE HIS PHE HIS TRP GLY SER LEU ASP GLY GLN GLY SER SEQRES 9 A 259 GLU HIS THR VAL ASP LYS LYS LYS TYR ALA ALA GLU LEU SEQRES 10 A 259 HIS LEU VAL HIS TRP ASN THR LYS TYR GLY ASP PHE GLY SEQRES 11 A 259 LYS ALA VAL GLN GLN PRO ASP GLY LEU ALA VAL LEU GLY SEQRES 12 A 259 ILE PHE LEU LYS VAL GLY SER ALA LYS PRO GLY LEU GLN SEQRES 13 A 259 LYS VAL VAL ASP VAL LEU ASP SER ILE LYS THR LYS GLY SEQRES 14 A 259 LYS SER ALA ASP PHE THR ASN PHE ASP PRO ARG GLY LEU SEQRES 15 A 259 LEU PRO GLU SER LEU ASP TYR TRP THR TYR PRO GLY SER SEQRES 16 A 259 LEU THR THR PRO PRO LEU LEU GLU CYS VAL THR TRP ILE SEQRES 17 A 259 VAL LEU LYS GLU PRO ILE SER VAL SER SER GLU GLN VAL SEQRES 18 A 259 LEU LYS PHE ARG LYS LEU ASN PHE ASN GLY GLU GLY GLU SEQRES 19 A 259 PRO GLU GLU LEU MET VAL ASP ASN TRP ARG PRO ALA GLN SEQRES 20 A 259 PRO LEU LYS ASN ARG GLN ILE LYS ALA SER PHE LYS SEQRES 1 B 259 SER HIS HIS TRP GLY TYR GLY LYS HIS ASN GLY PRO GLU SEQRES 2 B 259 HIS TRP HIS LYS ASP PHE PRO ILE ALA LYS GLY GLU ARG SEQRES 3 B 259 GLN SER PRO VAL ASP ILE ASP THR HIS THR ALA LYS TYR SEQRES 4 B 259 ASP PRO SER LEU LYS PRO LEU SER VAL SER TYR ASP GLN SEQRES 5 B 259 ALA THR SER LEU ARG ILE LEU ASN ASN GLY HIS ALA PHE SEQRES 6 B 259 ASN VAL GLU PHE ASP ASP SER GLN ASP LYS ALA VAL LEU SEQRES 7 B 259 LYS GLY GLY PRO LEU ASP GLY THR TYR ARG LEU ILE GLN SEQRES 8 B 259 PHE HIS PHE HIS TRP GLY SER LEU ASP GLY GLN GLY SER SEQRES 9 B 259 GLU HIS THR VAL ASP LYS LYS LYS TYR ALA ALA GLU LEU SEQRES 10 B 259 HIS LEU VAL HIS TRP ASN THR LYS TYR GLY ASP PHE GLY SEQRES 11 B 259 LYS ALA VAL GLN GLN PRO ASP GLY LEU ALA VAL LEU GLY SEQRES 12 B 259 ILE PHE LEU LYS VAL GLY SER ALA LYS PRO GLY LEU GLN SEQRES 13 B 259 LYS VAL VAL ASP VAL LEU ASP SER ILE LYS THR LYS GLY SEQRES 14 B 259 LYS SER ALA ASP PHE THR ASN PHE ASP PRO ARG GLY LEU SEQRES 15 B 259 LEU PRO GLU SER LEU ASP TYR TRP THR TYR PRO GLY SER SEQRES 16 B 259 LEU THR THR PRO PRO LEU LEU GLU CYS VAL THR TRP ILE SEQRES 17 B 259 VAL LEU LYS GLU PRO ILE SER VAL SER SER GLU GLN VAL SEQRES 18 B 259 LEU LYS PHE ARG LYS LEU ASN PHE ASN GLY GLU GLY GLU SEQRES 19 B 259 PRO GLU GLU LEU MET VAL ASP ASN TRP ARG PRO ALA GLN SEQRES 20 B 259 PRO LEU LYS ASN ARG GLN ILE LYS ALA SER PHE LYS HET NI A 301 1 HET NI A 302 1 HET NI B 301 1 HET NI B 302 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 4(NI 2+) FORMUL 7 HOH *659(H2 O) HELIX 1 AA1 HIS A 14 ASP A 18 5 5 HELIX 2 AA2 PHE A 19 GLY A 24 5 6 HELIX 3 AA3 LYS A 125 GLY A 127 5 3 HELIX 4 AA4 ASP A 128 VAL A 133 1 6 HELIX 5 AA5 LYS A 152 GLY A 154 5 3 HELIX 6 AA6 LEU A 155 LEU A 162 1 8 HELIX 7 AA7 ASP A 163 LYS A 166 5 4 HELIX 8 AA8 ASP A 178 LEU A 183 5 6 HELIX 9 AA9 SER A 217 ARG A 225 1 9 HELIX 10 AB1 GLY B 11 TRP B 15 5 5 HELIX 11 AB2 PHE B 19 GLY B 24 5 6 HELIX 12 AB3 LYS B 125 GLY B 127 5 3 HELIX 13 AB4 ASP B 128 VAL B 133 1 6 HELIX 14 AB5 LYS B 152 GLY B 154 5 3 HELIX 15 AB6 LEU B 155 LEU B 162 1 8 HELIX 16 AB7 ASP B 163 LYS B 166 5 4 HELIX 17 AB8 ASP B 178 LEU B 183 5 6 HELIX 18 AB9 SER B 217 ARG B 225 1 9 SHEET 1 AA1 2 ASP A 31 ILE A 32 0 SHEET 2 AA1 2 THR A 107 VAL A 108 1 O THR A 107 N ILE A 32 SHEET 1 AA210 LYS A 38 TYR A 39 0 SHEET 2 AA210 LYS A 255 ALA A 256 1 O ALA A 256 N LYS A 38 SHEET 3 AA210 TYR A 189 GLY A 194 -1 N THR A 191 O LYS A 255 SHEET 4 AA210 VAL A 205 LEU A 210 -1 O VAL A 205 N GLY A 194 SHEET 5 AA210 LEU A 139 VAL A 148 1 N GLY A 143 O LEU A 210 SHEET 6 AA210 ALA A 115 ASN A 123 -1 N LEU A 117 O ILE A 144 SHEET 7 AA210 THR A 86 TRP A 96 -1 N GLN A 91 O VAL A 120 SHEET 8 AA210 PHE A 65 PHE A 69 -1 N PHE A 69 O ILE A 90 SHEET 9 AA210 SER A 55 ASN A 60 -1 N LEU A 56 O GLU A 68 SHEET 10 AA210 SER A 171 ASP A 173 -1 O ALA A 172 N ILE A 58 SHEET 1 AA3 6 LEU A 46 SER A 49 0 SHEET 2 AA3 6 VAL A 77 GLY A 80 -1 O LYS A 79 N SER A 47 SHEET 3 AA3 6 THR A 86 TRP A 96 -1 O TYR A 87 N LEU A 78 SHEET 4 AA3 6 ALA A 115 ASN A 123 -1 O VAL A 120 N GLN A 91 SHEET 5 AA3 6 LEU A 139 VAL A 148 -1 O ILE A 144 N LEU A 117 SHEET 6 AA3 6 ILE A 214 VAL A 216 1 O ILE A 214 N PHE A 145 SHEET 1 AA4 2 ASP B 31 ILE B 32 0 SHEET 2 AA4 2 THR B 107 VAL B 108 1 O THR B 107 N ILE B 32 SHEET 1 AA510 LYS B 38 TYR B 39 0 SHEET 2 AA510 LYS B 255 ALA B 256 1 O ALA B 256 N LYS B 38 SHEET 3 AA510 TYR B 189 GLY B 194 -1 N THR B 191 O LYS B 255 SHEET 4 AA510 VAL B 205 LEU B 210 -1 O VAL B 205 N GLY B 194 SHEET 5 AA510 LEU B 139 VAL B 148 1 N GLY B 143 O LEU B 210 SHEET 6 AA510 ALA B 115 ASN B 123 -1 N LEU B 117 O ILE B 144 SHEET 7 AA510 THR B 86 TRP B 96 -1 N HIS B 93 O HIS B 118 SHEET 8 AA510 PHE B 65 PHE B 69 -1 N VAL B 67 O PHE B 92 SHEET 9 AA510 SER B 55 ASN B 60 -1 N LEU B 56 O GLU B 68 SHEET 10 AA510 SER B 171 ASP B 173 -1 O ALA B 172 N ILE B 58 SHEET 1 AA6 6 LEU B 46 SER B 49 0 SHEET 2 AA6 6 VAL B 77 GLY B 80 -1 O LYS B 79 N SER B 47 SHEET 3 AA6 6 THR B 86 TRP B 96 -1 O TYR B 87 N LEU B 78 SHEET 4 AA6 6 ALA B 115 ASN B 123 -1 O HIS B 118 N HIS B 93 SHEET 5 AA6 6 LEU B 139 VAL B 148 -1 O ILE B 144 N LEU B 117 SHEET 6 AA6 6 ILE B 214 VAL B 216 1 O VAL B 216 N LYS B 147 LINK N HIS A 2 NI NI A 301 1555 1555 1.91 LINK N HIS A 3 NI NI A 301 1555 1555 1.97 LINK ND1 HIS A 3 NI NI A 301 1555 1555 1.91 LINK NE2 HIS A 93 NI NI A 302 1555 1555 1.97 LINK NE2 HIS A 95 NI NI A 302 1555 1555 2.08 LINK ND1 HIS A 118 NI NI A 302 1555 1555 2.05 LINK N HIS B 2 NI NI B 301 1555 1555 2.00 LINK N HIS B 3 NI NI B 301 1555 1555 2.06 LINK ND1 HIS B 3 NI NI B 301 1555 1555 2.48 LINK NE2 HIS B 93 NI NI B 302 1555 1555 2.00 LINK NE2 HIS B 95 NI NI B 302 1555 1555 2.08 LINK ND1 HIS B 118 NI NI B 302 1555 1555 2.07 LINK NI NI A 301 O HOH A 455 1555 1555 2.13 LINK NI NI A 302 O HOH A 401 1555 1555 2.10 LINK NI NI A 302 O HOH A 589 1555 1555 2.26 LINK NI NI A 302 O HOH A 564 1555 1555 2.05 LINK NI NI B 301 O HOH B 408 1555 1555 2.42 LINK NI NI B 302 O HOH B 560 1555 1555 2.04 LINK NI NI B 302 O HOH B 402 1555 1555 2.21 LINK NI NI B 302 O HOH B 596 1555 1555 2.19 CISPEP 1 SER A 28 PRO A 29A 0 -5.65 CISPEP 2 PRO A 199 PRO A 200 0 9.97 CISPEP 3 SER B 28 PRO B 29 0 -7.65 CISPEP 4 PRO B 199 PRO B 200 0 13.59 SITE 1 AC1 4 HIS A 2 HIS A 3 TRP A 4 HOH A 455 SITE 1 AC2 7 HIS A 93 HIS A 95 HIS A 118 THR A 197 SITE 2 AC2 7 HOH A 401 HOH A 564 HOH A 589 SITE 1 AC3 4 HIS B 2 HIS B 3 TRP B 4 HOH B 408 SITE 1 AC4 6 HIS B 93 HIS B 95 HIS B 118 HOH B 402 SITE 2 AC4 6 HOH B 560 HOH B 596 CRYST1 73.480 41.180 84.040 90.00 109.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013609 0.000000 0.004753 0.00000 SCALE2 0.000000 0.024284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012604 0.00000