HEADER OXIDOREDUCTASE 03-AUG-18 6H8P TITLE JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND HISTONE H1.4(18-32)K26ME3 TITLE 2 PEPTIDE (15-MER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A, COMPND 5 JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H1.4; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: HISTONE H1B,HISTONE H1S-4; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS JMJD2A, KDM4A, OXIDOREDUCTASE, NON-HEME, IRON, 2-OXOGLUTARATE, KEYWDS 2 DIOXYGENASE, OXYGENASE, DOUBLE-STRANDED BETA HELIX, DSBH, FACIAL KEYWDS 3 TRIAD, DEMETHYLASE, HISTONE, JMJC DOMAIN, METAL BINDING PROTEIN, KEYWDS 4 EPIGENETIC AND TRANSCRIPTION REGULATION, CHROMATIN REGULATOR, KEYWDS 5 HYDROXYLATION EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,L.J.WALPORT,C.J.SCHOFIELD REVDAT 4 17-JAN-24 6H8P 1 LINK REVDAT 3 24-OCT-18 6H8P 1 JRNL REVDAT 2 12-SEP-18 6H8P 1 JRNL REVDAT 1 15-AUG-18 6H8P 0 JRNL AUTH L.J.WALPORT,R.J.HOPKINSON,R.CHOWDHURY,Y.ZHANG,J.BONNICI, JRNL AUTH 2 R.SCHILLER,A.KAWAMURA,C.J.SCHOFIELD JRNL TITL MECHANISTIC AND STRUCTURAL STUDIES OF KDM-CATALYSED JRNL TITL 2 DEMETHYLATION OF HISTONE 1 ISOTYPE 4 AT LYSINE 26. JRNL REF FEBS LETT. V. 592 3264 2018 JRNL REFN ISSN 1873-3468 JRNL PMID 30156264 JRNL DOI 10.1002/1873-3468.13231 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.S.NG,K.L.KAVANAGH,M.A.MCDONOUGH,D.BUTLER,E.S.PILKA, REMARK 1 AUTH 2 B.M.LIENARD,J.E.BRAY,P.SAVITSKY,O.GILEADI,F.VON DELFT, REMARK 1 AUTH 3 N.R.ROSE,J.OFFER,J.C.SCHEINOST,T.BOROWSKI,M.SUNDSTROM, REMARK 1 AUTH 4 C.J.SCHOFIELD,U.OPPERMANN REMARK 1 TITL CRYSTAL STRUCTURES OF HISTONE DEMETHYLASE JMJD2A REVEAL REMARK 1 TITL 2 BASIS FOR SUBSTRATE SPECIFICITY. REMARK 1 REF NATURE V. 448 87 2007 REMARK 1 REFN ESSN 1476-4687 REMARK 1 PMID 17589501 REMARK 1 DOI 10.1038/NATURE05971 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 60572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4540 - 5.4672 0.98 2961 154 0.1853 0.1930 REMARK 3 2 5.4672 - 4.3404 0.95 2698 151 0.1297 0.1573 REMARK 3 3 4.3404 - 3.7920 1.00 2811 159 0.1463 0.1639 REMARK 3 4 3.7920 - 3.4454 1.00 2816 133 0.1631 0.1664 REMARK 3 5 3.4454 - 3.1985 1.00 2811 137 0.1789 0.1986 REMARK 3 6 3.1985 - 3.0100 1.00 2774 141 0.1886 0.2063 REMARK 3 7 3.0100 - 2.8593 1.00 2805 131 0.2068 0.2432 REMARK 3 8 2.8593 - 2.7348 0.99 2762 132 0.2242 0.2767 REMARK 3 9 2.7348 - 2.6295 0.93 2567 141 0.2250 0.2537 REMARK 3 10 2.6295 - 2.5388 1.00 2786 139 0.2304 0.2505 REMARK 3 11 2.5388 - 2.4594 1.00 2726 158 0.2260 0.2717 REMARK 3 12 2.4594 - 2.3891 0.99 2735 141 0.2327 0.2370 REMARK 3 13 2.3891 - 2.3262 0.99 2756 130 0.2396 0.2773 REMARK 3 14 2.3262 - 2.2695 1.00 2734 174 0.2563 0.2815 REMARK 3 15 2.2695 - 2.2179 1.00 2731 132 0.2529 0.2808 REMARK 3 16 2.2179 - 2.1707 1.00 2767 133 0.2609 0.3012 REMARK 3 17 2.1707 - 2.1273 1.00 2694 141 0.2596 0.2813 REMARK 3 18 2.1273 - 2.0871 0.99 2772 118 0.2731 0.2706 REMARK 3 19 2.0871 - 2.0499 0.99 2721 143 0.2874 0.3213 REMARK 3 20 2.0499 - 2.0151 1.00 2718 147 0.3022 0.3237 REMARK 3 21 2.0151 - 1.9826 0.90 2459 133 0.3113 0.3022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 48.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5950 REMARK 3 ANGLE : 0.886 8079 REMARK 3 CHIRALITY : 0.049 832 REMARK 3 PLANARITY : 0.008 1043 REMARK 3 DIHEDRAL : 15.533 3488 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 125.9070 22.6362 -8.1191 REMARK 3 T TENSOR REMARK 3 T11: 0.5852 T22: 0.3335 REMARK 3 T33: 0.3765 T12: 0.0510 REMARK 3 T13: 0.0818 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.0434 L22: 0.0205 REMARK 3 L33: 0.0477 L12: 0.0116 REMARK 3 L13: 0.0034 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.1203 S13: 0.1987 REMARK 3 S21: -0.2357 S22: -0.1275 S23: -0.3759 REMARK 3 S31: 0.1886 S32: 0.3424 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.9922 18.2584 -5.5702 REMARK 3 T TENSOR REMARK 3 T11: 0.5475 T22: 0.3276 REMARK 3 T33: 0.2932 T12: -0.0984 REMARK 3 T13: -0.1017 T23: 0.0718 REMARK 3 L TENSOR REMARK 3 L11: 0.8076 L22: 0.2881 REMARK 3 L33: 0.2555 L12: -0.2791 REMARK 3 L13: -0.2681 L23: -0.1217 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.0558 S13: 0.3075 REMARK 3 S21: -0.3163 S22: 0.1035 S23: 0.1201 REMARK 3 S31: 0.2764 S32: -0.1436 S33: 0.1481 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.5539 18.1450 1.6877 REMARK 3 T TENSOR REMARK 3 T11: -0.3385 T22: 0.3286 REMARK 3 T33: 0.3690 T12: -0.7374 REMARK 3 T13: -0.7481 T23: -0.0901 REMARK 3 L TENSOR REMARK 3 L11: 0.1201 L22: 0.1088 REMARK 3 L33: 0.3236 L12: 0.0661 REMARK 3 L13: 0.1499 L23: 0.1544 REMARK 3 S TENSOR REMARK 3 S11: -0.1436 S12: 0.0883 S13: -0.0051 REMARK 3 S21: -0.3577 S22: 0.5738 S23: 0.3564 REMARK 3 S31: 0.4310 S32: -0.2988 S33: 0.2237 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.7744 33.6339 -3.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.3645 T22: 0.5208 REMARK 3 T33: 0.5209 T12: -0.0820 REMARK 3 T13: -0.1909 T23: 0.2207 REMARK 3 L TENSOR REMARK 3 L11: 0.1250 L22: 0.0355 REMARK 3 L33: 0.1850 L12: -0.0760 REMARK 3 L13: 0.0009 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: 0.0765 S13: 0.0616 REMARK 3 S21: -0.2101 S22: 0.1622 S23: 0.2824 REMARK 3 S31: 0.0807 S32: -0.5217 S33: 0.1849 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.2572 20.3745 3.4087 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: 0.2243 REMARK 3 T33: 0.2522 T12: -0.0921 REMARK 3 T13: -0.0993 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.8780 L22: 0.5211 REMARK 3 L33: 0.8388 L12: -0.3291 REMARK 3 L13: -0.0399 L23: -0.5577 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.1782 S13: 0.0143 REMARK 3 S21: -0.1804 S22: 0.1296 S23: 0.0651 REMARK 3 S31: 0.3713 S32: -0.1961 S33: 0.0683 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 292 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 127.9566 12.9760 12.5177 REMARK 3 T TENSOR REMARK 3 T11: 0.3438 T22: 0.3307 REMARK 3 T33: 0.4140 T12: 0.0204 REMARK 3 T13: -0.0277 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.1314 L22: 0.1328 REMARK 3 L33: 0.1374 L12: -0.2168 REMARK 3 L13: 0.1641 L23: -0.1631 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.0218 S13: -0.0737 REMARK 3 S21: -0.1248 S22: 0.0035 S23: -0.1017 REMARK 3 S31: 0.1513 S32: -0.0189 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.3805 47.1301 -30.0057 REMARK 3 T TENSOR REMARK 3 T11: 0.5553 T22: 0.4826 REMARK 3 T33: 0.4462 T12: 0.1175 REMARK 3 T13: -0.1836 T23: -0.1202 REMARK 3 L TENSOR REMARK 3 L11: 0.0707 L22: 0.0325 REMARK 3 L33: 0.0263 L12: 0.0159 REMARK 3 L13: -0.0292 L23: -0.0144 REMARK 3 S TENSOR REMARK 3 S11: 0.4091 S12: 0.3974 S13: -0.3970 REMARK 3 S21: -0.3775 S22: -0.3004 S23: 0.6771 REMARK 3 S31: 0.2196 S32: -0.1591 S33: -0.0020 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 134.6959 55.7447 -28.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.7906 REMARK 3 T33: 0.3892 T12: 0.1509 REMARK 3 T13: 0.3392 T23: 0.3393 REMARK 3 L TENSOR REMARK 3 L11: 0.4087 L22: 0.3704 REMARK 3 L33: 0.3013 L12: 0.2636 REMARK 3 L13: 0.2169 L23: 0.1809 REMARK 3 S TENSOR REMARK 3 S11: 0.3828 S12: 0.6865 S13: 0.0478 REMARK 3 S21: -0.2422 S22: -0.4399 S23: -0.6034 REMARK 3 S31: 0.1486 S32: 0.4602 S33: 0.1580 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 136.7975 38.9114 -27.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.4887 T22: 0.5745 REMARK 3 T33: 0.3852 T12: 0.2444 REMARK 3 T13: 0.1658 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.1905 L22: 0.1150 REMARK 3 L33: 0.0828 L12: -0.1206 REMARK 3 L13: -0.0604 L23: 0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.2973 S12: 0.3386 S13: -0.0990 REMARK 3 S21: -0.2516 S22: -0.2985 S23: -0.1753 REMARK 3 S31: 0.1820 S32: 0.4294 S33: 0.0702 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 122.9727 53.9721 -21.0606 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.3378 REMARK 3 T33: 0.2502 T12: 0.0602 REMARK 3 T13: 0.0481 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 0.6359 L22: 0.5434 REMARK 3 L33: 0.1104 L12: -0.3144 REMARK 3 L13: 0.3021 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: 0.1688 S12: 0.1860 S13: 0.0620 REMARK 3 S21: -0.1138 S22: -0.3150 S23: -0.0491 REMARK 3 S31: 0.0427 S32: 0.1773 S33: -0.0014 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 118.3007 53.2521 -19.9604 REMARK 3 T TENSOR REMARK 3 T11: 0.2885 T22: 0.3224 REMARK 3 T33: 0.2522 T12: 0.0575 REMARK 3 T13: 0.0090 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.3474 L22: 0.5013 REMARK 3 L33: 0.2270 L12: -0.3016 REMARK 3 L13: 0.3446 L23: -0.3628 REMARK 3 S TENSOR REMARK 3 S11: 0.1203 S12: 0.1519 S13: 0.0807 REMARK 3 S21: -0.1981 S22: -0.1817 S23: 0.1302 REMARK 3 S31: 0.0576 S32: 0.1214 S33: -0.0041 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.3331 59.5956 -14.2908 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.3580 REMARK 3 T33: 0.5224 T12: 0.0412 REMARK 3 T13: 0.0076 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0921 L22: 0.0825 REMARK 3 L33: 0.0507 L12: -0.0747 REMARK 3 L13: -0.0434 L23: -0.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0558 S13: -0.0584 REMARK 3 S21: 0.1555 S22: -0.0117 S23: 0.2044 REMARK 3 S31: 0.0339 S32: -0.2673 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 24 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.2011 10.9838 8.3312 REMARK 3 T TENSOR REMARK 3 T11: 0.6314 T22: 0.6410 REMARK 3 T33: 0.5269 T12: -0.0788 REMARK 3 T13: -0.0114 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0027 REMARK 3 L33: 0.0016 L12: 0.0022 REMARK 3 L13: 0.0030 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.0127 S13: 0.0580 REMARK 3 S21: -0.0433 S22: -0.0225 S23: 0.0089 REMARK 3 S31: -0.0232 S32: 0.0299 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 24 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 126.1418 62.6828 -18.6713 REMARK 3 T TENSOR REMARK 3 T11: 0.6328 T22: 0.8790 REMARK 3 T33: 1.2150 T12: 0.0085 REMARK 3 T13: 0.0382 T23: -0.1902 REMARK 3 L TENSOR REMARK 3 L11: 0.0021 L22: 0.0122 REMARK 3 L33: 0.0011 L12: 0.0002 REMARK 3 L13: -0.0016 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: -0.0230 S13: 0.0318 REMARK 3 S21: -0.0140 S22: -0.0427 S23: -0.0137 REMARK 3 S31: 0.0329 S32: 0.0319 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91741 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 47.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.93700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OX0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB BUFFER (MALONIC REMARK 280 ACID/IMIDAZOLE/BORIC ACID, PH 6.0) 25% W/V POLYETHYLENE GLYCOL REMARK 280 1500, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.36100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.07300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.36100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.07300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 355 REMARK 465 GLU A 356 REMARK 465 SER A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 356 REMARK 465 SER B 357 REMARK 465 GLU B 358 REMARK 465 LEU B 359 REMARK 465 THR C 18 REMARK 465 PRO C 19 REMARK 465 VAL C 20 REMARK 465 LYS C 21 REMARK 465 LYS C 22 REMARK 465 LYS C 23 REMARK 465 ALA C 30 REMARK 465 ALA C 31 REMARK 465 LYS C 32 REMARK 465 THR D 18 REMARK 465 PRO D 19 REMARK 465 VAL D 20 REMARK 465 LYS D 21 REMARK 465 LYS D 22 REMARK 465 LYS D 23 REMARK 465 GLY D 29 REMARK 465 ALA D 30 REMARK 465 ALA D 31 REMARK 465 LYS D 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 110 CD NE CZ NH1 NH2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 LYS A 224 CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 LYS A 251 CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 ASP A 311 CG OD1 OD2 REMARK 470 LYS A 333 CE NZ REMARK 470 LYS A 336 CE NZ REMARK 470 SER B 3 OG REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 GLU B 52 OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ILE B 62 CG1 CG2 CD1 REMARK 470 LEU B 74 CD1 CD2 REMARK 470 LYS B 89 CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 ARG B 95 NE CZ NH1 NH2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 ARG B 110 CD NE CZ NH1 NH2 REMARK 470 GLU B 113 OE1 OE2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 LYS B 120 CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 ARG B 154 NE CZ NH1 NH2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 LYS B 224 CD CE NZ REMARK 470 GLN B 232 CG CD OE1 NE2 REMARK 470 LYS B 310 CD CE NZ REMARK 470 LYS B 330 CD CE NZ REMARK 470 LYS B 336 CE NZ REMARK 470 LYS B 355 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 98 HD22 ASN B 102 1.39 REMARK 500 OE1 GLU A 142 HE2 HIS A 144 1.45 REMARK 500 HH21 ARG A 98 O1 GOL A 505 1.50 REMARK 500 HH22 ARG B 98 O3 GOL B 505 1.52 REMARK 500 HG SER A 103 O HOH A 601 1.53 REMARK 500 OG SER A 103 O HOH A 601 1.99 REMARK 500 O GLY B 203 O HOH B 601 2.00 REMARK 500 NH2 ARG A 29 OE2 GLU A 352 2.06 REMARK 500 O ARG B 98 ND2 ASN B 102 2.18 REMARK 500 OG SER A 58 OD2 ASP A 60 2.19 REMARK 500 OG1 THR A 139 O HOH A 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 192 18.57 58.39 REMARK 500 ASP A 311 31.72 -86.37 REMARK 500 SER B 112 -97.53 -97.28 REMARK 500 MET B 192 18.60 56.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 25 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 830 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE2 106.2 REMARK 620 3 HIS A 276 NE2 89.3 88.7 REMARK 620 4 OGA A 504 O2' 86.3 164.7 100.5 REMARK 620 5 OGA A 504 O2 172.6 80.7 88.3 87.2 REMARK 620 6 HOH A 713 O 81.6 95.1 170.8 77.7 100.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 111.5 REMARK 620 3 CYS A 306 SG 117.1 110.2 REMARK 620 4 CYS A 308 SG 113.7 90.3 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE2 102.9 REMARK 620 3 HIS B 276 NE2 93.1 83.7 REMARK 620 4 OGA B 504 O2 172.1 81.9 93.7 REMARK 620 5 OGA B 504 O2' 83.4 168.5 105.7 90.8 REMARK 620 6 HOH B 677 O 81.8 91.7 172.2 91.8 79.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 108.1 REMARK 620 3 CYS B 306 SG 116.3 112.1 REMARK 620 4 CYS B 308 SG 116.5 92.3 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 DBREF 6H8P A 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 6H8P B 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 6H8P C 18 32 UNP P10412 H14_HUMAN 18 32 DBREF 6H8P D 18 32 UNP P10412 H14_HUMAN 18 32 SEQADV 6H8P MET A -21 UNP O75164 INITIATING METHIONINE SEQADV 6H8P HIS A -20 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS A -19 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS A -18 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS A -17 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS A -16 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS A -15 UNP O75164 EXPRESSION TAG SEQADV 6H8P SER A -14 UNP O75164 EXPRESSION TAG SEQADV 6H8P SER A -13 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLY A -12 UNP O75164 EXPRESSION TAG SEQADV 6H8P VAL A -11 UNP O75164 EXPRESSION TAG SEQADV 6H8P ASP A -10 UNP O75164 EXPRESSION TAG SEQADV 6H8P LEU A -9 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLY A -8 UNP O75164 EXPRESSION TAG SEQADV 6H8P THR A -7 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLU A -6 UNP O75164 EXPRESSION TAG SEQADV 6H8P ASN A -5 UNP O75164 EXPRESSION TAG SEQADV 6H8P LEU A -4 UNP O75164 EXPRESSION TAG SEQADV 6H8P TYR A -3 UNP O75164 EXPRESSION TAG SEQADV 6H8P PHE A -2 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLN A -1 UNP O75164 EXPRESSION TAG SEQADV 6H8P SER A 0 UNP O75164 EXPRESSION TAG SEQADV 6H8P MET B -21 UNP O75164 INITIATING METHIONINE SEQADV 6H8P HIS B -20 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS B -19 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS B -18 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS B -17 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS B -16 UNP O75164 EXPRESSION TAG SEQADV 6H8P HIS B -15 UNP O75164 EXPRESSION TAG SEQADV 6H8P SER B -14 UNP O75164 EXPRESSION TAG SEQADV 6H8P SER B -13 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLY B -12 UNP O75164 EXPRESSION TAG SEQADV 6H8P VAL B -11 UNP O75164 EXPRESSION TAG SEQADV 6H8P ASP B -10 UNP O75164 EXPRESSION TAG SEQADV 6H8P LEU B -9 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLY B -8 UNP O75164 EXPRESSION TAG SEQADV 6H8P THR B -7 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLU B -6 UNP O75164 EXPRESSION TAG SEQADV 6H8P ASN B -5 UNP O75164 EXPRESSION TAG SEQADV 6H8P LEU B -4 UNP O75164 EXPRESSION TAG SEQADV 6H8P TYR B -3 UNP O75164 EXPRESSION TAG SEQADV 6H8P PHE B -2 UNP O75164 EXPRESSION TAG SEQADV 6H8P GLN B -1 UNP O75164 EXPRESSION TAG SEQADV 6H8P SER B 0 UNP O75164 EXPRESSION TAG SEQRES 1 A 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 A 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 A 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 A 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 A 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 A 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 A 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 A 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 A 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 A 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 A 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 A 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 A 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 A 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 A 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 A 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 A 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 A 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 A 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 A 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 A 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 A 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 A 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 A 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 A 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 A 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 A 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 A 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 A 381 GLU SER GLU LEU SEQRES 1 B 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 B 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 B 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 B 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 B 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 B 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 B 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 B 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 B 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 B 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 B 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 B 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 B 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 B 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 B 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 B 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 B 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 B 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 B 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 B 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 B 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 B 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 B 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 B 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 B 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 B 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 B 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 B 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 B 381 GLU SER GLU LEU SEQRES 1 C 15 THR PRO VAL LYS LYS LYS ALA ARG M3L SER ALA GLY ALA SEQRES 2 C 15 ALA LYS SEQRES 1 D 15 THR PRO VAL LYS LYS LYS ALA ARG M3L SER ALA GLY ALA SEQRES 2 D 15 ALA LYS MODRES 6H8P M3L C 26 LYS MODIFIED RESIDUE MODRES 6H8P M3L D 26 LYS MODIFIED RESIDUE HET M3L C 26 31 HET M3L D 26 31 HET NI A 501 1 HET ZN A 502 1 HET CL A 503 1 HET OGA A 504 13 HET GOL A 505 14 HET GOL A 506 14 HET GOL A 507 14 HET NI B 501 1 HET ZN B 502 1 HET CL B 503 1 HET OGA B 504 13 HET GOL B 505 14 HETNAM M3L N-TRIMETHYLLYSINE HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM OGA N-OXALYLGLYCINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 NI 2(NI 2+) FORMUL 6 ZN 2(ZN 2+) FORMUL 7 CL 2(CL 1-) FORMUL 8 OGA 2(C4 H5 N O5) FORMUL 9 GOL 4(C3 H8 O3) FORMUL 17 HOH *454(H2 O) HELIX 1 AA1 ASN A 9 ARG A 13 5 5 HELIX 2 AA2 THR A 20 ARG A 25 1 6 HELIX 3 AA3 ASN A 26 GLN A 37 1 12 HELIX 4 AA4 GLY A 38 ALA A 42 5 5 HELIX 5 AA5 VAL A 94 SER A 103 1 10 HELIX 6 AA6 GLU A 113 LEU A 125 1 13 HELIX 7 AA7 THR A 155 LEU A 157 5 3 HELIX 8 AA8 ASP A 158 GLU A 163 1 6 HELIX 9 AA9 GLU A 190 LEU A 194 5 5 HELIX 10 AB1 PRO A 212 GLU A 214 5 3 HELIX 11 AB2 HIS A 215 PHE A 227 1 13 HELIX 12 AB3 PHE A 227 CYS A 234 1 8 HELIX 13 AB4 ALA A 236 LYS A 241 5 6 HELIX 14 AB5 SER A 246 TYR A 253 1 8 HELIX 15 AB6 ARG A 295 ALA A 303 1 9 HELIX 16 AB7 MET A 317 GLN A 325 1 9 HELIX 17 AB8 GLN A 325 ALA A 334 1 10 HELIX 18 AB9 THR A 347 LEU A 354 5 8 HELIX 19 AC1 GLU B 4 LEU B 8 1 5 HELIX 20 AC2 THR B 20 ARG B 25 1 6 HELIX 21 AC3 ASN B 26 GLN B 37 1 12 HELIX 22 AC4 GLY B 38 ALA B 42 5 5 HELIX 23 AC5 ASP B 61 ASP B 64 5 4 HELIX 24 AC6 VAL B 94 SER B 103 1 10 HELIX 25 AC7 GLU B 113 LEU B 125 1 13 HELIX 26 AC8 THR B 155 LEU B 157 5 3 HELIX 27 AC9 ASP B 158 GLY B 165 1 8 HELIX 28 AD1 GLU B 190 LEU B 194 5 5 HELIX 29 AD2 PRO B 212 GLU B 214 5 3 HELIX 30 AD3 HIS B 215 PHE B 227 1 13 HELIX 31 AD4 PHE B 227 CYS B 234 1 8 HELIX 32 AD5 ALA B 236 LYS B 241 5 6 HELIX 33 AD6 SER B 246 TYR B 253 1 8 HELIX 34 AD7 ARG B 295 ALA B 303 1 9 HELIX 35 AD8 MET B 317 GLN B 325 1 9 HELIX 36 AD9 GLN B 325 ALA B 334 1 10 HELIX 37 AE1 THR B 347 GLU B 349 5 3 HELIX 38 AE2 ALA B 350 LYS B 355 1 6 SHEET 1 AA110 MET A 15 PHE A 17 0 SHEET 2 AA110 LEU A 44 VAL A 47 1 O LYS A 46 N MET A 15 SHEET 3 AA110 PHE A 267 THR A 270 -1 O ILE A 269 N ALA A 45 SHEET 4 AA110 TYR A 195 GLY A 203 -1 N ASN A 198 O MET A 268 SHEET 5 AA110 ASN A 284 PHE A 291 -1 O GLU A 287 N TYR A 199 SHEET 6 AA110 TYR A 175 GLY A 179 -1 N TYR A 177 O ALA A 286 SHEET 7 AA110 ILE A 131 ASN A 137 -1 N GLY A 133 O PHE A 178 SHEET 8 AA110 ILE A 71 GLN A 78 -1 N ILE A 71 O TYR A 132 SHEET 9 AA110 LEU A 81 GLN A 88 -1 O TYR A 85 N LEU A 74 SHEET 10 AA110 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 AA2 2 VAL A 66 ILE A 67 0 SHEET 2 AA2 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 AA3 4 SER A 184 HIS A 188 0 SHEET 2 AA3 4 TYR A 275 ASN A 280 -1 O GLY A 278 N PHE A 185 SHEET 3 AA3 4 LYS A 206 VAL A 211 -1 N TYR A 209 O ALA A 277 SHEET 4 AA3 4 ASP A 258 GLN A 262 -1 O GLN A 262 N LYS A 206 SHEET 1 AA410 MET B 15 PHE B 17 0 SHEET 2 AA410 LEU B 44 VAL B 47 1 O LYS B 46 N MET B 15 SHEET 3 AA410 PHE B 267 THR B 270 -1 O ILE B 269 N ALA B 45 SHEET 4 AA410 TYR B 195 GLY B 203 -1 N ASN B 198 O MET B 268 SHEET 5 AA410 ASN B 284 PHE B 291 -1 O GLU B 287 N TYR B 199 SHEET 6 AA410 TYR B 175 GLY B 179 -1 N TYR B 177 O ALA B 286 SHEET 7 AA410 ILE B 131 ASN B 137 -1 N GLY B 133 O PHE B 178 SHEET 8 AA410 ILE B 71 GLN B 78 -1 N ILE B 71 O TYR B 132 SHEET 9 AA410 LEU B 81 GLN B 88 -1 O TYR B 85 N LEU B 74 SHEET 10 AA410 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 AA5 2 VAL B 66 ILE B 67 0 SHEET 2 AA5 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 AA6 4 SER B 184 HIS B 188 0 SHEET 2 AA6 4 TYR B 275 ASN B 280 -1 O HIS B 276 N HIS B 188 SHEET 3 AA6 4 LYS B 206 VAL B 211 -1 N SER B 207 O PHE B 279 SHEET 4 AA6 4 ASP B 258 GLN B 262 -1 O GLN B 262 N LYS B 206 LINK C ARG C 25 N M3L C 26 1555 1555 1.31 LINK C M3L C 26 N SER C 27 1555 1555 1.32 LINK C ARG D 25 N M3L D 26 1555 1555 1.32 LINK C M3L D 26 N SER D 27 1555 1555 1.33 LINK NE2 HIS A 188 NI NI A 501 1555 1555 2.09 LINK OE2 GLU A 190 NI NI A 501 1555 1555 2.04 LINK SG CYS A 234 ZN ZN A 502 1555 1555 2.30 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.19 LINK NE2 HIS A 276 NI NI A 501 1555 1555 2.14 LINK SG CYS A 306 ZN ZN A 502 1555 1555 2.19 LINK SG CYS A 308 ZN ZN A 502 1555 1555 2.34 LINK NI NI A 501 O2' OGA A 504 1555 1555 2.15 LINK NI NI A 501 O2 OGA A 504 1555 1555 2.04 LINK NI NI A 501 O HOH A 713 1555 1555 2.41 LINK NE2 HIS B 188 NI NI B 501 1555 1555 2.17 LINK OE2 GLU B 190 NI NI B 501 1555 1555 2.19 LINK SG CYS B 234 ZN ZN B 502 1555 1555 2.17 LINK NE2 HIS B 240 ZN ZN B 502 1555 1555 2.05 LINK NE2 HIS B 276 NI NI B 501 1555 1555 2.06 LINK SG CYS B 306 ZN ZN B 502 1555 1555 2.19 LINK SG CYS B 308 ZN ZN B 502 1555 1555 2.35 LINK NI NI B 501 O2 OGA B 504 1555 1555 1.80 LINK NI NI B 501 O2' OGA B 504 1555 1555 2.12 LINK NI NI B 501 O HOH B 677 1555 1555 2.20 SITE 1 AC1 5 HIS A 188 GLU A 190 HIS A 276 OGA A 504 SITE 2 AC1 5 HOH A 713 SITE 1 AC2 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC3 3 PHE A 227 GLY A 229 SER A 230 SITE 1 AC4 12 TYR A 132 PHE A 185 HIS A 188 GLU A 190 SITE 2 AC4 12 SER A 196 ASN A 198 LYS A 206 HIS A 276 SITE 3 AC4 12 SER A 288 NI A 501 HOH A 713 M3L C 26 SITE 1 AC5 2 TYR A 59 ARG A 98 SITE 1 AC6 2 GLU A 23 ARG A 29 SITE 1 AC7 10 LYS A 217 TYR A 273 TYR A 299 GLN A 302 SITE 2 AC7 10 ILE A 341 HIS A 343 HOH A 610 HOH A 627 SITE 3 AC7 10 HOH A 669 HOH A 733 SITE 1 AC8 5 HIS B 188 GLU B 190 HIS B 276 OGA B 504 SITE 2 AC8 5 HOH B 677 SITE 1 AC9 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 SITE 1 AD1 4 LYS A 105 PHE B 227 GLY B 229 SER B 230 SITE 1 AD2 12 TYR B 132 PHE B 185 HIS B 188 GLU B 190 SITE 2 AD2 12 SER B 196 ASN B 198 LYS B 206 HIS B 276 SITE 3 AD2 12 NI B 501 HOH B 677 HOH B 748 M3L D 26 SITE 1 AD3 1 ARG B 98 CRYST1 100.722 150.146 57.601 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017361 0.00000