HEADER VIRAL PROTEIN 06-AUG-18 6H9Z TITLE MOLECULAR BASES OF HISTO-BLOOD GROUP ANTIGEN RECOGNITION BY THE MOST TITLE 2 COMMON HUMAN ROTAVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: G1 AND S2 ARE RESIDUAL FROM TAG DIGESTION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 28875; SOURCE 4 GENE: VP4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTO-BLOOD GROUP ANTIGEN ROTAVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.CIGES-TOMAS,R.GOZALBO-ROVIRA,S.VILA-VICENT,J.BUESA,C.SANTISO- AUTHOR 2 BELLON,V.MONEDERO,M.J.YEBRA,J.RODRIGUEZ-DIAZ,A.MARINA REVDAT 3 17-JAN-24 6H9Z 1 REMARK REVDAT 2 03-JUL-19 6H9Z 1 JRNL REVDAT 1 12-JUN-19 6H9Z 0 JRNL AUTH R.GOZALBO-ROVIRA,J.R.CIGES-TOMAS,S.VILA-VICENT,J.BUESA, JRNL AUTH 2 C.SANTISO-BELLON,V.MONEDERO,M.J.YEBRA,A.MARINA, JRNL AUTH 3 J.RODRIGUEZ-DIAZ JRNL TITL UNRAVELING THE ROLE OF THE SECRETOR ANTIGEN IN HUMAN JRNL TITL 2 ROTAVIRUS ATTACHMENT TO HISTO-BLOOD GROUP ANTIGENS. JRNL REF PLOS PATHOG. V. 15 07865 2019 JRNL REFN ESSN 1553-7374 JRNL PMID 31226167 JRNL DOI 10.1371/JOURNAL.PPAT.1007865 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 64670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4667 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.284 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2756 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2353 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3767 ; 2.224 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5490 ; 1.167 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;33.782 ;24.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;11.740 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;10.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3101 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6H9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 104.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6H9W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350 0.1M BIS-TRIS PH5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.67600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.00300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.86750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.00300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.67600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.86750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 88 C ASP A 89 N 0.253 REMARK 500 ASP A 89 C PHE A 90 N 0.252 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 14.75 83.64 REMARK 500 SER A 38 -60.62 -127.27 REMARK 500 ASP B 18 5.58 82.62 REMARK 500 SER B 38 -67.03 -129.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 568 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 12.92 ANGSTROMS REMARK 525 HOH B 552 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 553 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 554 DISTANCE = 9.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT B 201 DBREF1 6H9Z A 4 162 UNP A0A0S0VKY7_9REOV DBREF2 6H9Z A A0A0S0VKY7 2 160 DBREF1 6H9Z B 4 162 UNP A0A0S0VKY7_9REOV DBREF2 6H9Z B A0A0S0VKY7 2 160 SEQADV 6H9Z GLY A 1 UNP A0A0S0VKY EXPRESSION TAG SEQADV 6H9Z SER A 2 UNP A0A0S0VKY EXPRESSION TAG SEQADV 6H9Z MET A 3 UNP A0A0S0VKY EXPRESSION TAG SEQADV 6H9Z ASN A 99 UNP A0A0S0VKY ASP 97 CONFLICT SEQADV 6H9Z GLY B 1 UNP A0A0S0VKY EXPRESSION TAG SEQADV 6H9Z SER B 2 UNP A0A0S0VKY EXPRESSION TAG SEQADV 6H9Z MET B 3 UNP A0A0S0VKY EXPRESSION TAG SEQADV 6H9Z ASN B 99 UNP A0A0S0VKY ASP 97 CONFLICT SEQRES 1 A 162 GLY SER MET LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 A 162 THR PRO PRO SER ASP TYR TRP ILE LEU ILE ASN SER ASN SEQRES 3 A 162 THR ASN GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP SEQRES 4 A 162 PHE TRP THR ALA VAL ILE ALA VAL GLU PRO HIS VAL ASP SEQRES 5 A 162 PRO VAL ASP ARG GLN TYR ASN VAL PHE GLY GLU ASN LYS SEQRES 6 A 162 GLN PHE ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE SEQRES 7 A 162 LEU GLU MET PHE ARG GLY SER SER GLN ASN ASP PHE TYR SEQRES 8 A 162 ASN ARG ARG THR LEU THR SER ASN THR ARG LEU VAL GLY SEQRES 9 A 162 ILE LEU LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY SEQRES 10 A 162 GLU THR PRO ARG ALA THR THR ASP SER SER ASN THR ALA SEQRES 11 A 162 ASN LEU ASN GLY ILE SER ILE THR ILE HIS SER GLU PHE SEQRES 12 A 162 TYR ILE ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU SEQRES 13 A 162 TYR ILE ASN ASN GLY LEU SEQRES 1 B 162 GLY SER MET LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 B 162 THR PRO PRO SER ASP TYR TRP ILE LEU ILE ASN SER ASN SEQRES 3 B 162 THR ASN GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP SEQRES 4 B 162 PHE TRP THR ALA VAL ILE ALA VAL GLU PRO HIS VAL ASP SEQRES 5 B 162 PRO VAL ASP ARG GLN TYR ASN VAL PHE GLY GLU ASN LYS SEQRES 6 B 162 GLN PHE ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE SEQRES 7 B 162 LEU GLU MET PHE ARG GLY SER SER GLN ASN ASP PHE TYR SEQRES 8 B 162 ASN ARG ARG THR LEU THR SER ASN THR ARG LEU VAL GLY SEQRES 9 B 162 ILE LEU LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY SEQRES 10 B 162 GLU THR PRO ARG ALA THR THR ASP SER SER ASN THR ALA SEQRES 11 B 162 ASN LEU ASN GLY ILE SER ILE THR ILE HIS SER GLU PHE SEQRES 12 B 162 TYR ILE ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU SEQRES 13 B 162 TYR ILE ASN ASN GLY LEU HET DTT A 201 8 HET DTT A 202 8 HET SO4 A 203 5 HET DTT B 201 8 HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM SO4 SULFATE ION HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 DTT 3(C4 H10 O2 S2) FORMUL 5 SO4 O4 S 2- FORMUL 7 HOH *524(H2 O) HELIX 1 AA1 GLN A 150 GLY A 161 1 12 HELIX 2 AA2 GLN B 150 GLY B 161 1 12 SHEET 1 AA111 ASP A 5 TYR A 8 0 SHEET 2 AA111 PHE A 143 PRO A 147 -1 O PHE A 143 N TYR A 8 SHEET 3 AA111 TYR A 19 ASN A 24 -1 N TRP A 20 O ILE A 146 SHEET 4 AA111 LEU A 102 TYR A 108 -1 O VAL A 103 N ILE A 23 SHEET 5 AA111 ARG A 111 GLU A 118 -1 O TRP A 113 N LEU A 106 SHEET 6 AA111 TYR A 91 SER A 98 1 N THR A 97 O GLY A 117 SHEET 7 AA111 TRP A 76 ARG A 83 -1 N GLU A 80 O ARG A 94 SHEET 8 AA111 TRP A 41 VAL A 47 -1 N ALA A 43 O MET A 81 SHEET 9 AA111 GLY A 29 THR A 35 -1 N VAL A 31 O VAL A 44 SHEET 10 AA111 SER A 136 ILE A 139 -1 O THR A 138 N GLU A 33 SHEET 11 AA111 THR A 11 PHE A 13 -1 N THR A 11 O ILE A 139 SHEET 1 AA2 6 ASP A 5 TYR A 8 0 SHEET 2 AA2 6 PHE A 143 PRO A 147 -1 O PHE A 143 N TYR A 8 SHEET 3 AA2 6 TYR A 19 ASN A 24 -1 N TRP A 20 O ILE A 146 SHEET 4 AA2 6 LEU A 102 TYR A 108 -1 O VAL A 103 N ILE A 23 SHEET 5 AA2 6 ARG A 111 GLU A 118 -1 O TRP A 113 N LEU A 106 SHEET 6 AA2 6 THR A 123 ASN A 128 -1 O THR A 123 N HIS A 116 SHEET 1 AA3 2 VAL A 51 VAL A 60 0 SHEET 2 AA3 2 GLU A 63 ASN A 71 -1 O VAL A 69 N VAL A 54 SHEET 1 AA411 ASP B 5 TYR B 8 0 SHEET 2 AA411 PHE B 143 PRO B 147 -1 O PHE B 143 N TYR B 8 SHEET 3 AA411 TYR B 19 ASN B 24 -1 N TRP B 20 O ILE B 146 SHEET 4 AA411 LEU B 102 TYR B 108 -1 O ILE B 105 N ILE B 21 SHEET 5 AA411 ARG B 111 GLU B 118 -1 O TRP B 113 N LEU B 106 SHEET 6 AA411 TYR B 91 SER B 98 1 N THR B 97 O GLY B 117 SHEET 7 AA411 TRP B 76 ARG B 83 -1 N PHE B 78 O LEU B 96 SHEET 8 AA411 TRP B 41 VAL B 47 -1 N ILE B 45 O LEU B 79 SHEET 9 AA411 VAL B 30 THR B 35 -1 N VAL B 31 O VAL B 44 SHEET 10 AA411 SER B 136 ILE B 139 -1 O THR B 138 N GLU B 33 SHEET 11 AA411 THR B 11 PHE B 13 -1 N THR B 11 O ILE B 139 SHEET 1 AA5 6 ASP B 5 TYR B 8 0 SHEET 2 AA5 6 PHE B 143 PRO B 147 -1 O PHE B 143 N TYR B 8 SHEET 3 AA5 6 TYR B 19 ASN B 24 -1 N TRP B 20 O ILE B 146 SHEET 4 AA5 6 LEU B 102 TYR B 108 -1 O ILE B 105 N ILE B 21 SHEET 5 AA5 6 ARG B 111 GLU B 118 -1 O TRP B 113 N LEU B 106 SHEET 6 AA5 6 THR B 123 ASN B 128 -1 O SER B 127 N ILE B 112 SHEET 1 AA6 2 VAL B 51 VAL B 60 0 SHEET 2 AA6 2 GLU B 63 ASN B 71 -1 O LYS B 65 N TYR B 58 CISPEP 1 GLY A 6 PRO A 7 0 8.37 CISPEP 2 THR A 119 PRO A 120 0 4.28 CISPEP 3 GLY B 6 PRO B 7 0 6.78 CISPEP 4 THR B 119 PRO B 120 0 -0.56 SITE 1 AC1 7 TYR A 8 PHE A 13 HOH A 418 PHE B 13 SITE 2 AC1 7 PRO B 16 TYR B 19 ILE B 145 SITE 1 AC2 7 SER A 17 ASP A 18 TYR A 108 GLY A 109 SITE 2 AC2 7 GLY A 110 LEU A 132 HOH A 540 SITE 1 AC3 9 ASN A 128 HOH A 321 HOH A 322 HOH A 330 SITE 2 AC3 9 HOH A 331 HOH A 343 HOH A 377 ASN B 24 SITE 3 AC3 9 ASN B 26 SITE 1 AC4 6 SER B 17 ASP B 18 GLY B 109 GLY B 110 SITE 2 AC4 6 LEU B 132 HOH B 310 CRYST1 53.352 77.735 104.006 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009615 0.00000