HEADER GENE REGULATION 07-AUG-18 6HA6 TITLE FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND TRPV3 (220- TITLE 2 246) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V COMPND 10 MEMBER 3; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: TRPV3,VANILLOID RECEPTOR-LIKE 3,VRL-3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NON-HEME, DIOXYGENASE, OXYGENASE, METAL-BINDING, TRANSCRIPTION, DSBH, KEYWDS 2 FACIAL TRIAD, ASPARAGINYL/ASPARTYL HYDROXYLASE, SIGNALING, ARD, KEYWDS 3 BETA-HYDROXYLATION, ACTIVATOR-INHIBITOR, OXIDOREDUCTASE-PEPTIDE KEYWDS 4 COMPLEX, OXIDOREDUCTASE ANKYRIN, CHANNEL, PROTEIN BINDING, ION KEYWDS 5 CHANNEL, TRPV CHANNEL, MEMBRANE PROTEIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR T.M.LEISSING,I.J.CLIFTON,B.G.SAWARD,X.LU,R.J.HOPKINSON,C.J.SCHOFIELD REVDAT 2 17-JAN-24 6HA6 1 REMARK REVDAT 1 28-AUG-19 6HA6 0 JRNL AUTH T.M.LEISSING,I.J.CLIFTON,B.G.SAWARD,X.LU,R.J.HOPKINSON, JRNL AUTH 2 C.J.SCHOFIELD JRNL TITL FACTOR INHIBITING HIF (FIH) IN COMPLEX WITH ZINC, NOG AND JRNL TITL 2 TRPV3 (220-246) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.6046 - 4.7715 1.00 3000 165 0.1775 0.1870 REMARK 3 2 4.7715 - 3.7875 1.00 2821 161 0.1357 0.1628 REMARK 3 3 3.7875 - 3.3087 1.00 2795 158 0.1743 0.1987 REMARK 3 4 3.3087 - 3.0062 1.00 2778 136 0.1988 0.2125 REMARK 3 5 3.0062 - 2.7908 1.00 2773 143 0.2012 0.2230 REMARK 3 6 2.7908 - 2.6262 1.00 2753 135 0.2003 0.2180 REMARK 3 7 2.6262 - 2.4947 1.00 2751 138 0.1909 0.2414 REMARK 3 8 2.4947 - 2.3861 1.00 2752 142 0.1899 0.2377 REMARK 3 9 2.3861 - 2.2942 1.00 2700 146 0.2078 0.2495 REMARK 3 10 2.2942 - 2.2151 1.00 2740 135 0.2585 0.2977 REMARK 3 11 2.2151 - 2.1458 1.00 2762 115 0.2292 0.3167 REMARK 3 12 2.1458 - 2.0845 1.00 2684 148 0.2328 0.2468 REMARK 3 13 2.0845 - 2.0296 1.00 2728 134 0.2512 0.2839 REMARK 3 14 2.0296 - 1.9801 1.00 2690 171 0.2725 0.2983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2966 REMARK 3 ANGLE : 0.591 4043 REMARK 3 CHIRALITY : 0.046 413 REMARK 3 PLANARITY : 0.004 533 REMARK 3 DIHEDRAL : 12.654 1729 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6213 36.9814 -21.4502 REMARK 3 T TENSOR REMARK 3 T11: 0.5516 T22: 0.7626 REMARK 3 T33: 0.9064 T12: -0.0116 REMARK 3 T13: -0.0541 T23: 0.3202 REMARK 3 L TENSOR REMARK 3 L11: 8.9773 L22: 1.6826 REMARK 3 L33: 7.3348 L12: -4.2677 REMARK 3 L13: 8.3038 L23: -3.7919 REMARK 3 S TENSOR REMARK 3 S11: -0.2982 S12: 1.3312 S13: 1.0468 REMARK 3 S21: -0.1891 S22: -0.5964 S23: -0.3600 REMARK 3 S31: -0.2697 S32: 0.7349 S33: 0.9511 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8842 18.3107 -26.6368 REMARK 3 T TENSOR REMARK 3 T11: 0.4740 T22: 0.8170 REMARK 3 T33: 0.4292 T12: 0.1191 REMARK 3 T13: 0.0857 T23: 0.1583 REMARK 3 L TENSOR REMARK 3 L11: 7.3352 L22: 4.6074 REMARK 3 L33: 5.4661 L12: 1.8019 REMARK 3 L13: 4.4768 L23: 0.2649 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: 1.0123 S13: -0.0143 REMARK 3 S21: -0.5750 S22: -0.1099 S23: 0.0351 REMARK 3 S31: 0.3470 S32: 0.2703 S33: -0.0208 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6571 28.5767 -9.4282 REMARK 3 T TENSOR REMARK 3 T11: 0.4531 T22: 0.8146 REMARK 3 T33: 0.7043 T12: 0.1322 REMARK 3 T13: 0.1366 T23: 0.0990 REMARK 3 L TENSOR REMARK 3 L11: 4.2696 L22: 3.1390 REMARK 3 L33: 3.5658 L12: -0.6193 REMARK 3 L13: 3.0501 L23: 1.1622 REMARK 3 S TENSOR REMARK 3 S11: -0.3511 S12: -0.7232 S13: 0.5673 REMARK 3 S21: 0.3818 S22: 0.1134 S23: 0.6716 REMARK 3 S31: -0.2012 S32: -0.8176 S33: 0.2671 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9276 28.8714 4.8267 REMARK 3 T TENSOR REMARK 3 T11: 0.7712 T22: 0.9866 REMARK 3 T33: 0.6896 T12: 0.1745 REMARK 3 T13: 0.0105 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 4.1512 L22: 4.1566 REMARK 3 L33: 3.7124 L12: -2.8006 REMARK 3 L13: 0.7188 L23: -1.4999 REMARK 3 S TENSOR REMARK 3 S11: -0.7168 S12: -0.8289 S13: 0.3166 REMARK 3 S21: 1.2991 S22: 0.4245 S23: 0.0282 REMARK 3 S31: -0.8787 S32: -0.7058 S33: 0.2425 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9659 26.9608 -5.6750 REMARK 3 T TENSOR REMARK 3 T11: 0.5336 T22: 0.9714 REMARK 3 T33: 0.6163 T12: 0.1631 REMARK 3 T13: 0.0916 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 4.8862 L22: 0.8908 REMARK 3 L33: 6.6777 L12: 0.1569 REMARK 3 L13: 2.5864 L23: 1.3669 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -1.2520 S13: 0.2896 REMARK 3 S21: 0.6176 S22: -0.0742 S23: 0.2416 REMARK 3 S31: 0.1233 S32: -1.3032 S33: 0.1865 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0122 18.1280 -13.2047 REMARK 3 T TENSOR REMARK 3 T11: 0.3972 T22: 0.6571 REMARK 3 T33: 0.5056 T12: 0.0222 REMARK 3 T13: 0.0440 T23: 0.1826 REMARK 3 L TENSOR REMARK 3 L11: 4.8695 L22: 1.8310 REMARK 3 L33: 3.2447 L12: -0.1330 REMARK 3 L13: 2.3571 L23: 0.1116 REMARK 3 S TENSOR REMARK 3 S11: 0.1849 S12: -0.2119 S13: -0.1028 REMARK 3 S21: 0.1621 S22: 0.0854 S23: 0.3503 REMARK 3 S31: 0.2060 S32: -0.3954 S33: -0.2615 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0687 21.4878 -7.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.3497 T22: 0.5037 REMARK 3 T33: 0.4746 T12: -0.0092 REMARK 3 T13: 0.0193 T23: 0.0782 REMARK 3 L TENSOR REMARK 3 L11: 4.8168 L22: 2.9105 REMARK 3 L33: 4.9773 L12: -1.7793 REMARK 3 L13: 2.2480 L23: -1.9373 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.2321 S13: 0.5730 REMARK 3 S21: 0.0708 S22: -0.0117 S23: 0.0549 REMARK 3 S31: -0.0609 S32: 0.2520 S33: 0.0322 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9222 24.3730 -12.9367 REMARK 3 T TENSOR REMARK 3 T11: 0.3637 T22: 0.5780 REMARK 3 T33: 0.4922 T12: 0.0152 REMARK 3 T13: 0.0298 T23: 0.1372 REMARK 3 L TENSOR REMARK 3 L11: 6.5220 L22: 1.0117 REMARK 3 L33: 2.3562 L12: -0.3770 REMARK 3 L13: 2.4481 L23: -0.3263 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 0.2495 S13: 0.5193 REMARK 3 S21: 0.0575 S22: -0.0858 S23: 0.0498 REMARK 3 S31: -0.1465 S32: -0.0671 S33: 0.0635 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1430 2.6507 -7.1199 REMARK 3 T TENSOR REMARK 3 T11: 0.5120 T22: 0.4379 REMARK 3 T33: 0.5564 T12: -0.0164 REMARK 3 T13: -0.1255 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 7.0889 L22: 5.5307 REMARK 3 L33: 3.9043 L12: -1.8552 REMARK 3 L13: 1.9711 L23: -2.8829 REMARK 3 S TENSOR REMARK 3 S11: 0.4162 S12: 0.2678 S13: -0.8343 REMARK 3 S21: -0.4898 S22: -0.0893 S23: 0.3074 REMARK 3 S31: 0.7609 S32: -0.0684 S33: -0.3652 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5024 5.8383 4.9512 REMARK 3 T TENSOR REMARK 3 T11: 0.5939 T22: 0.5117 REMARK 3 T33: 0.4075 T12: 0.0163 REMARK 3 T13: -0.1068 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.2398 L22: 6.3372 REMARK 3 L33: 6.3075 L12: -2.5580 REMARK 3 L13: -2.6435 L23: -0.5843 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -0.2852 S13: -0.3608 REMARK 3 S21: 0.5596 S22: -0.1922 S23: 0.0219 REMARK 3 S31: -0.5705 S32: -0.5425 S33: -0.0950 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 231 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6250 -2.3793 -7.3692 REMARK 3 T TENSOR REMARK 3 T11: 1.2064 T22: 1.8811 REMARK 3 T33: 1.4332 T12: -0.3065 REMARK 3 T13: 0.0408 T23: -0.3230 REMARK 3 L TENSOR REMARK 3 L11: 2.5583 L22: 7.5682 REMARK 3 L33: 2.0297 L12: -4.2667 REMARK 3 L13: 2.2598 L23: -3.6220 REMARK 3 S TENSOR REMARK 3 S11: 0.8305 S12: -0.4141 S13: -2.3538 REMARK 3 S21: -1.1399 S22: 0.0681 S23: 1.7115 REMARK 3 S31: 1.5314 S32: -1.8815 S33: -0.8073 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 236 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2301 12.1522 -3.4695 REMARK 3 T TENSOR REMARK 3 T11: 0.7819 T22: 1.1059 REMARK 3 T33: 1.7481 T12: 0.0303 REMARK 3 T13: 0.2755 T23: -0.1028 REMARK 3 L TENSOR REMARK 3 L11: 9.2912 L22: 4.6893 REMARK 3 L33: 9.2301 L12: -0.1433 REMARK 3 L13: 5.0930 L23: -5.5427 REMARK 3 S TENSOR REMARK 3 S11: -0.6487 S12: -0.5636 S13: -2.3692 REMARK 3 S21: 0.9289 S22: 1.0312 S23: 1.5232 REMARK 3 S31: -0.8706 S32: -1.0895 S33: -0.1548 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 74.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH = 7.5, 1.7 M AMMONIUM REMARK 280 SULFATE, 5.5% PEG400, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.68000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.54000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.34000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.54000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.02000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.54000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.34000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.54000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.02000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -222.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ASN D 220 REMARK 465 ILE D 221 REMARK 465 ALA D 222 REMARK 465 ILE D 223 REMARK 465 GLU D 224 REMARK 465 ARG D 225 REMARK 465 ARG D 226 REMARK 465 GLN D 227 REMARK 465 GLY D 228 REMARK 465 ASP D 229 REMARK 465 ILE D 230 REMARK 465 ALA D 245 REMARK 465 LYS D 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 GLU A 79 CD OE1 OE2 REMARK 470 GLU A 83 CD OE1 OE2 REMARK 470 LYS A 106 CD CE NZ REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CZ NH1 NH2 REMARK 470 GLN A 133 CD OE1 NE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLN A 137 CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 172 CE NZ REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 306 CD1 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 GLU A 328 OE1 OE2 REMARK 470 LEU D 233 CG CD1 CD2 REMARK 470 HIS D 244 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 41.28 -140.10 REMARK 500 ASP A 237 133.76 -39.47 REMARK 500 ARG A 238 -6.05 80.79 REMARK 500 ASN A 246 75.11 -154.08 REMARK 500 TYR A 276 -0.61 71.18 REMARK 500 ALA D 239 24.67 -144.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 107.3 REMARK 620 3 HIS A 279 NE2 90.5 85.9 REMARK 620 4 OGA A 401 O2 162.3 87.5 100.6 REMARK 620 5 OGA A 401 O2' 86.4 161.9 106.2 77.3 REMARK 620 6 HOH A 552 O 83.1 86.2 167.9 88.2 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 409 DBREF 6HA6 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 6HA6 D 220 246 UNP Q8NET8 TRPV3_HUMAN 220 246 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 D 27 ASN ILE ALA ILE GLU ARG ARG GLN GLY ASP ILE ALA ALA SEQRES 2 D 27 LEU LEU ILE ALA ALA GLY ALA ASP VAL ASN ALA HIS ALA SEQRES 3 D 27 LYS HET OGA A 401 10 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET ZN A 409 1 HETNAM OGA N-OXALYLGLYCINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 OGA C4 H5 N O5 FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 ZN ZN 2+ FORMUL 12 HOH *117(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 ASP A 104 ASN A 110 5 7 HELIX 7 AA7 PHE A 125 GLY A 139 1 15 HELIX 8 AA8 GLY A 155 GLY A 164 1 10 HELIX 9 AA9 ASN A 166 GLY A 178 1 13 HELIX 10 AB1 PRO A 220 ASP A 222 5 3 HELIX 11 AB2 GLN A 223 TYR A 228 1 6 HELIX 12 AB3 PHE A 252 VAL A 258 5 7 HELIX 13 AB4 LYS A 311 GLY A 331 1 21 HELIX 14 AB5 ASN A 332 GLN A 334 5 3 HELIX 15 AB6 GLU A 335 LYS A 345 1 11 HELIX 16 AB7 ALA D 232 ALA D 236 1 5 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 ASN A 119 LYS A 124 -1 O GLU A 121 N VAL A 92 LINK NE2 HIS A 199 ZN ZN A 409 1555 1555 2.13 LINK OD2 ASP A 201 ZN ZN A 409 1555 1555 2.05 LINK NE2 HIS A 279 ZN ZN A 409 1555 1555 2.14 LINK O2 OGA A 401 ZN ZN A 409 1555 1555 2.24 LINK O2' OGA A 401 ZN ZN A 409 1555 1555 2.06 LINK ZN ZN A 409 O HOH A 552 1555 1555 2.07 CISPEP 1 TYR A 308 PRO A 309 0 5.47 SITE 1 AC1 15 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AC1 15 ASP A 201 ASN A 205 PHE A 207 LYS A 214 SITE 3 AC1 15 HIS A 279 ILE A 281 ASN A 294 TRP A 296 SITE 4 AC1 15 ZN A 409 HOH A 552 HOH A 571 SITE 1 AC2 4 ARG A 138 GLY A 140 GLU A 141 GLU A 142 SITE 1 AC3 4 LYS A 311 ALA A 312 HOH A 530 HOH A 538 SITE 1 AC4 5 ARG A 143 GLU A 192 GLY A 193 LEU A 285 SITE 2 AC4 5 ASN A 286 SITE 1 AC5 1 GLN A 148 SITE 1 AC6 7 LYS A 99 LEU A 101 TYR A 230 SER A 240 SITE 2 AC6 7 GLN A 241 ASP A 243 HOH A 560 SITE 1 AC7 1 TRP A 167 SITE 1 AC8 2 ARG A 17 ARG A 44 SITE 1 AC9 5 HIS A 199 ASP A 201 HIS A 279 OGA A 401 SITE 2 AC9 5 HOH A 552 CRYST1 87.080 87.080 149.360 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006695 0.00000