data_6HAG # _entry.id 6HAG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6HAG pdb_00006hag 10.2210/pdb6hag/pdb WWPDB D_1200011078 ? ? BMRB 27452 ? 10.13018/BMR27452 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-09 2 'Structure model' 1 1 2019-03-20 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2020-01-29 5 'Structure model' 1 4 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_nmr_software 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_nmr_spectrometer 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 3 'Structure model' '_pdbx_nmr_software.name' 6 4 'Structure model' '_pdbx_nmr_spectrometer.model' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6HAG _pdbx_database_status.recvd_initial_deposition_date 2018-08-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 27452 _pdbx_database_related.content_type unspecified # _audit_author.name 'Weickhmann, A.K.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 2654 _citation.page_last 2665 _citation.title 'The structure of the SAM/SAH-binding riboswitch.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky1283 _citation.pdbx_database_id_PubMed 30590743 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weickhmann, A.K.' 1 ? primary 'Keller, H.' 2 ? primary 'Wurm, J.P.' 3 ? primary 'Strebitzer, E.' 4 ? primary 'Juen, M.A.' 5 ? primary 'Kremser, J.' 6 ? primary 'Weinberg, Z.' 7 ? primary 'Kreutz, C.' 8 ? primary 'Duchardt-Ferner, E.' 9 ? primary 'Wohnert, J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SAM Riboswitch' 13833.230 1 ? ? ? ? 2 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GUCACAACGGCUUCCUGACGUGGCAGAUUGAAUUAUUGGAGCA _entity_poly.pdbx_seq_one_letter_code_can GUCACAACGGCUUCCUGACGUGGCAGAUUGAAUUAUUGGAGCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name S-ADENOSYL-L-HOMOCYSTEINE _pdbx_entity_nonpoly.comp_id SAH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 C n 1 4 A n 1 5 C n 1 6 A n 1 7 A n 1 8 C n 1 9 G n 1 10 G n 1 11 C n 1 12 U n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 G n 1 18 A n 1 19 C n 1 20 G n 1 21 U n 1 22 G n 1 23 G n 1 24 C n 1 25 A n 1 26 G n 1 27 A n 1 28 U n 1 29 U n 1 30 G n 1 31 A n 1 32 A n 1 33 U n 1 34 U n 1 35 A n 1 36 U n 1 37 U n 1 38 G n 1 39 G n 1 40 A n 1 41 G n 1 42 C n 1 43 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 43 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Proteobacteria _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1224 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 C 19 19 19 C C A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 A 25 25 25 A A A . n A 1 26 G 26 26 26 G G A . n A 1 27 A 27 27 27 A A A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 U 33 33 33 U U A . n A 1 34 U 34 34 34 U U A . n A 1 35 A 35 35 35 A A A . n A 1 36 U 36 36 36 U U A . n A 1 37 U 37 37 37 U U A . n A 1 38 G 38 38 38 G G A . n A 1 39 G 39 39 39 G G A . n A 1 40 A 40 40 40 A A A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 A 43 43 43 A A A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 76 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6HAG _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6HAG _struct.title 'The structure of the SAM/SAH-binding riboswitch.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6HAG _struct_keywords.text 'riboswitch, SAM, SAH, pseudoknot, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6HAG _struct_ref.pdbx_db_accession 6HAG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6HAG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 43 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6HAG _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 43 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 43 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 8940 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 1 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 1 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 1 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A G 23 O6 ? ? A U 2 A G 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A U 2 O2 ? ? ? 1_555 A G 23 N1 ? ? A U 2 A G 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 3 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 3 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 3 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 4 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 4 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 5 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 5 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 5 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N3 ? ? ? 1_555 A C 19 N4 ? ? A A 6 A C 19 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog15 hydrog ? ? A A 6 N3 ? ? ? 1_555 A G 20 N1 ? ? A A 6 A G 20 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 A A 18 N3 ? ? A A 7 A A 18 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A A 35 N6 ? ? A A 7 A A 35 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A A 35 N1 ? ? A A 7 A A 35 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 8 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 8 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 8 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 9 A C 14 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 39 O6 ? ? A G 9 A G 39 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 39 N7 ? ? A G 9 A G 39 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 10 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 10 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 10 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 11 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 11 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 11 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 12 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 12 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 14 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 14 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 14 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 35 N1 ? ? A G 17 A A 35 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog40 hydrog ? ? A G 17 N2 ? ? ? 1_555 A U 36 O2 ? ? A G 17 A U 36 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SAH _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'binding site for residue SAH A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 C A 8 ? C A 8 . ? 1_555 ? 2 AC1 8 G A 9 ? G A 9 . ? 1_555 ? 3 AC1 8 C A 15 ? C A 15 . ? 1_555 ? 4 AC1 8 U A 16 ? U A 16 . ? 1_555 ? 5 AC1 8 G A 17 ? G A 17 . ? 1_555 ? 6 AC1 8 U A 36 ? U A 36 . ? 1_555 ? 7 AC1 8 U A 37 ? U A 37 . ? 1_555 ? 8 AC1 8 G A 38 ? G A 38 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 "C1'" A U 34 ? ? "O4'" A U 34 ? ? "C4'" A U 34 ? ? 105.24 109.70 -4.46 0.70 N 2 3 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.77 109.70 -4.93 0.70 N 3 4 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.49 109.70 -5.21 0.70 N 4 5 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.41 109.70 -5.29 0.70 N 5 6 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.46 109.70 -5.24 0.70 N 6 7 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.65 109.70 -5.05 0.70 N 7 8 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.76 109.70 -4.94 0.70 N 8 8 "C1'" A U 28 ? ? "O4'" A U 28 ? ? "C4'" A U 28 ? ? 105.33 109.70 -4.37 0.70 N 9 9 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.64 109.70 -5.06 0.70 N 10 9 "C1'" A U 28 ? ? "O4'" A U 28 ? ? "C4'" A U 28 ? ? 105.20 109.70 -4.50 0.70 N 11 10 "C1'" A G 9 ? ? "O4'" A G 9 ? ? "C4'" A G 9 ? ? 104.78 109.70 -4.92 0.70 N # _pdbx_nmr_ensemble.entry_id 6HAG _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6HAG _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;710 uM [U-13C; U-15N] env9b, 2 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 90% H2O/10% D2O ; '90% H2O/10% D2O' 13C15N solution ? 2 ;910 uM [U-15N] env9b, 2.5 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 90% H2O/10% D2O ; '90% H2O/10% D2O' 15N solution ? 3 ;800 uM [U-13C; U-15N]-Ura env9b, 1.6 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 90% H2O/10% D2O ; '90% H2O/10% D2O' 13C15N-U solution ? 4 ;750 saturated [U-5-D1/ribose-3 ,4 ,5 ,5 -D4] env9b, 3 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 90% H2O/10% D2O ; '90% H2O/10% D2O' seldeut solution ? 5 ;700 uM env9b, 0.5 mM [U-13C; U-15N] S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 90% H2O/10% D2O ; '90% H2O/10% D2O' 13C15N-SAH solution ? 6 ;800 uM [U-13C; U-15N]-Cyt, [U-13C; U-15N]-Ade env9b, 2 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 90% H2O/10% D2O ; '90% H2O/10% D2O' 13C15N-AC solution ? 7 ;850 uM [U-13C; U-15N]-Gua env9b, 2 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 50% H2O/50% D2O ; '50% H2O/50% D2O' 13C15N-G solution ? 8 ;1.2 mM env9b, 4 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 90% H2O/10% D2O ; '90% H2O/10% D2O' unlab solution ? 9 ;800 uM [U-13C; U-15N]-Cyt, [U-13C; U-15N]-Ade env9b, 2 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 100% D2O ; '100% D2O' 13C15N-AC_D2O solution ? 10 ;800 uM [U-13C; U-15N]-Ura env9b, 1.6 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 100% D2O ; '100% D2O' 13C15N-U_D2O solution ? 11 ;850 uM [U-13C; U-15N]-Gua env9b, 2 mM S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 100% D2O ; '100% D2O' 13C15N-G_D2O solution ? 12 ;480 uM [U-13C; U-15N]-Ura env9b, 750 uM [U-13C; U-15N] S-Adenosylhomocysteine, 25 mM potassium phosphate, 50 mM potassium chloride, 2 mM magnesium acetate, 100% D2O ; '100% D2O' 13C15N-U,13C15N-SAH solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 env9b 710 ? uM '[U-13C; U-15N]' 1 S-Adenosylhomocysteine 2 ? mM 'natural abundance' 1 'potassium phosphate' 25 ? mM 'natural abundance' 1 'potassium chloride' 50 ? mM 'natural abundance' 1 'magnesium acetate' 2 ? mM 'natural abundance' 2 env9b 910 ? uM '[U-15N]' 2 S-Adenosylhomocysteine 2.5 ? mM 'natural abundance' 2 'potassium phosphate' 25 ? mM 'natural abundance' 2 'potassium chloride' 50 ? mM 'natural abundance' 2 'magnesium acetate' 2 ? mM 'natural abundance' 3 env9b 800 ? uM '[U-13C; U-15N]-Ura' 3 S-Adenosylhomocysteine 1.6 ? mM 'natural abundance' 3 'potassium phosphate' 25 ? mM 'natural abundance' 3 'potassium chloride' 50 ? mM 'natural abundance' 3 'magnesium acetate' 2 ? mM 'natural abundance' 4 env9b 750 ? saturated '[U-5-D1/ribose-3 ,4 ,5 ,5 -D4]' 4 S-Adenosylhomocysteine 3 ? mM 'natural abundance' 4 'potassium phosphate' 25 ? mM 'natural abundance' 4 'potassium chloride' 50 ? mM 'natural abundance' 4 'magnesium acetate' 2 ? mM 'natural abundance' 5 env9b 700 ? uM 'natural abundance' 5 S-Adenosylhomocysteine 0.5 ? mM '[U-13C; U-15N]' 5 'potassium phosphate' 25 ? mM 'natural abundance' 5 'potassium chloride' 50 ? mM 'natural abundance' 5 'magnesium acetate' 2 ? mM 'natural abundance' 6 env9b 800 ? uM '[U-13C; U-15N]-Cyt, [U-13C; U-15N]-Ade' 6 S-Adenosylhomocysteine 2 ? mM 'natural abundance' 6 'potassium phosphate' 25 ? mM 'natural abundance' 6 'potassium chloride' 50 ? mM 'natural abundance' 6 'magnesium acetate' 2 ? mM 'natural abundance' 7 env9b 850 ? uM '[U-13C; U-15N]-Gua' 7 S-Adenosylhomocysteine 2 ? mM 'natural abundance' 7 'potassium phosphate' 25 ? mM 'natural abundance' 7 'potassium chloride' 50 ? mM 'natural abundance' 7 'magnesium acetate' 2 ? mM 'natural abundance' 8 env9b 1.2 ? mM 'natural abundance' 8 S-Adenosylhomocysteine 4 ? mM 'natural abundance' 8 'potassium phosphate' 25 ? mM 'natural abundance' 8 'potassium chloride' 50 ? mM 'natural abundance' 8 'magnesium acetate' 2 ? mM 'natural abundance' 9 env9b 800 ? uM '[U-13C; U-15N]-Cyt, [U-13C; U-15N]-Ade' 9 S-Adenosylhomocysteine 2 ? mM 'natural abundance' 9 'potassium phosphate' 25 ? mM 'natural abundance' 9 'potassium chloride' 50 ? mM 'natural abundance' 9 'magnesium acetate' 2 ? mM 'natural abundance' 10 env9b 800 ? uM '[U-13C; U-15N]-Ura' 10 S-Adenosylhomocysteine 1.6 ? mM 'natural abundance' 10 'potassium phosphate' 25 ? mM 'natural abundance' 10 'potassium chloride' 50 ? mM 'natural abundance' 10 'magnesium acetate' 2 ? mM 'natural abundance' 11 env9b 850 ? uM '[U-13C; U-15N]-Gua' 11 S-Adenosylhomocysteine 2 ? mM 'natural abundance' 11 'potassium phosphate' 25 ? mM 'natural abundance' 11 'potassium chloride' 50 ? mM 'natural abundance' 11 'magnesium acetate' 2 ? mM 'natural abundance' 12 env9b 480 ? uM '[U-13C; U-15N]-Ura' 12 S-Adenosylhomocysteine 750 ? uM '[U-13C; U-15N]' 12 'potassium phosphate' 25 ? mM 'natural abundance' 12 'potassium chloride' 50 ? mM 'natural abundance' 12 'magnesium acetate' 2 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 atm 1 6.2 50 ? ? mM 283 ? pH ? ? K 2 298 atm 1 6.2 50 ? ? mM 298 ? pH ? ? K 3 271 atm 1 6.2 50 ? ? mM 271 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 39 1 1 '2D 1H-15N HSQC' 5 isotropic 55 1 3 '2D 1H-15N HSQC' 4 isotropic 54 1 6 '2D 1H-15N HSQC' 3 isotropic 53 1 7 '2D 1H-15N HSQC' 3 isotropic 52 2 2 '2D 1H-15N HSQC NH2 only' 5 isotropic 51 2 1 '2D 1H-13C HSQC aliphatic' 5 isotropic 50 2 6 '2D 1H-13C HSQC aliphatic' 5 isotropic 49 2 3 '2D 1H-13C HSQC aliphatic' 5 isotropic 48 2 7 '2D 1H-13C HSQC aliphatic' 5 isotropic 47 2 1 '2D 1H-13C HSQC aromatic' 5 isotropic 46 2 6 '2D 1H-13C HSQC aromatic' 3 isotropic 45 2 3 '2D 1H-13C HSQC aromatic' 3 isotropic 44 2 7 '2D 1H-13C HSQC aromatic' 3 isotropic 43 3 8 '2D 1H-1H NOESY' 4 isotropic 42 2 6 '3D 1H-13C NOESY aromatic' 1 isotropic 41 2 3 '3D 1H-13C NOESY aromatic' 1 isotropic 40 2 7 '3D 1H-13C NOESY aromatic' 1 isotropic 57 2 9 '3D 1H-13C NOESY aliphatic3D 1H-13C NOESY aliphatic' 1 isotropic 56 2 10 '3D 1H-13C NOESY aliphatic' 1 isotropic 58 2 11 '3D 1H-13C NOESY aliphatic' 1 isotropic 59 3 8 '2D 1H-1H NOESY' 4 isotropic 60 2 9 '3D HCCH-TOCSY' 3 isotropic 61 2 9 '3D HCCH-COSY' 3 isotropic 62 2 10 '3D HCCH-TOCSY' 3 isotropic 63 2 10 '3D HCCH-COSY' 3 isotropic 64 2 11 '3D HCCH-TOCSY' 3 isotropic 65 2 11 '3D HCCH-COSY' 3 isotropic 66 1 8 '1D 1H-HS11ECHO' 4 isotropic 67 1 1 '2D 1H-15N HNN-COSY' 3 isotropic 68 2 7 '2D 1H-13C HNCO' 3 isotropic 69 2 3 '2D 1H-13C HNCO' 3 isotropic 70 2 6 '2D 1H-13C H5C5(C4N)H' 3 isotropic 71 2 3 '2D 1H-15N HCN aromatic' 3 isotropic 72 2 10 '2D 1H-15N HCN aliphatic' 3 isotropic 73 2 2 '2D 1H-15N 2bond-HSQC' 3 isotropic 74 2 9 'TROSY relayed HCCH-COSY' 2 isotropic 75 2 7 '2D 1H-13C long-rangeH8(C8)C5(N1)H1' 2 isotropic 76 2 3 '2D 1H-13C H5C5(C4N)H' 3 isotropic 77 2 6 '2D 1H-15N HCN aromatic' 3 isotropic 78 2 9 '2D 1H-15N HCN aliphatic' 3 isotropic 79 2 7 '2D 1H-15N HCN aromatic' 3 isotropic 80 2 11 '2D 1H-15N HCN aliphatic' 3 isotropic 81 1 12 '2D 1H-15N HNN-COSY' 1 isotropic 82 3 2 '2D 1H-15N HSQC' 4 isotropic 83 2 2 '2D lr-1H,15N-HSQC' 3 isotropic 84 2 5 '2D 1H-13C HSQC aliphatic' 1 isotropic 85 2 5 '2D 1H-13C HSQC aromatic' 1 isotropic 86 2 5 '3D HCCH-COSY' 1 isotropic # _pdbx_nmr_refine.entry_id 6HAG _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 2 'structure calculation' CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 3 'data analysis' TopSpin ? 'Bruker Biospin' 4 'chemical shift assignment' CARA ? 'Keller and Wuthrich' 5 'peak picking' CARA ? 'Keller and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 SAH N N N N 111 SAH CA C N S 112 SAH CB C N N 113 SAH CG C N N 114 SAH SD S N N 115 SAH C C N N 116 SAH O O N N 117 SAH OXT O N N 118 SAH "C5'" C N N 119 SAH "C4'" C N S 120 SAH "O4'" O N N 121 SAH "C3'" C N S 122 SAH "O3'" O N N 123 SAH "C2'" C N R 124 SAH "O2'" O N N 125 SAH "C1'" C N R 126 SAH N9 N Y N 127 SAH C8 C Y N 128 SAH N7 N Y N 129 SAH C5 C Y N 130 SAH C6 C Y N 131 SAH N6 N N N 132 SAH N1 N Y N 133 SAH C2 C Y N 134 SAH N3 N Y N 135 SAH C4 C Y N 136 SAH HN1 H N N 137 SAH HN2 H N N 138 SAH HA H N N 139 SAH HB1 H N N 140 SAH HB2 H N N 141 SAH HG1 H N N 142 SAH HG2 H N N 143 SAH HXT H N N 144 SAH "H5'1" H N N 145 SAH "H5'2" H N N 146 SAH "H4'" H N N 147 SAH "H3'" H N N 148 SAH "HO3'" H N N 149 SAH "H2'" H N N 150 SAH "HO2'" H N N 151 SAH "H1'" H N N 152 SAH H8 H N N 153 SAH HN61 H N N 154 SAH HN62 H N N 155 SAH H2 H N N 156 U OP3 O N N 157 U P P N N 158 U OP1 O N N 159 U OP2 O N N 160 U "O5'" O N N 161 U "C5'" C N N 162 U "C4'" C N R 163 U "O4'" O N N 164 U "C3'" C N S 165 U "O3'" O N N 166 U "C2'" C N R 167 U "O2'" O N N 168 U "C1'" C N R 169 U N1 N N N 170 U C2 C N N 171 U O2 O N N 172 U N3 N N N 173 U C4 C N N 174 U O4 O N N 175 U C5 C N N 176 U C6 C N N 177 U HOP3 H N N 178 U HOP2 H N N 179 U "H5'" H N N 180 U "H5''" H N N 181 U "H4'" H N N 182 U "H3'" H N N 183 U "HO3'" H N N 184 U "H2'" H N N 185 U "HO2'" H N N 186 U "H1'" H N N 187 U H3 H N N 188 U H5 H N N 189 U H6 H N N 190 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 SAH N CA sing N N 116 SAH N HN1 sing N N 117 SAH N HN2 sing N N 118 SAH CA CB sing N N 119 SAH CA C sing N N 120 SAH CA HA sing N N 121 SAH CB CG sing N N 122 SAH CB HB1 sing N N 123 SAH CB HB2 sing N N 124 SAH CG SD sing N N 125 SAH CG HG1 sing N N 126 SAH CG HG2 sing N N 127 SAH SD "C5'" sing N N 128 SAH C O doub N N 129 SAH C OXT sing N N 130 SAH OXT HXT sing N N 131 SAH "C5'" "C4'" sing N N 132 SAH "C5'" "H5'1" sing N N 133 SAH "C5'" "H5'2" sing N N 134 SAH "C4'" "O4'" sing N N 135 SAH "C4'" "C3'" sing N N 136 SAH "C4'" "H4'" sing N N 137 SAH "O4'" "C1'" sing N N 138 SAH "C3'" "O3'" sing N N 139 SAH "C3'" "C2'" sing N N 140 SAH "C3'" "H3'" sing N N 141 SAH "O3'" "HO3'" sing N N 142 SAH "C2'" "O2'" sing N N 143 SAH "C2'" "C1'" sing N N 144 SAH "C2'" "H2'" sing N N 145 SAH "O2'" "HO2'" sing N N 146 SAH "C1'" N9 sing N N 147 SAH "C1'" "H1'" sing N N 148 SAH N9 C8 sing Y N 149 SAH N9 C4 sing Y N 150 SAH C8 N7 doub Y N 151 SAH C8 H8 sing N N 152 SAH N7 C5 sing Y N 153 SAH C5 C6 sing Y N 154 SAH C5 C4 doub Y N 155 SAH C6 N6 sing N N 156 SAH C6 N1 doub Y N 157 SAH N6 HN61 sing N N 158 SAH N6 HN62 sing N N 159 SAH N1 C2 sing Y N 160 SAH C2 N3 doub Y N 161 SAH C2 H2 sing N N 162 SAH N3 C4 sing Y N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6HAG 'double helix' 6HAG 'a-form double helix' 6HAG 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 24 1_555 -0.114 -0.417 1.039 -4.995 -14.456 -4.315 1 A_G1:C24_A A 1 ? A 24 ? 19 1 1 A U 2 1_555 A G 23 1_555 1.503 -0.883 1.394 -9.045 -26.071 -23.754 2 A_U2:G23_A A 2 ? A 23 ? 28 1 1 A C 3 1_555 A G 22 1_555 -0.219 -0.339 0.940 4.701 -18.030 -9.667 3 A_C3:G22_A A 3 ? A 22 ? 19 1 1 A A 4 1_555 A U 21 1_555 0.553 0.027 -0.090 -3.095 2.752 -7.089 4 A_A4:U21_A A 4 ? A 21 ? 20 1 1 A C 5 1_555 A G 20 1_555 -0.448 -0.041 -0.314 -4.795 -2.915 -1.360 5 A_C5:G20_A A 5 ? A 20 ? 19 1 1 A A 6 1_555 A C 19 1_555 7.000 -4.301 -0.639 3.369 -9.845 2.358 6 A_A6:C19_A A 6 ? A 19 ? ? 6 1 A C 8 1_555 A G 17 1_555 0.277 -0.253 -0.676 0.421 6.177 -6.300 7 A_C8:G17_A A 8 ? A 17 ? 19 1 1 A G 10 1_555 A C 42 1_555 -0.486 -0.282 0.463 12.881 -22.283 -2.653 8 A_G10:C42_A A 10 ? A 42 ? 19 1 1 A C 11 1_555 A G 41 1_555 -0.082 -0.171 -0.124 4.934 -21.445 -1.920 9 A_C11:G41_A A 11 ? A 41 ? 19 1 1 A U 12 1_555 A A 40 1_555 0.374 -0.227 0.326 4.306 -6.341 -6.272 10 A_U12:A40_A A 12 ? A 40 ? 20 1 1 A C 14 1_555 A G 39 1_555 0.273 -0.261 0.376 -2.281 -15.315 -6.323 11 A_C14:G39_A A 14 ? A 39 ? 19 1 1 A C 15 1_555 A G 38 1_555 -0.558 -0.043 0.539 -7.156 -0.554 -3.215 12 A_C15:G38_A A 15 ? A 38 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 24 1_555 A U 2 1_555 A G 23 1_555 -0.868 -1.429 3.409 0.380 6.257 40.932 -2.697 1.269 3.158 8.884 -0.540 41.389 1 AA_G1U2:G23C24_AA A 1 ? A 24 ? A 2 ? A 23 ? 1 A U 2 1_555 A G 23 1_555 A C 3 1_555 A G 22 1_555 0.843 -1.847 2.535 3.512 -4.558 27.162 -2.931 -1.049 2.884 -9.569 -7.372 27.754 2 AA_U2C3:G22G23_AA A 2 ? A 23 ? A 3 ? A 22 ? 1 A C 3 1_555 A G 22 1_555 A A 4 1_555 A U 21 1_555 0.197 -2.020 3.813 1.217 -5.264 31.676 -2.502 -0.091 4.091 -9.556 -2.209 32.122 3 AA_C3A4:U21G22_AA A 3 ? A 22 ? A 4 ? A 21 ? 1 A A 4 1_555 A U 21 1_555 A C 5 1_555 A G 20 1_555 -0.278 -2.279 3.180 0.982 11.993 25.627 -6.953 0.756 1.928 25.333 -2.075 28.269 4 AA_A4C5:G20U21_AA A 4 ? A 21 ? A 5 ? A 20 ? 1 A C 5 1_555 A G 20 1_555 A A 6 1_555 A C 19 1_555 0.285 -0.828 3.263 1.739 6.543 65.919 -1.017 -0.192 3.184 5.997 -1.593 66.227 5 AA_C5A6:C19G20_AA A 5 ? A 20 ? A 6 ? A 19 ? 1 A A 6 1_555 A C 19 1_555 A C 8 1_555 A G 17 1_555 -0.793 -2.655 6.056 12.170 20.677 43.568 -5.739 2.458 4.132 25.677 -15.113 49.454 6 AA_A6C8:G17C19_AA A 6 ? A 19 ? A 8 ? A 17 ? 1 A G 10 1_555 A C 42 1_555 A C 11 1_555 A G 41 1_555 -0.177 -1.076 3.336 3.086 24.740 33.509 -3.950 0.553 2.076 37.195 -4.640 41.552 7 AA_G10C11:G41C42_AA A 10 ? A 42 ? A 11 ? A 41 ? 1 A C 11 1_555 A G 41 1_555 A U 12 1_555 A A 40 1_555 -0.064 -1.358 3.168 -1.922 13.689 33.194 -3.954 -0.142 2.438 22.772 3.197 35.883 8 AA_C11U12:A40G41_AA A 11 ? A 41 ? A 12 ? A 40 ? 1 A U 12 1_555 A A 40 1_555 A C 14 1_555 A G 39 1_555 -1.568 -1.731 3.352 1.786 20.649 51.186 -3.020 1.798 2.484 22.859 -1.978 54.959 9 AA_U12C14:G39A40_AA A 12 ? A 40 ? A 14 ? A 39 ? 1 A C 14 1_555 A G 39 1_555 A C 15 1_555 A G 38 1_555 0.227 -2.509 3.428 -2.149 -8.067 24.508 -2.988 -1.204 4.002 -18.335 4.885 25.870 10 AA_C14C15:G38G39_AA A 14 ? A 39 ? A 15 ? A 38 ? # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 902-B10 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 950 ? 2 AVANCE ? Bruker 900 ? 3 AVANCE ? Bruker 800 ? 4 AVANCE ? Bruker 700 ? 5 AVANCE ? Bruker 600 ? # _atom_sites.entry_id 6HAG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_