HEADER HYDROLASE 23-AUG-18 6HGZ TITLE ADP-RIBOSYLSERINE HYDROLASE ARH3 OF LATIMERIA CHALUMNAE IN COMPLEX TITLE 2 WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLHYDROLASE LIKE 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LATIMERIA CHALUMNAE; SOURCE 3 ORGANISM_COMMON: WEST INDIAN OCEAN COELACANTH; SOURCE 4 ORGANISM_TAXID: 7897; SOURCE 5 GENE: ADPRHL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADP-RIBOSYLATION, ADP-RIBOSE, ADPRHL2, ADP-RIBOSYLHYDROLASE LIKE 2, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 4 17-JAN-24 6HGZ 1 HETSYN LINK REVDAT 3 02-JAN-19 6HGZ 1 JRNL REVDAT 2 05-DEC-18 6HGZ 1 JRNL REVDAT 1 28-NOV-18 6HGZ 0 JRNL AUTH J.G.M.RACK,A.ARIZA,B.S.DROWN,C.HENFREY,E.BARTLETT,T.SHIRAI, JRNL AUTH 2 P.J.HERGENROTHER,I.AHEL JRNL TITL (ADP-RIBOSYL)HYDROLASES: STRUCTURAL BASIS FOR DIFFERENTIAL JRNL TITL 2 SUBSTRATE RECOGNITION AND INHIBITION. JRNL REF CELL CHEM BIOL V. 25 1533 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 30472116 JRNL DOI 10.1016/J.CHEMBIOL.2018.11.001 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 61.7 REMARK 3 NUMBER OF REFLECTIONS : 34857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5034 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5321 ; 0.012 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4849 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7177 ; 1.489 ; 1.675 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11371 ; 0.992 ; 1.651 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 676 ; 5.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;33.317 ;23.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 922 ;16.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5924 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 958 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2641 ; 1.058 ; 1.982 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2640 ; 1.058 ; 1.981 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3302 ; 1.773 ; 2.967 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3303 ; 1.773 ; 2.968 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2680 ; 1.363 ; 2.160 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2680 ; 1.358 ; 2.160 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3864 ; 2.132 ; 3.163 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6250 ; 3.597 ;23.851 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6233 ; 3.583 ;23.819 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 9 353 B 9 353 10914 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 649 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0590 11.1770 -10.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0246 REMARK 3 T33: 0.0432 T12: -0.0053 REMARK 3 T13: 0.0079 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.5129 L22: 1.6595 REMARK 3 L33: 1.2021 L12: 0.1696 REMARK 3 L13: 0.1244 L23: -0.0901 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.1489 S13: -0.0735 REMARK 3 S21: 0.0864 S22: -0.0097 S23: 0.0116 REMARK 3 S31: -0.0331 S32: 0.0095 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 627 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0770 -11.6260 -10.8310 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0976 REMARK 3 T33: 0.0462 T12: -0.0143 REMARK 3 T13: 0.0049 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.3408 L22: 1.7043 REMARK 3 L33: 1.0923 L12: 0.4177 REMARK 3 L13: -0.3635 L23: 0.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.1081 S12: -0.3476 S13: 0.1329 REMARK 3 S21: 0.1155 S22: -0.0242 S23: 0.0379 REMARK 3 S31: 0.0196 S32: 0.0646 S33: -0.0840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36681 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.858 REMARK 200 RESOLUTION RANGE LOW (A) : 71.953 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FOZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM ACETATE, 21 % PEG4000, REMARK 280 100 MM CITRATE PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.39650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.22300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.81900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.22300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.39650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.81900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 211 REMARK 465 GLU A 212 REMARK 465 MET A 213 REMARK 465 SER A 214 REMARK 465 ALA A 215 REMARK 465 SER A 216 REMARK 465 ASP A 217 REMARK 465 ALA A 218 REMARK 465 GLY A 219 REMARK 465 GLU A 220 REMARK 465 HIS A 221 REMARK 465 ASP A 222 REMARK 465 ARG A 223 REMARK 465 PRO A 224 REMARK 465 ASN A 225 REMARK 465 GLU A 226 REMARK 465 VAL A 227 REMARK 465 LYS A 228 REMARK 465 LYS A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 GLY B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 211 REMARK 465 GLU B 212 REMARK 465 MET B 213 REMARK 465 SER B 214 REMARK 465 ALA B 215 REMARK 465 SER B 216 REMARK 465 ASP B 217 REMARK 465 ALA B 218 REMARK 465 GLY B 219 REMARK 465 GLU B 220 REMARK 465 HIS B 221 REMARK 465 ASP B 222 REMARK 465 ARG B 223 REMARK 465 PRO B 224 REMARK 465 ASN B 225 REMARK 465 GLU B 226 REMARK 465 VAL B 227 REMARK 465 LYS B 228 REMARK 465 LYS B 354 REMARK 465 THR B 355 REMARK 465 PRO B 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 42 O HOH A 501 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 62 -164.40 -119.78 REMARK 500 PHE A 81 112.81 82.72 REMARK 500 GLN A 189 21.46 -75.34 REMARK 500 GLN A 189 23.89 -77.47 REMARK 500 HIS A 258 43.09 -146.73 REMARK 500 SER A 265 -42.02 -133.50 REMARK 500 SER A 265 -42.02 -133.50 REMARK 500 THR B 62 -164.77 -119.08 REMARK 500 PHE B 81 113.07 85.67 REMARK 500 HIS B 258 42.81 -145.47 REMARK 500 SER B 265 -42.14 -132.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 16 0.11 SIDE CHAIN REMARK 500 ARG A 207 0.12 SIDE CHAIN REMARK 500 ARG B 126 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 33 OE2 REMARK 620 2 ASP A 303 OD1 76.6 REMARK 620 3 ASP A 305 OD1 74.8 65.4 REMARK 620 4 ASP A 305 OD2 78.3 124.4 60.4 REMARK 620 5 THR A 306 OG1 165.3 92.4 91.8 100.7 REMARK 620 6 AR6 A 403 O1D 61.7 95.7 135.8 114.1 130.2 REMARK 620 7 AR6 A 403 O2D 104.5 146.4 148.0 87.9 90.1 58.5 REMARK 620 8 AR6 A 403 O3D 127.4 88.3 141.9 144.6 60.8 70.4 63.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 62 OG1 REMARK 620 2 ASP A 63 OD1 87.9 REMARK 620 3 ASP A 64 OD1 78.0 94.3 REMARK 620 4 ASP A 305 OD2 104.8 167.2 90.2 REMARK 620 5 AR6 A 403 O2D 156.0 80.3 82.2 88.5 REMARK 620 6 HOH A 587 O 106.9 89.2 174.2 85.5 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 33 OE2 REMARK 620 2 ASP B 303 OD1 72.5 REMARK 620 3 ASP B 305 OD1 75.0 68.2 REMARK 620 4 ASP B 305 OD2 80.4 125.4 59.3 REMARK 620 5 THR B 306 OG1 165.8 94.4 95.2 103.7 REMARK 620 6 AR6 B 403 O2D 102.2 143.6 146.8 87.5 91.6 REMARK 620 7 AR6 B 403 O1D 58.6 89.6 132.9 115.1 128.7 59.5 REMARK 620 8 AR6 B 403 O3D 118.4 83.0 143.3 151.0 63.9 67.7 65.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 62 OG1 REMARK 620 2 ASP B 63 OD1 86.5 REMARK 620 3 ASP B 64 OD1 77.5 92.3 REMARK 620 4 ASP B 305 OD2 103.2 170.3 89.3 REMARK 620 5 AR6 B 403 O2D 155.6 81.5 81.8 89.2 REMARK 620 6 HOH B 572 O 120.5 87.3 161.9 88.2 80.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 DBREF 6HGZ A 10 356 UNP H3BCW1 H3BCW1_LATCH 10 356 DBREF 6HGZ B 10 356 UNP H3BCW1 H3BCW1_LATCH 10 356 SEQADV 6HGZ GLY A 7 UNP H3BCW1 EXPRESSION TAG SEQADV 6HGZ PRO A 8 UNP H3BCW1 EXPRESSION TAG SEQADV 6HGZ MET A 9 UNP H3BCW1 EXPRESSION TAG SEQADV 6HGZ GLY B 7 UNP H3BCW1 EXPRESSION TAG SEQADV 6HGZ PRO B 8 UNP H3BCW1 EXPRESSION TAG SEQADV 6HGZ MET B 9 UNP H3BCW1 EXPRESSION TAG SEQRES 1 A 350 GLY PRO MET VAL SER LEU ALA GLN VAL ARG GLY ALA LEU SEQRES 2 A 350 CYS GLY ALA LEU LEU GLY ASP CYS MET GLY ALA GLU PHE SEQRES 3 A 350 GLU GLY SER ASP ALA VAL GLU LEU PRO ASP VAL LEU GLU SEQRES 4 A 350 PHE VAL ARG LEU LEU GLU LYS GLU LYS LYS ALA GLY THR SEQRES 5 A 350 LEU PHE TYR THR ASP ASP THR ALA MET THR ARG ALA VAL SEQRES 6 A 350 ILE GLN SER LEU ILE ALA LYS PRO ASP PHE ASP GLU VAL SEQRES 7 A 350 ASP MET ALA LYS ARG PHE ALA GLU GLU TYR LYS LYS GLU SEQRES 8 A 350 PRO THR ARG GLY TYR GLY ALA GLY VAL VAL GLN VAL PHE SEQRES 9 A 350 LYS LYS LEU LEU SER PRO LYS TYR SER ASP VAL PHE GLN SEQRES 10 A 350 PRO ALA ARG GLU GLN PHE ASP GLY LYS GLY SER TYR GLY SEQRES 11 A 350 ASN GLY GLY ALA MET ARG VAL ALA SER ILE ALA LEU ALA SEQRES 12 A 350 TYR PRO ASN ILE GLN ASP VAL ILE LYS PHE ALA ARG ARG SEQRES 13 A 350 SER ALA GLN LEU THR HIS ALA SER PRO LEU GLY TYR ASN SEQRES 14 A 350 GLY ALA ILE LEU GLN ALA LEU ALA VAL HIS PHE ALA LEU SEQRES 15 A 350 GLN GLY GLU LEU LYS ARG ASP THR PHE LEU GLU GLN LEU SEQRES 16 A 350 ILE GLY GLU MET GLU ARG ILE GLU GLY GLY GLU MET SER SEQRES 17 A 350 ALA SER ASP ALA GLY GLU HIS ASP ARG PRO ASN GLU VAL SEQRES 18 A 350 LYS LEU PRO PHE CYS SER ARG LEU LYS LYS ILE LYS GLU SEQRES 19 A 350 PHE LEU ALA SER SER ASN VAL PRO LYS ALA ASP ILE VAL SEQRES 20 A 350 ASP GLU LEU GLY HIS GLY ILE ALA ALA LEU GLU SER VAL SEQRES 21 A 350 PRO THR ALA ILE TYR SER PHE LEU HIS CYS MET GLU SER SEQRES 22 A 350 ASP PRO ASP ILE PRO ASP LEU TYR ASN ASN LEU GLN ARG SEQRES 23 A 350 THR ILE ILE TYR SER ILE SER LEU GLY GLY ASP THR ASP SEQRES 24 A 350 THR ILE ALA THR MET ALA GLY ALA ILE ALA GLY ALA TYR SEQRES 25 A 350 TYR GLY MET ASP GLN VAL THR PRO SER TRP LYS ARG SER SEQRES 26 A 350 CYS GLU ALA ILE VAL GLU THR GLU GLU SER ALA VAL LYS SEQRES 27 A 350 LEU TYR GLU LEU TYR CYS LYS GLN LEU LYS THR PRO SEQRES 1 B 350 GLY PRO MET VAL SER LEU ALA GLN VAL ARG GLY ALA LEU SEQRES 2 B 350 CYS GLY ALA LEU LEU GLY ASP CYS MET GLY ALA GLU PHE SEQRES 3 B 350 GLU GLY SER ASP ALA VAL GLU LEU PRO ASP VAL LEU GLU SEQRES 4 B 350 PHE VAL ARG LEU LEU GLU LYS GLU LYS LYS ALA GLY THR SEQRES 5 B 350 LEU PHE TYR THR ASP ASP THR ALA MET THR ARG ALA VAL SEQRES 6 B 350 ILE GLN SER LEU ILE ALA LYS PRO ASP PHE ASP GLU VAL SEQRES 7 B 350 ASP MET ALA LYS ARG PHE ALA GLU GLU TYR LYS LYS GLU SEQRES 8 B 350 PRO THR ARG GLY TYR GLY ALA GLY VAL VAL GLN VAL PHE SEQRES 9 B 350 LYS LYS LEU LEU SER PRO LYS TYR SER ASP VAL PHE GLN SEQRES 10 B 350 PRO ALA ARG GLU GLN PHE ASP GLY LYS GLY SER TYR GLY SEQRES 11 B 350 ASN GLY GLY ALA MET ARG VAL ALA SER ILE ALA LEU ALA SEQRES 12 B 350 TYR PRO ASN ILE GLN ASP VAL ILE LYS PHE ALA ARG ARG SEQRES 13 B 350 SER ALA GLN LEU THR HIS ALA SER PRO LEU GLY TYR ASN SEQRES 14 B 350 GLY ALA ILE LEU GLN ALA LEU ALA VAL HIS PHE ALA LEU SEQRES 15 B 350 GLN GLY GLU LEU LYS ARG ASP THR PHE LEU GLU GLN LEU SEQRES 16 B 350 ILE GLY GLU MET GLU ARG ILE GLU GLY GLY GLU MET SER SEQRES 17 B 350 ALA SER ASP ALA GLY GLU HIS ASP ARG PRO ASN GLU VAL SEQRES 18 B 350 LYS LEU PRO PHE CYS SER ARG LEU LYS LYS ILE LYS GLU SEQRES 19 B 350 PHE LEU ALA SER SER ASN VAL PRO LYS ALA ASP ILE VAL SEQRES 20 B 350 ASP GLU LEU GLY HIS GLY ILE ALA ALA LEU GLU SER VAL SEQRES 21 B 350 PRO THR ALA ILE TYR SER PHE LEU HIS CYS MET GLU SER SEQRES 22 B 350 ASP PRO ASP ILE PRO ASP LEU TYR ASN ASN LEU GLN ARG SEQRES 23 B 350 THR ILE ILE TYR SER ILE SER LEU GLY GLY ASP THR ASP SEQRES 24 B 350 THR ILE ALA THR MET ALA GLY ALA ILE ALA GLY ALA TYR SEQRES 25 B 350 TYR GLY MET ASP GLN VAL THR PRO SER TRP LYS ARG SER SEQRES 26 B 350 CYS GLU ALA ILE VAL GLU THR GLU GLU SER ALA VAL LYS SEQRES 27 B 350 LEU TYR GLU LEU TYR CYS LYS GLN LEU LYS THR PRO HET MG A 401 1 HET MG A 402 1 HET AR6 A 403 36 HET MG B 401 1 HET MG B 402 1 HET AR6 B 403 36 HET GOL B 404 6 HET GOL B 405 6 HETNAM MG MAGNESIUM ION HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM GOL GLYCEROL HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 4(MG 2+) FORMUL 5 AR6 2(C15 H23 N5 O14 P2) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *275(H2 O) HELIX 1 AA1 SER A 11 GLU A 31 1 21 HELIX 2 AA2 GLU A 39 GLU A 53 1 15 HELIX 3 AA3 THR A 62 LYS A 78 1 17 HELIX 4 AA4 ASP A 82 GLU A 97 1 16 HELIX 5 AA5 GLY A 105 SER A 115 1 11 HELIX 6 AA6 PHE A 122 LYS A 132 1 11 HELIX 7 AA7 ASN A 137 ARG A 142 1 6 HELIX 8 AA8 VAL A 143 TYR A 150 1 8 HELIX 9 AA9 ASN A 152 LEU A 166 1 15 HELIX 10 AB1 SER A 170 GLN A 189 1 20 HELIX 11 AB2 LYS A 193 GLY A 210 1 18 HELIX 12 AB3 PRO A 230 SER A 244 1 15 HELIX 13 AB4 PRO A 248 GLY A 257 1 10 HELIX 14 AB5 ALA A 261 GLU A 264 5 4 HELIX 15 AB6 SER A 265 CYS A 276 1 12 HELIX 16 AB7 ASN A 288 LEU A 300 1 13 HELIX 17 AB8 ASP A 303 GLY A 320 1 18 HELIX 18 AB9 MET A 321 VAL A 324 5 4 HELIX 19 AC1 THR A 325 ARG A 330 1 6 HELIX 20 AC2 ALA A 334 LEU A 353 1 20 HELIX 21 AC3 SER B 11 ALA B 30 1 20 HELIX 22 AC4 GLU B 31 GLU B 33 5 3 HELIX 23 AC5 GLU B 39 GLU B 53 1 15 HELIX 24 AC6 THR B 62 LYS B 78 1 17 HELIX 25 AC7 ASP B 82 GLU B 97 1 16 HELIX 26 AC8 GLY B 105 SER B 115 1 11 HELIX 27 AC9 PHE B 122 LYS B 132 1 11 HELIX 28 AD1 ASN B 137 ARG B 142 1 6 HELIX 29 AD2 VAL B 143 TYR B 150 1 8 HELIX 30 AD3 ASN B 152 LEU B 166 1 15 HELIX 31 AD4 SER B 170 GLN B 189 1 20 HELIX 32 AD5 LYS B 193 GLY B 210 1 18 HELIX 33 AD6 PRO B 230 SER B 244 1 15 HELIX 34 AD7 PRO B 248 GLY B 257 1 10 HELIX 35 AD8 ALA B 261 GLU B 264 5 4 HELIX 36 AD9 SER B 265 CYS B 276 1 12 HELIX 37 AE1 ASN B 288 LEU B 300 1 13 HELIX 38 AE2 ASP B 303 GLY B 320 1 18 HELIX 39 AE3 MET B 321 VAL B 324 5 4 HELIX 40 AE4 THR B 325 ARG B 330 1 6 HELIX 41 AE5 ALA B 334 LEU B 353 1 20 LINK OE2 GLU A 33 MG MG A 402 1555 1555 2.33 LINK OG1 THR A 62 MG MG A 401 1555 1555 2.26 LINK OD1 ASP A 63 MG MG A 401 1555 1555 2.24 LINK OD1 ASP A 64 MG MG A 401 1555 1555 2.24 LINK OD1 ASP A 303 MG MG A 402 1555 1555 2.28 LINK OD2 ASP A 305 MG MG A 401 1555 1555 2.17 LINK OD1 ASP A 305 MG MG A 402 1555 1555 2.24 LINK OD2 ASP A 305 MG MG A 402 1555 1555 2.20 LINK OG1 THR A 306 MG MG A 402 1555 1555 2.42 LINK MG MG A 401 O2D AR6 A 403 1555 1555 2.38 LINK MG MG A 401 O HOH A 587 1555 1555 2.24 LINK MG MG A 402 O1D AR6 A 403 1555 1555 2.89 LINK MG MG A 402 O2D AR6 A 403 1555 1555 2.38 LINK MG MG A 402 O3D AR6 A 403 1555 1555 2.16 LINK OE2 GLU B 33 MG MG B 402 1555 1555 2.28 LINK OG1 THR B 62 MG MG B 401 1555 1555 2.31 LINK OD1 ASP B 63 MG MG B 401 1555 1555 2.25 LINK OD1 ASP B 64 MG MG B 401 1555 1555 2.25 LINK OD1 ASP B 303 MG MG B 402 1555 1555 2.29 LINK OD2 ASP B 305 MG MG B 401 1555 1555 2.20 LINK OD1 ASP B 305 MG MG B 402 1555 1555 2.24 LINK OD2 ASP B 305 MG MG B 402 1555 1555 2.23 LINK OG1 THR B 306 MG MG B 402 1555 1555 2.37 LINK MG MG B 401 O2D AR6 B 403 1555 1555 2.34 LINK MG MG B 401 O HOH B 572 1555 1555 2.23 LINK MG MG B 402 O2D AR6 B 403 1555 1555 2.38 LINK MG MG B 402 O1D AR6 B 403 1555 1555 2.92 LINK MG MG B 402 O3D AR6 B 403 1555 1555 2.15 SITE 1 AC1 7 THR A 62 ASP A 63 ASP A 64 ASP A 305 SITE 2 AC1 7 MG A 402 AR6 A 403 HOH A 587 SITE 1 AC2 6 GLU A 33 ASP A 303 ASP A 305 THR A 306 SITE 2 AC2 6 MG A 401 AR6 A 403 SITE 1 AC3 30 GLU A 33 ASP A 63 ASP A 64 GLY A 101 SITE 2 AC3 30 GLY A 103 ALA A 104 GLY A 105 VAL A 106 SITE 3 AC3 30 PHE A 129 GLY A 133 SER A 134 TYR A 135 SITE 4 AC3 30 GLY A 136 ASN A 137 GLY A 138 HIS A 168 SITE 5 AC3 30 ILE A 260 ASP A 303 ASP A 305 THR A 306 SITE 6 AC3 30 MG A 401 MG A 402 HOH A 517 HOH A 518 SITE 7 AC3 30 HOH A 555 HOH A 581 HOH A 592 ALA B 37 SITE 8 AC3 30 ASP B 42 HOH B 515 SITE 1 AC4 7 THR B 62 ASP B 63 ASP B 64 ASP B 305 SITE 2 AC4 7 MG B 402 AR6 B 403 HOH B 572 SITE 1 AC5 6 GLU B 33 ASP B 303 ASP B 305 THR B 306 SITE 2 AC5 6 MG B 401 AR6 B 403 SITE 1 AC6 28 GLU B 33 ASP B 63 ASP B 64 GLY B 101 SITE 2 AC6 28 GLY B 103 ALA B 104 GLY B 105 VAL B 106 SITE 3 AC6 28 PHE B 129 GLY B 133 SER B 134 TYR B 135 SITE 4 AC6 28 GLY B 136 ASN B 137 GLY B 138 HIS B 168 SITE 5 AC6 28 ILE B 260 ASP B 303 ASP B 305 THR B 306 SITE 6 AC6 28 MG B 401 MG B 402 HOH B 518 HOH B 528 SITE 7 AC6 28 HOH B 535 HOH B 542 HOH B 564 HOH B 572 SITE 1 AC7 6 PRO B 79 ASP B 80 ASP B 155 PHE B 159 SITE 2 AC7 6 GLN B 352 HOH B 590 SITE 1 AC8 6 GLU A 83 GLU B 83 VAL B 84 SER B 119 SITE 2 AC8 6 ASP B 120 VAL B 121 CRYST1 66.793 97.638 106.446 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009394 0.00000