HEADER HYDROLASE 24-AUG-18 6HH3 TITLE ADP-RIBOSYLSERINE HYDROLASE ARH3 OF LATIMERIA CHALUMNAE IN COMPLEX TITLE 2 WITH ADP-HPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLHYDROLASE LIKE 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LATIMERIA CHALUMNAE; SOURCE 3 ORGANISM_COMMON: WEST INDIAN OCEAN COELACANTH; SOURCE 4 ORGANISM_TAXID: 7897; SOURCE 5 GENE: ADPRHL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADP-RIBOSYLATION, ADP-RIBOSE, ADPRHL2, ADP-RIBOSYLHYDROLASE LIKE 2, KEYWDS 2 HYDROLASE, ADP-HPD EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 4 17-JAN-24 6HH3 1 LINK REVDAT 3 02-JAN-19 6HH3 1 JRNL REVDAT 2 05-DEC-18 6HH3 1 JRNL REVDAT 1 28-NOV-18 6HH3 0 JRNL AUTH J.G.M.RACK,A.ARIZA,B.S.DROWN,C.HENFREY,E.BARTLETT,T.SHIRAI, JRNL AUTH 2 P.J.HERGENROTHER,I.AHEL JRNL TITL (ADP-RIBOSYL)HYDROLASES: STRUCTURAL BASIS FOR DIFFERENTIAL JRNL TITL 2 SUBSTRATE RECOGNITION AND INHIBITION. JRNL REF CELL CHEM BIOL V. 25 1533 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 30472116 JRNL DOI 10.1016/J.CHEMBIOL.2018.11.001 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3174 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : 1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5353 ; 0.009 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4910 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7232 ; 1.418 ; 1.674 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11517 ; 0.991 ; 1.651 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 687 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;32.735 ;23.020 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 930 ;14.868 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.293 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 706 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5964 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 966 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2658 ; 1.573 ; 2.837 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2657 ; 1.573 ; 2.837 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3324 ; 2.494 ; 4.243 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3325 ; 2.494 ; 4.243 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2695 ; 2.013 ; 3.147 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2695 ; 2.012 ; 3.147 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3892 ; 3.113 ; 4.601 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6116 ; 4.542 ;33.699 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6101 ; 4.466 ;33.639 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 8 353 B 8 353 10872 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1300 11.2470 -9.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.1942 REMARK 3 T33: 0.1334 T12: -0.0164 REMARK 3 T13: 0.0110 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.1117 L22: 1.0776 REMARK 3 L33: 0.6509 L12: 0.1935 REMARK 3 L13: 0.0880 L23: 0.0795 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.0019 S13: -0.0993 REMARK 3 S21: 0.0831 S22: -0.0550 S23: -0.0024 REMARK 3 S31: -0.0144 S32: -0.0352 S33: 0.0370 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 601 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1780 -11.7500 -10.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.2398 REMARK 3 T33: 0.1554 T12: -0.0130 REMARK 3 T13: 0.0181 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: 3.4526 L22: 1.4268 REMARK 3 L33: 0.9121 L12: 0.8805 REMARK 3 L13: -0.6484 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.1905 S12: -0.3417 S13: 0.3450 REMARK 3 S21: 0.0709 S22: -0.0497 S23: 0.1077 REMARK 3 S31: 0.0600 S32: 0.1522 S33: -0.1408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1200011659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 44.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 2.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FOZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM ACETATE, 25 % (W/V), REMARK 280 PEG4000, 100 MM CITRATE PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.42500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.81200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.12400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.81200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.42500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.12400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 GLY A 211 REMARK 465 GLU A 212 REMARK 465 MET A 213 REMARK 465 SER A 214 REMARK 465 ALA A 215 REMARK 465 SER A 216 REMARK 465 ASP A 217 REMARK 465 ALA A 218 REMARK 465 GLY A 219 REMARK 465 GLU A 220 REMARK 465 HIS A 221 REMARK 465 ASP A 222 REMARK 465 ARG A 223 REMARK 465 PRO A 224 REMARK 465 ASN A 225 REMARK 465 GLU A 226 REMARK 465 VAL A 227 REMARK 465 LYS A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 GLY B 7 REMARK 465 GLY B 211 REMARK 465 GLU B 212 REMARK 465 MET B 213 REMARK 465 SER B 214 REMARK 465 ALA B 215 REMARK 465 SER B 216 REMARK 465 ASP B 217 REMARK 465 ALA B 218 REMARK 465 GLY B 219 REMARK 465 GLU B 220 REMARK 465 HIS B 221 REMARK 465 ASP B 222 REMARK 465 ARG B 223 REMARK 465 PRO B 224 REMARK 465 ASN B 225 REMARK 465 GLU B 226 REMARK 465 VAL B 227 REMARK 465 LYS B 228 REMARK 465 LYS B 354 REMARK 465 THR B 355 REMARK 465 PRO B 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 33 CD GLU A 33 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 62 -163.38 -119.47 REMARK 500 PHE A 81 112.46 83.51 REMARK 500 GLU A 191 78.15 -116.96 REMARK 500 HIS A 258 38.38 -144.89 REMARK 500 SER A 265 -39.90 -137.83 REMARK 500 THR B 62 -162.70 -118.85 REMARK 500 PHE B 81 111.53 83.36 REMARK 500 HIS B 258 37.40 -144.11 REMARK 500 SER B 265 -40.42 -137.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 207 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 33 OE1 REMARK 620 2 ASP A 303 OD1 79.8 REMARK 620 3 ASP A 305 OD1 72.8 83.9 REMARK 620 4 THR A 306 OG1 163.5 90.8 92.9 REMARK 620 5 A1R A 403 O2N 110.2 167.9 105.2 81.0 REMARK 620 6 A1R A 403 O3N 109.6 86.1 169.2 83.0 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 62 OG1 REMARK 620 2 ASP A 63 OD1 90.8 REMARK 620 3 ASP A 64 OD1 83.6 91.9 REMARK 620 4 ASP A 305 OD2 87.0 167.9 99.6 REMARK 620 5 A1R A 403 O2N 146.7 94.3 63.4 94.1 REMARK 620 6 HOH A 613 O 106.6 84.7 169.2 84.6 106.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 33 OE1 REMARK 620 2 ASP B 303 OD1 78.8 REMARK 620 3 ASP B 305 OD1 74.9 84.5 REMARK 620 4 THR B 306 OG1 163.3 88.1 93.6 REMARK 620 5 A1R B 403 O2N 103.9 167.2 108.3 91.1 REMARK 620 6 A1R B 403 O3N 95.0 81.3 163.9 93.4 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 62 OG1 REMARK 620 2 ASP B 63 OD1 89.7 REMARK 620 3 ASP B 64 OD1 84.5 88.2 REMARK 620 4 ASP B 305 OD2 92.7 167.0 104.8 REMARK 620 5 A1R B 403 O2N 153.1 85.5 68.9 97.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1R A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1R B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 DBREF 6HH3 A 10 356 UNP H3BCW1 H3BCW1_LATCH 10 356 DBREF 6HH3 B 10 356 UNP H3BCW1 H3BCW1_LATCH 10 356 SEQADV 6HH3 GLY A 7 UNP H3BCW1 EXPRESSION TAG SEQADV 6HH3 PRO A 8 UNP H3BCW1 EXPRESSION TAG SEQADV 6HH3 MET A 9 UNP H3BCW1 EXPRESSION TAG SEQADV 6HH3 GLY B 7 UNP H3BCW1 EXPRESSION TAG SEQADV 6HH3 PRO B 8 UNP H3BCW1 EXPRESSION TAG SEQADV 6HH3 MET B 9 UNP H3BCW1 EXPRESSION TAG SEQRES 1 A 350 GLY PRO MET VAL SER LEU ALA GLN VAL ARG GLY ALA LEU SEQRES 2 A 350 CYS GLY ALA LEU LEU GLY ASP CYS MET GLY ALA GLU PHE SEQRES 3 A 350 GLU GLY SER ASP ALA VAL GLU LEU PRO ASP VAL LEU GLU SEQRES 4 A 350 PHE VAL ARG LEU LEU GLU LYS GLU LYS LYS ALA GLY THR SEQRES 5 A 350 LEU PHE TYR THR ASP ASP THR ALA MET THR ARG ALA VAL SEQRES 6 A 350 ILE GLN SER LEU ILE ALA LYS PRO ASP PHE ASP GLU VAL SEQRES 7 A 350 ASP MET ALA LYS ARG PHE ALA GLU GLU TYR LYS LYS GLU SEQRES 8 A 350 PRO THR ARG GLY TYR GLY ALA GLY VAL VAL GLN VAL PHE SEQRES 9 A 350 LYS LYS LEU LEU SER PRO LYS TYR SER ASP VAL PHE GLN SEQRES 10 A 350 PRO ALA ARG GLU GLN PHE ASP GLY LYS GLY SER TYR GLY SEQRES 11 A 350 ASN GLY GLY ALA MET ARG VAL ALA SER ILE ALA LEU ALA SEQRES 12 A 350 TYR PRO ASN ILE GLN ASP VAL ILE LYS PHE ALA ARG ARG SEQRES 13 A 350 SER ALA GLN LEU THR HIS ALA SER PRO LEU GLY TYR ASN SEQRES 14 A 350 GLY ALA ILE LEU GLN ALA LEU ALA VAL HIS PHE ALA LEU SEQRES 15 A 350 GLN GLY GLU LEU LYS ARG ASP THR PHE LEU GLU GLN LEU SEQRES 16 A 350 ILE GLY GLU MET GLU ARG ILE GLU GLY GLY GLU MET SER SEQRES 17 A 350 ALA SER ASP ALA GLY GLU HIS ASP ARG PRO ASN GLU VAL SEQRES 18 A 350 LYS LEU PRO PHE CYS SER ARG LEU LYS LYS ILE LYS GLU SEQRES 19 A 350 PHE LEU ALA SER SER ASN VAL PRO LYS ALA ASP ILE VAL SEQRES 20 A 350 ASP GLU LEU GLY HIS GLY ILE ALA ALA LEU GLU SER VAL SEQRES 21 A 350 PRO THR ALA ILE TYR SER PHE LEU HIS CYS MET GLU SER SEQRES 22 A 350 ASP PRO ASP ILE PRO ASP LEU TYR ASN ASN LEU GLN ARG SEQRES 23 A 350 THR ILE ILE TYR SER ILE SER LEU GLY GLY ASP THR ASP SEQRES 24 A 350 THR ILE ALA THR MET ALA GLY ALA ILE ALA GLY ALA TYR SEQRES 25 A 350 TYR GLY MET ASP GLN VAL THR PRO SER TRP LYS ARG SER SEQRES 26 A 350 CYS GLU ALA ILE VAL GLU THR GLU GLU SER ALA VAL LYS SEQRES 27 A 350 LEU TYR GLU LEU TYR CYS LYS GLN LEU LYS THR PRO SEQRES 1 B 350 GLY PRO MET VAL SER LEU ALA GLN VAL ARG GLY ALA LEU SEQRES 2 B 350 CYS GLY ALA LEU LEU GLY ASP CYS MET GLY ALA GLU PHE SEQRES 3 B 350 GLU GLY SER ASP ALA VAL GLU LEU PRO ASP VAL LEU GLU SEQRES 4 B 350 PHE VAL ARG LEU LEU GLU LYS GLU LYS LYS ALA GLY THR SEQRES 5 B 350 LEU PHE TYR THR ASP ASP THR ALA MET THR ARG ALA VAL SEQRES 6 B 350 ILE GLN SER LEU ILE ALA LYS PRO ASP PHE ASP GLU VAL SEQRES 7 B 350 ASP MET ALA LYS ARG PHE ALA GLU GLU TYR LYS LYS GLU SEQRES 8 B 350 PRO THR ARG GLY TYR GLY ALA GLY VAL VAL GLN VAL PHE SEQRES 9 B 350 LYS LYS LEU LEU SER PRO LYS TYR SER ASP VAL PHE GLN SEQRES 10 B 350 PRO ALA ARG GLU GLN PHE ASP GLY LYS GLY SER TYR GLY SEQRES 11 B 350 ASN GLY GLY ALA MET ARG VAL ALA SER ILE ALA LEU ALA SEQRES 12 B 350 TYR PRO ASN ILE GLN ASP VAL ILE LYS PHE ALA ARG ARG SEQRES 13 B 350 SER ALA GLN LEU THR HIS ALA SER PRO LEU GLY TYR ASN SEQRES 14 B 350 GLY ALA ILE LEU GLN ALA LEU ALA VAL HIS PHE ALA LEU SEQRES 15 B 350 GLN GLY GLU LEU LYS ARG ASP THR PHE LEU GLU GLN LEU SEQRES 16 B 350 ILE GLY GLU MET GLU ARG ILE GLU GLY GLY GLU MET SER SEQRES 17 B 350 ALA SER ASP ALA GLY GLU HIS ASP ARG PRO ASN GLU VAL SEQRES 18 B 350 LYS LEU PRO PHE CYS SER ARG LEU LYS LYS ILE LYS GLU SEQRES 19 B 350 PHE LEU ALA SER SER ASN VAL PRO LYS ALA ASP ILE VAL SEQRES 20 B 350 ASP GLU LEU GLY HIS GLY ILE ALA ALA LEU GLU SER VAL SEQRES 21 B 350 PRO THR ALA ILE TYR SER PHE LEU HIS CYS MET GLU SER SEQRES 22 B 350 ASP PRO ASP ILE PRO ASP LEU TYR ASN ASN LEU GLN ARG SEQRES 23 B 350 THR ILE ILE TYR SER ILE SER LEU GLY GLY ASP THR ASP SEQRES 24 B 350 THR ILE ALA THR MET ALA GLY ALA ILE ALA GLY ALA TYR SEQRES 25 B 350 TYR GLY MET ASP GLN VAL THR PRO SER TRP LYS ARG SER SEQRES 26 B 350 CYS GLU ALA ILE VAL GLU THR GLU GLU SER ALA VAL LYS SEQRES 27 B 350 LEU TYR GLU LEU TYR CYS LYS GLN LEU LYS THR PRO HET MG A 401 1 HET MG A 402 1 HET A1R A 403 35 HET GOL A 404 6 HET MG B 401 1 HET MG B 402 1 HET A1R B 403 35 HET GOL B 404 6 HETNAM MG MAGNESIUM ION HETNAM A1R 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2- HETNAM 2 A1R YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY) HETNAM 3 A1R PHOSPHORYL]ADENOSINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 4(MG 2+) FORMUL 5 A1R 2(C15 H24 N6 O12 P2) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *259(H2 O) HELIX 1 AA1 SER A 11 GLU A 31 1 21 HELIX 2 AA2 GLU A 39 LYS A 52 1 14 HELIX 3 AA3 THR A 62 LYS A 78 1 17 HELIX 4 AA4 ASP A 82 GLU A 97 1 16 HELIX 5 AA5 GLY A 105 SER A 115 1 11 HELIX 6 AA6 PHE A 122 LYS A 132 1 11 HELIX 7 AA7 ASN A 137 ARG A 142 1 6 HELIX 8 AA8 VAL A 143 TYR A 150 1 8 HELIX 9 AA9 ASN A 152 LEU A 166 1 15 HELIX 10 AB1 SER A 170 GLN A 189 1 20 HELIX 11 AB2 LYS A 193 GLY A 210 1 18 HELIX 12 AB3 LEU A 229 ALA A 243 1 15 HELIX 13 AB4 PRO A 248 GLY A 257 1 10 HELIX 14 AB5 ALA A 261 GLU A 264 5 4 HELIX 15 AB6 SER A 265 CYS A 276 1 12 HELIX 16 AB7 ASN A 288 LEU A 300 1 13 HELIX 17 AB8 ASP A 303 GLY A 320 1 18 HELIX 18 AB9 MET A 321 VAL A 324 5 4 HELIX 19 AC1 THR A 325 ARG A 330 1 6 HELIX 20 AC2 ALA A 334 LEU A 353 1 20 HELIX 21 AC3 SER B 11 GLU B 31 1 21 HELIX 22 AC4 GLU B 39 LYS B 52 1 14 HELIX 23 AC5 THR B 62 LYS B 78 1 17 HELIX 24 AC6 ASP B 82 GLU B 97 1 16 HELIX 25 AC7 GLY B 105 SER B 115 1 11 HELIX 26 AC8 PHE B 122 LYS B 132 1 11 HELIX 27 AC9 ASN B 137 ARG B 142 1 6 HELIX 28 AD1 VAL B 143 TYR B 150 1 8 HELIX 29 AD2 ASN B 152 LEU B 166 1 15 HELIX 30 AD3 SER B 170 GLN B 189 1 20 HELIX 31 AD4 LYS B 193 GLY B 210 1 18 HELIX 32 AD5 PRO B 230 ALA B 243 1 14 HELIX 33 AD6 PRO B 248 GLY B 257 1 10 HELIX 34 AD7 ALA B 261 GLU B 264 5 4 HELIX 35 AD8 SER B 265 CYS B 276 1 12 HELIX 36 AD9 ASN B 288 LEU B 300 1 13 HELIX 37 AE1 ASP B 303 GLY B 320 1 18 HELIX 38 AE2 MET B 321 VAL B 324 5 4 HELIX 39 AE3 THR B 325 ARG B 330 1 6 HELIX 40 AE4 ALA B 334 LEU B 353 1 20 LINK OE1 GLU A 33 MG MG A 402 1555 1555 2.34 LINK OG1 THR A 62 MG MG A 401 1555 1555 2.28 LINK OD1 ASP A 63 MG MG A 401 1555 1555 2.26 LINK OD1 ASP A 64 MG MG A 401 1555 1555 2.26 LINK OD1 ASP A 303 MG MG A 402 1555 1555 2.17 LINK OD2 ASP A 305 MG MG A 401 1555 1555 2.25 LINK OD1 ASP A 305 MG MG A 402 1555 1555 2.22 LINK OG1 THR A 306 MG MG A 402 1555 1555 2.30 LINK MG MG A 401 O2N A1R A 403 1555 1555 2.25 LINK MG MG A 401 O HOH A 613 1555 1555 2.25 LINK MG MG A 402 O2N A1R A 403 1555 1555 2.21 LINK MG MG A 402 O3N A1R A 403 1555 1555 2.19 LINK OE1 GLU B 33 MG MG B 402 1555 1555 2.33 LINK OG1 THR B 62 MG MG B 401 1555 1555 2.23 LINK OD1 ASP B 63 MG MG B 401 1555 1555 2.29 LINK OD1 ASP B 64 MG MG B 401 1555 1555 2.28 LINK OD1 ASP B 303 MG MG B 402 1555 1555 2.22 LINK OD2 ASP B 305 MG MG B 401 1555 1555 2.24 LINK OD1 ASP B 305 MG MG B 402 1555 1555 2.19 LINK OG1 THR B 306 MG MG B 402 1555 1555 2.31 LINK MG MG B 401 O2N A1R B 403 1555 1555 2.23 LINK MG MG B 402 O2N A1R B 403 1555 1555 2.23 LINK MG MG B 402 O3N A1R B 403 1555 1555 2.19 SITE 1 AC1 6 THR A 62 ASP A 63 ASP A 64 ASP A 305 SITE 2 AC1 6 A1R A 403 HOH A 613 SITE 1 AC2 5 GLU A 33 ASP A 303 ASP A 305 THR A 306 SITE 2 AC2 5 A1R A 403 SITE 1 AC3 28 ASP A 63 ASP A 64 GLY A 101 GLY A 103 SITE 2 AC3 28 ALA A 104 GLY A 105 VAL A 106 PHE A 129 SITE 3 AC3 28 GLY A 133 SER A 134 TYR A 135 GLY A 136 SITE 4 AC3 28 ASN A 137 GLY A 138 HIS A 168 ILE A 260 SITE 5 AC3 28 ASP A 303 ASP A 305 THR A 306 MG A 401 SITE 6 AC3 28 MG A 402 HOH A 534 HOH A 553 HOH A 570 SITE 7 AC3 28 HOH A 584 ALA B 37 HOH B 548 HOH B 571 SITE 1 AC4 1 ARG A 126 SITE 1 AC5 6 THR B 62 ASP B 63 ASP B 64 ASP B 305 SITE 2 AC5 6 MG B 402 A1R B 403 SITE 1 AC6 6 GLU B 33 ASP B 303 ASP B 305 THR B 306 SITE 2 AC6 6 MG B 401 A1R B 403 SITE 1 AC7 24 ASP A 42 GLU B 33 ASP B 63 ASP B 64 SITE 2 AC7 24 GLY B 101 GLY B 103 ALA B 104 GLY B 105 SITE 3 AC7 24 VAL B 106 PHE B 129 GLY B 133 SER B 134 SITE 4 AC7 24 TYR B 135 GLY B 136 ASN B 137 GLY B 138 SITE 5 AC7 24 HIS B 168 ILE B 260 ASP B 303 ASP B 305 SITE 6 AC7 24 THR B 306 MG B 401 MG B 402 HOH B 524 SITE 1 AC8 3 ASP B 80 ASP B 155 GLN B 352 CRYST1 66.850 98.248 105.624 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009468 0.00000