HEADER TRANSFERASE 06-SEP-18 6HKA TITLE THE SOLUTION STRUCTURE OF THE MICELLE-ASSOCIATED FATC DOMAIN OF THE TITLE 2 HUMAN PROTEIN KINASE ATAXIA TELANGIECTASIA MUTATED (ATM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G,SERINE-PROTEIN KINASE COMPND 3 ATM; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: IGG-BINDING PROTEIN G,ATAXIA TELANGIECTASIA MUTATED,A-T COMPND 6 MUTATED; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: N-TERMINALLY GB1-TAGGED (1-56), LINKER: THROMBIN AND COMPND 10 ENTEROKINASE SITES (57-67), FATC DOMAIN OF ATM (68-100),N-TERMINALLY COMPND 11 GB1-TAGGED (1-56), LINKER: THROMBIN AND ENTEROKINASE SITES (57-67), COMPND 12 FATC DOMAIN OF ATM (68-100) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. GROUP G, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 1320, 9606; SOURCE 5 GENE: SPG, ATM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEV2 KEYWDS ATAXIA TELANGIECTASIA MUTATED (ATM), FATC DOMAIN, KEYWDS 2 PHOSPHATIDYLINOSITOL-3-KINASE-RELATED KINASE (PIKKS), SER/THR KEYWDS 3 KINASE, TRANSFERASE, MEMBRANE BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.S.ABD RAHIM,S.A.DAMES REVDAT 4 15-MAY-24 6HKA 1 REMARK REVDAT 3 17-JUL-19 6HKA 1 REMARK REVDAT 2 08-MAY-19 6HKA 1 JRNL REMARK REVDAT 1 27-MAR-19 6HKA 0 JRNL AUTH M.S.ABD RAHIM,Y.K.CHERNIAVSKYI,D.P.TIELEMAN,S.A.DAMES JRNL TITL NMR- AND MD SIMULATION-BASED STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 THE MEMBRANE-ASSOCIATING FATC DOMAIN OF ATAXIA JRNL TITL 3 TELANGIECTASIA MUTATED. JRNL REF J.BIOL.CHEM. V. 294 7098 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30867195 JRNL DOI 10.1074/JBC.RA119.007653 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.ABD RAHIM,L.A.M.SOMMER,A.WACKER,M.SCHAAD,S.A.DAMES REMARK 1 TITL 1H, 15N AND 13C CHEMICAL SHIFT ASSIGNMENTS OF THE MICELLE REMARK 1 TITL 2 IMMERSED FAT C-TERMINAL (FATC) DOMAINS OF THE HUMAN PROTEIN REMARK 1 TITL 3 KINASES ATAXIA-TELANGIECTASIA MUTATED (ATM) AND REMARK 1 TITL 4 DNA-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT REMARK 1 TITL 5 (DNA-PKCS)FUSED TO THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G REMARK 1 TITL 6 (GB1) REMARK 1 REF BIOMOL NMR ASSIGN. V. 12 149 2018 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 29349619 REMARK 1 DOI 10.1007/S1210401897983 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011791. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 MM SODIUM CHLORIDE, 50 MM REMARK 210 TRIS, 150 MM [U-100% 2H] DPC, REMARK 210 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 13C-15N-HATMFATC, 95% H2O/5% D2O; REMARK 210 100 MM SODIUM CHLORIDE, 50 MM REMARK 210 TRIS, 150 MM [U-100% 2H] DPC, REMARK 210 0.5 MM [U-100% 15N] 15N-HATMFATC, REMARK 210 95% H2O/5% D2O; 100 MM SODIUM REMARK 210 CHLORIDE, 50 MM TRIS, 150 MM [U- REMARK 210 100% 2H] DPC, 0.4 MM [U-10% 13C] REMARK 210 13C-HATMFATC, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D C(CO)NH; 3D HNHA; REMARK 210 3D HNHB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 15N-T1; 15N-T2 REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 TYR A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 THR A 11 REMARK 465 LEU A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 THR A 18 REMARK 465 GLU A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 THR A 25 REMARK 465 ALA A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 28 REMARK 465 VAL A 29 REMARK 465 PHE A 30 REMARK 465 LYS A 31 REMARK 465 GLN A 32 REMARK 465 TYR A 33 REMARK 465 ALA A 34 REMARK 465 ASN A 35 REMARK 465 ASP A 36 REMARK 465 ASN A 37 REMARK 465 GLY A 38 REMARK 465 VAL A 39 REMARK 465 ASP A 40 REMARK 465 GLY A 41 REMARK 465 GLU A 42 REMARK 465 TRP A 43 REMARK 465 THR A 44 REMARK 465 TYR A 45 REMARK 465 ASP A 46 REMARK 465 ASP A 47 REMARK 465 ALA A 48 REMARK 465 THR A 49 REMARK 465 LYS A 50 REMARK 465 THR A 51 REMARK 465 PHE A 52 REMARK 465 THR A 53 REMARK 465 VAL A 54 REMARK 465 THR A 55 REMARK 465 GLU A 56 REMARK 465 LEU A 57 REMARK 465 VAL A 58 REMARK 465 PRO A 59 REMARK 465 ARG A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 ASP A 63 REMARK 465 ASP A 64 REMARK 465 ASP A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 88 H LEU A 89 1.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 69 112.02 175.08 REMARK 500 1 LEU A 70 11.24 48.16 REMARK 500 1 PRO A 94 -15.35 -39.58 REMARK 500 1 LYS A 97 -9.26 -49.51 REMARK 500 2 VAL A 69 -41.58 -171.89 REMARK 500 2 LEU A 70 -12.19 -45.79 REMARK 500 2 ILE A 84 -126.29 -142.29 REMARK 500 2 LEU A 92 -16.29 -47.29 REMARK 500 3 LEU A 70 -32.57 65.00 REMARK 500 3 SER A 71 114.91 166.20 REMARK 500 3 LEU A 92 -17.84 -47.00 REMARK 500 4 VAL A 69 -60.24 -172.65 REMARK 500 4 SER A 71 99.02 26.48 REMARK 500 4 PRO A 86 18.32 -61.40 REMARK 500 4 LEU A 92 -18.52 -47.42 REMARK 500 4 PRO A 94 -17.76 -41.67 REMARK 500 4 LYS A 97 -9.80 -59.83 REMARK 500 5 LEU A 70 9.09 50.07 REMARK 500 5 LEU A 79 -13.88 -48.97 REMARK 500 5 ALA A 83 -8.40 -51.42 REMARK 500 5 ILE A 84 -19.71 -42.89 REMARK 500 5 ASP A 85 172.10 -48.87 REMARK 500 5 PRO A 86 -22.89 -37.45 REMARK 500 5 PRO A 94 -14.96 -42.53 REMARK 500 5 LYS A 97 -9.69 -58.78 REMARK 500 6 LEU A 70 -32.49 65.33 REMARK 500 6 SER A 71 107.34 172.92 REMARK 500 6 GLN A 82 -65.72 -95.48 REMARK 500 6 ALA A 83 -16.06 -44.35 REMARK 500 6 ASP A 85 150.97 60.96 REMARK 500 6 LEU A 92 -19.45 -46.07 REMARK 500 6 PRO A 94 -12.73 -42.43 REMARK 500 7 VAL A 69 121.46 -172.45 REMARK 500 7 LEU A 70 10.02 49.69 REMARK 500 7 ASP A 85 129.07 -171.68 REMARK 500 7 LEU A 92 -16.77 -46.87 REMARK 500 7 PRO A 94 -17.08 -39.82 REMARK 500 8 LEU A 70 -13.19 60.70 REMARK 500 8 SER A 71 98.44 47.30 REMARK 500 8 ALA A 83 -71.76 -48.78 REMARK 500 8 ILE A 84 69.81 28.03 REMARK 500 8 ASP A 85 -53.08 177.66 REMARK 500 8 LYS A 87 -16.74 -48.59 REMARK 500 8 PHE A 93 -72.93 -159.95 REMARK 500 8 LYS A 97 -8.40 -58.60 REMARK 500 9 SER A 71 115.83 -173.49 REMARK 500 9 PRO A 86 24.33 -72.35 REMARK 500 9 PRO A 94 -14.07 -40.44 REMARK 500 9 LYS A 97 -9.38 -59.34 REMARK 500 10 LEU A 70 -6.90 58.93 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27167 RELATED DB: BMRB DBREF 6HKA A 3 56 UNP P19909 SPG2_STRSG 304 357 DBREF 6HKA A 68 100 UNP Q13315 ATM_HUMAN 3024 3056 SEQADV 6HKA MET A 1 UNP P19909 INITIATING METHIONINE SEQADV 6HKA GLN A 2 UNP P19909 EXPRESSION TAG SEQADV 6HKA ALA A 6 UNP P19909 ILE 307 CONFLICT SEQADV 6HKA LEU A 57 UNP P19909 LINKER SEQADV 6HKA VAL A 58 UNP P19909 LINKER SEQADV 6HKA PRO A 59 UNP P19909 LINKER SEQADV 6HKA ARG A 60 UNP P19909 LINKER SEQADV 6HKA GLY A 61 UNP P19909 LINKER SEQADV 6HKA SER A 62 UNP P19909 LINKER SEQADV 6HKA ASP A 63 UNP P19909 LINKER SEQADV 6HKA ASP A 64 UNP P19909 LINKER SEQADV 6HKA ASP A 65 UNP P19909 LINKER SEQADV 6HKA ASP A 66 UNP P19909 LINKER SEQADV 6HKA LYS A 67 UNP P19909 LINKER SEQRES 1 A 100 MET GLN TYR LYS LEU ALA LEU ASN GLY LYS THR LEU LYS SEQRES 2 A 100 GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 A 100 GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 A 100 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 A 100 THR VAL THR GLU LEU VAL PRO ARG GLY SER ASP ASP ASP SEQRES 6 A 100 ASP LYS THR VAL LEU SER VAL GLY GLY GLN VAL ASN LEU SEQRES 7 A 100 LEU ILE GLN GLN ALA ILE ASP PRO LYS ASN LEU SER ARG SEQRES 8 A 100 LEU PHE PRO GLY TRP LYS ALA TRP VAL HELIX 1 AA1 VAL A 72 ASP A 85 1 14 HELIX 2 AA2 PRO A 86 LEU A 92 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1