data_6HMO # _entry.id 6HMO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6HMO pdb_00006hmo 10.2210/pdb6hmo/pdb WWPDB D_1200011913 ? ? BMRB 34312 ? 10.13018/BMR34312 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-14 2 'Structure model' 1 1 2020-02-26 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_database_2.pdbx_DOI' 13 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6HMO _pdbx_database_status.recvd_initial_deposition_date 2018-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier ; _pdbx_database_related.db_id 34312 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Campagne, S.' 1 0000-0002-0094-4760 'Allain, F.H.' 2 0000-0002-2131-6237 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 1191 _citation.page_last 1198 _citation.title 'Structural basis of a small molecule targeting RNA for a specific splicing correction.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-019-0384-5 _citation.pdbx_database_id_PubMed 31636429 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Campagne, S.' 1 ? primary 'Boigner, S.' 2 ? primary 'Rudisser, S.' 3 ? primary 'Moursy, A.' 4 ? primary 'Gillioz, L.' 5 ? primary 'Knorlein, A.' 6 ? primary 'Hall, J.' 7 ? primary 'Ratni, H.' 8 ? primary 'Clery, A.' 9 ? primary 'Allain, F.H.' 10 0000-0002-2131-6237 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3') ; 3428.074 1 ? ? ? ? 2 polymer man ;RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') ; 3547.162 1 ? ? ? ? 3 non-polymer syn '2-(8-fluoranyl-2-methyl-imidazo[1,2-a]pyridin-6-yl)-7-(4-methylpiperazin-1-yl)pyrido[1,2-a]pyrimidin-4-one' 392.429 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'AUAC(PSU)(PSU)ACCUG' AUACUUACCUG A ? 2 polyribonucleotide no no GGAGUAAGUCU GGAGUAAGUCU B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '2-(8-fluoranyl-2-methyl-imidazo[1,2-a]pyridin-6-yl)-7-(4-methylpiperazin-1-yl)pyrido[1,2-a]pyrimidin-4-one' _pdbx_entity_nonpoly.comp_id GDZ # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 U n 1 3 A n 1 4 C n 1 5 PSU n 1 6 PSU n 1 7 A n 1 8 C n 1 9 C n 1 10 U n 1 11 G n 2 1 G n 2 2 G n 2 3 A n 2 4 G n 2 5 U n 2 6 A n 2 7 A n 2 8 G n 2 9 U n 2 10 C n 2 11 U n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 11 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 11 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDZ non-polymer . '2-(8-fluoranyl-2-methyl-imidazo[1,2-a]pyridin-6-yl)-7-(4-methylpiperazin-1-yl)pyrido[1,2-a]pyrimidin-4-one' SMN-C5 'C21 H21 F N6 O' 392.429 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A A . n A 1 2 U 2 2 2 U U A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 PSU 5 5 5 PSU PSU A . n A 1 6 PSU 6 6 6 PSU PSU A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 U 10 10 10 U U A . n A 1 11 G 11 11 11 G G A . n B 2 1 G 1 12 12 G G B . n B 2 2 G 2 13 13 G G B . n B 2 3 A 3 14 14 A A B . n B 2 4 G 4 15 15 G G B . n B 2 5 U 5 16 16 U U B . n B 2 6 A 6 17 17 A A B . n B 2 7 A 7 18 18 A A B . n B 2 8 G 8 19 19 G G B . n B 2 9 U 9 20 20 U U B . n B 2 10 C 10 21 21 C C B . n B 2 11 U 11 22 22 U U B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id GDZ _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id GDZ _pdbx_nonpoly_scheme.auth_mon_id C5 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6HMO _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6HMO _struct.title ;Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6HMO _struct_keywords.text ;5'-splice site bulge repair, U1 snRNA, Spinal Muscular Atrophy, bulge nucleotide, splicing modifier, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6HMO 6HMO ? 1 ? 1 2 PDB 6HMO 6HMO ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6HMO A 1 ? 11 ? 6HMO 1 ? 11 ? 1 11 2 2 6HMO B 1 ? 11 ? 6HMO 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2040 ? 1 MORE -3 ? 1 'SSA (A^2)' 4350 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 4 "O3'" ? ? ? 1_555 A PSU 5 P ? ? A C 4 A PSU 5 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A PSU 5 "O3'" ? ? ? 1_555 A PSU 6 P ? ? A PSU 5 A PSU 6 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? A PSU 6 "O3'" ? ? ? 1_555 A A 7 P ? ? A PSU 6 A A 7 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 1 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 1 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 B U 11 O4 ? ? A U 2 B U 22 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog4 hydrog ? ? A U 2 O4 ? ? ? 1_555 B U 11 N3 ? ? A U 2 B U 22 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 3 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 3 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 4 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 4 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 4 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A PSU 5 N3 ? ? ? 1_555 B A 7 N1 ? ? A PSU 5 B A 18 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog11 hydrog ? ? A PSU 5 O2 ? ? ? 1_555 B A 7 N6 ? ? A PSU 5 B A 18 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog12 hydrog ? ? A PSU 6 N3 ? ? ? 1_555 B A 6 N1 ? ? A PSU 6 B A 17 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog13 hydrog ? ? A PSU 6 O2 ? ? ? 1_555 B A 6 N6 ? ? A PSU 6 B A 17 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog14 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 7 B U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 7 B U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 8 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 8 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 8 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 9 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 9 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 9 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 10 N3 ? ? ? 1_555 B G 1 O6 ? ? A U 10 B G 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 10 O2 ? ? ? 1_555 B G 1 N1 ? ? A U 10 B G 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDZ 101 ? 4 'binding site for residue GDZ A 101' AC2 Software A PSU 5 ? 5 'binding site for residues PSU A 5 and PSU A 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 C A 8 ? C A 8 . ? 1_555 ? 2 AC1 4 C A 9 ? C A 9 . ? 1_555 ? 3 AC1 4 A B 3 ? A B 14 . ? 1_555 ? 4 AC1 4 G B 4 ? G B 15 . ? 1_555 ? 5 AC2 5 C A 4 ? C A 4 . ? 1_555 ? 6 AC2 5 A A 7 ? A A 7 . ? 1_555 ? 7 AC2 5 A B 6 ? A B 17 . ? 1_555 ? 8 AC2 5 A B 7 ? A B 18 . ? 1_555 ? 9 AC2 5 G B 8 ? G B 19 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A A 1 ? ? "C1'" A A 1 ? ? N9 A A 1 ? ? 112.96 108.50 4.46 0.70 N 2 3 "O4'" A A 1 ? ? "C1'" A A 1 ? ? N9 A A 1 ? ? 113.17 108.50 4.67 0.70 N 3 4 "O4'" A A 1 ? ? "C1'" A A 1 ? ? N9 A A 1 ? ? 112.98 108.50 4.48 0.70 N 4 5 "O4'" A A 1 ? ? "C1'" A A 1 ? ? N9 A A 1 ? ? 113.38 108.50 4.88 0.70 N 5 6 N7 A G 11 ? ? C8 A G 11 ? ? N9 A G 11 ? ? 116.49 113.10 3.39 0.50 N 6 10 "O4'" A A 1 ? ? "C1'" A A 1 ? ? N9 A A 1 ? ? 113.00 108.50 4.50 0.70 N 7 18 "O4'" A A 1 ? ? "C1'" A A 1 ? ? N9 A A 1 ? ? 113.03 108.50 4.53 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 5 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 11 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.057 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 6HMO _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6HMO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '10 mM deuterated MES, 50 mM unlabelled sodium chloride, 6 % deuterated glycerol, 100% D2O' '100% D2O' unlabelled solution '1 mM RNA duplex + 1 mM SMN-C5' 2 '10 mM deuterated MES, 50 mM unlabled sodium chloride, 6 % deuterated glycerol, 100% D2O' '100% D2O' 13C_adenine_ribose_SS solution ;1 mM RNA duplex (13C on adenine riboses of the 5'SS) + 1 mM SMN-C5 ; # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 MES 10 ? mM deuterated 1 'sodium chloride' 50 ? mM unlabelled 1 glycerol 6 ? % deuterated 2 MES 10 ? mM deuterated 2 'sodium chloride' 50 ? mM unlabled 2 glycerol 6 ? % deuterated # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure atm _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 4 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 5 1 2 '3D 1H-13C NOESY aliphatic' 2 isotropic # _pdbx_nmr_refine.entry_id 6HMO _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber 12 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'structure calculation' CYANA 3.2 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' CARA ? 'Keller and Wuthrich' 4 'peak picking' CYANA 3.2 'Guntert, Mumenthaler and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GDZ C24 C N N 111 GDZ C23 C N N 112 GDZ N28 N N N 113 GDZ C29 C N N 114 GDZ C27 C N N 115 GDZ C26 C N N 116 GDZ N25 N N N 117 GDZ C13 C N N 118 GDZ C14 C N N 119 GDZ C12 C N N 120 GDZ C17 C N N 121 GDZ C16 C N N 122 GDZ N18 N N N 123 GDZ N15 N N N 124 GDZ C21 C N N 125 GDZ O22 O N N 126 GDZ C20 C N N 127 GDZ C19 C N N 128 GDZ C1 C Y N 129 GDZ C7 C Y N 130 GDZ C2 C Y N 131 GDZ C3 C Y N 132 GDZ F4 F N N 133 GDZ C5 C Y N 134 GDZ N11 N Y N 135 GDZ N6 N Y N 136 GDZ C8 C Y N 137 GDZ C9 C Y N 138 GDZ C10 C N N 139 GDZ H24B H N N 140 GDZ H24A H N N 141 GDZ H23A H N N 142 GDZ H23B H N N 143 GDZ H29A H N N 144 GDZ H29C H N N 145 GDZ H29B H N N 146 GDZ H27A H N N 147 GDZ H27B H N N 148 GDZ H26A H N N 149 GDZ H26B H N N 150 GDZ H14 H N N 151 GDZ H12 H N N 152 GDZ H17 H N N 153 GDZ H20 H N N 154 GDZ H7 H N N 155 GDZ H2 H N N 156 GDZ H8 H N N 157 GDZ H10C H N N 158 GDZ H10B H N N 159 GDZ H10A H N N 160 PSU N1 N N N 161 PSU C2 C N N 162 PSU N3 N N N 163 PSU C4 C N N 164 PSU C5 C N N 165 PSU C6 C N N 166 PSU O2 O N N 167 PSU O4 O N N 168 PSU "C1'" C N S 169 PSU "C2'" C N R 170 PSU "O2'" O N N 171 PSU "C3'" C N S 172 PSU "C4'" C N R 173 PSU "O3'" O N N 174 PSU "O4'" O N N 175 PSU "C5'" C N N 176 PSU "O5'" O N N 177 PSU P P N N 178 PSU OP1 O N N 179 PSU OP2 O N N 180 PSU OP3 O N N 181 PSU HN1 H N N 182 PSU HN3 H N N 183 PSU H6 H N N 184 PSU "H1'" H N N 185 PSU "H2'" H N N 186 PSU "HO2'" H N N 187 PSU "H3'" H N N 188 PSU "H4'" H N N 189 PSU "HO3'" H N N 190 PSU "H5'" H N N 191 PSU "H5''" H N N 192 PSU HOP2 H N N 193 PSU HOP3 H N N 194 U OP3 O N N 195 U P P N N 196 U OP1 O N N 197 U OP2 O N N 198 U "O5'" O N N 199 U "C5'" C N N 200 U "C4'" C N R 201 U "O4'" O N N 202 U "C3'" C N S 203 U "O3'" O N N 204 U "C2'" C N R 205 U "O2'" O N N 206 U "C1'" C N R 207 U N1 N N N 208 U C2 C N N 209 U O2 O N N 210 U N3 N N N 211 U C4 C N N 212 U O4 O N N 213 U C5 C N N 214 U C6 C N N 215 U HOP3 H N N 216 U HOP2 H N N 217 U "H5'" H N N 218 U "H5''" H N N 219 U "H4'" H N N 220 U "H3'" H N N 221 U "HO3'" H N N 222 U "H2'" H N N 223 U "HO2'" H N N 224 U "H1'" H N N 225 U H3 H N N 226 U H5 H N N 227 U H6 H N N 228 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GDZ F4 C3 sing N N 116 GDZ N11 C5 doub Y N 117 GDZ N11 C9 sing Y N 118 GDZ C10 C9 sing N N 119 GDZ C3 C5 sing Y N 120 GDZ C3 C2 doub Y N 121 GDZ C5 N6 sing Y N 122 GDZ C9 C8 doub Y N 123 GDZ C2 C1 sing Y N 124 GDZ N6 C8 sing Y N 125 GDZ N6 C7 sing Y N 126 GDZ C1 C7 doub Y N 127 GDZ C1 C19 sing N N 128 GDZ N18 C19 sing N N 129 GDZ N18 C16 doub N N 130 GDZ C19 C20 doub N N 131 GDZ C17 C16 sing N N 132 GDZ C17 C12 doub N N 133 GDZ C16 N15 sing N N 134 GDZ C20 C21 sing N N 135 GDZ C12 C13 sing N N 136 GDZ N15 C21 sing N N 137 GDZ N15 C14 sing N N 138 GDZ C21 O22 doub N N 139 GDZ C14 C13 doub N N 140 GDZ C13 N25 sing N N 141 GDZ C24 N25 sing N N 142 GDZ C24 C23 sing N N 143 GDZ N25 C26 sing N N 144 GDZ C23 N28 sing N N 145 GDZ C26 C27 sing N N 146 GDZ N28 C27 sing N N 147 GDZ N28 C29 sing N N 148 GDZ C24 H24B sing N N 149 GDZ C24 H24A sing N N 150 GDZ C23 H23A sing N N 151 GDZ C23 H23B sing N N 152 GDZ C29 H29A sing N N 153 GDZ C29 H29C sing N N 154 GDZ C29 H29B sing N N 155 GDZ C27 H27A sing N N 156 GDZ C27 H27B sing N N 157 GDZ C26 H26A sing N N 158 GDZ C26 H26B sing N N 159 GDZ C14 H14 sing N N 160 GDZ C12 H12 sing N N 161 GDZ C17 H17 sing N N 162 GDZ C20 H20 sing N N 163 GDZ C7 H7 sing N N 164 GDZ C2 H2 sing N N 165 GDZ C8 H8 sing N N 166 GDZ C10 H10C sing N N 167 GDZ C10 H10B sing N N 168 GDZ C10 H10A sing N N 169 PSU N1 C2 sing N N 170 PSU N1 C6 sing N N 171 PSU N1 HN1 sing N N 172 PSU C2 N3 sing N N 173 PSU C2 O2 doub N N 174 PSU N3 C4 sing N N 175 PSU N3 HN3 sing N N 176 PSU C4 C5 sing N N 177 PSU C4 O4 doub N N 178 PSU C5 C6 doub N N 179 PSU C5 "C1'" sing N N 180 PSU C6 H6 sing N N 181 PSU "C1'" "C2'" sing N N 182 PSU "C1'" "O4'" sing N N 183 PSU "C1'" "H1'" sing N N 184 PSU "C2'" "O2'" sing N N 185 PSU "C2'" "C3'" sing N N 186 PSU "C2'" "H2'" sing N N 187 PSU "O2'" "HO2'" sing N N 188 PSU "C3'" "C4'" sing N N 189 PSU "C3'" "O3'" sing N N 190 PSU "C3'" "H3'" sing N N 191 PSU "C4'" "O4'" sing N N 192 PSU "C4'" "C5'" sing N N 193 PSU "C4'" "H4'" sing N N 194 PSU "O3'" "HO3'" sing N N 195 PSU "C5'" "O5'" sing N N 196 PSU "C5'" "H5'" sing N N 197 PSU "C5'" "H5''" sing N N 198 PSU "O5'" P sing N N 199 PSU P OP1 doub N N 200 PSU P OP2 sing N N 201 PSU P OP3 sing N N 202 PSU OP2 HOP2 sing N N 203 PSU OP3 HOP3 sing N N 204 U OP3 P sing N N 205 U OP3 HOP3 sing N N 206 U P OP1 doub N N 207 U P OP2 sing N N 208 U P "O5'" sing N N 209 U OP2 HOP2 sing N N 210 U "O5'" "C5'" sing N N 211 U "C5'" "C4'" sing N N 212 U "C5'" "H5'" sing N N 213 U "C5'" "H5''" sing N N 214 U "C4'" "O4'" sing N N 215 U "C4'" "C3'" sing N N 216 U "C4'" "H4'" sing N N 217 U "O4'" "C1'" sing N N 218 U "C3'" "O3'" sing N N 219 U "C3'" "C2'" sing N N 220 U "C3'" "H3'" sing N N 221 U "O3'" "HO3'" sing N N 222 U "C2'" "O2'" sing N N 223 U "C2'" "C1'" sing N N 224 U "C2'" "H2'" sing N N 225 U "O2'" "HO2'" sing N N 226 U "C1'" N1 sing N N 227 U "C1'" "H1'" sing N N 228 U N1 C2 sing N N 229 U N1 C6 sing N N 230 U C2 O2 doub N N 231 U C2 N3 sing N N 232 U N3 C4 sing N N 233 U N3 H3 sing N N 234 U C4 O4 doub N N 235 U C4 C5 sing N N 236 U C5 C6 doub N N 237 U C5 H5 sing N N 238 U C6 H6 sing N N 239 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6HMO 'double helix' 6HMO 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 B U 11 1_555 0.160 0.013 0.080 -12.429 -31.754 -15.328 1 A_A1:U22_B A 1 ? B 22 ? 20 1 1 A A 3 1_555 B U 9 1_555 0.204 0.033 -0.280 -8.758 -6.061 -4.567 2 A_A3:U20_B A 3 ? B 20 ? 20 1 1 A C 4 1_555 B G 8 1_555 0.243 -0.108 -0.209 6.114 -11.633 -0.523 3 A_C4:G19_B A 4 ? B 19 ? 19 1 1 A PSU 5 1_555 B A 7 1_555 -0.468 -0.082 -0.373 8.268 -7.342 -4.491 4 A_PSU5:A18_B A 5 ? B 18 ? 21 1 1 A PSU 6 1_555 B A 6 1_555 -0.096 -0.091 -0.313 4.875 -7.606 -2.183 5 A_PSU6:A17_B A 6 ? B 17 ? 21 1 1 A A 7 1_555 B U 5 1_555 0.276 -0.109 -0.641 0.447 -10.302 2.383 6 A_A7:U16_B A 7 ? B 16 ? 20 1 1 A C 8 1_555 B G 4 1_555 0.590 -0.144 -0.635 15.582 -0.957 -0.337 7 A_C8:G15_B A 8 ? B 15 ? 19 1 1 A C 9 1_555 B G 2 1_555 0.112 -0.032 0.117 -4.453 4.509 -5.729 8 A_C9:G13_B A 9 ? B 13 ? 19 1 1 A U 10 1_555 B G 1 1_555 2.286 -0.552 -0.640 6.721 3.086 -1.255 9 A_U10:G12_B A 10 ? B 12 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 3 1_555 B U 9 1_555 A C 4 1_555 B G 8 1_555 0.098 -2.012 3.098 -0.073 0.490 28.422 -4.202 -0.215 3.063 0.997 0.149 28.426 1 AA_A3C4:G19U20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A C 4 1_555 B G 8 1_555 A PSU 5 1_555 B A 7 1_555 -0.206 -1.986 3.356 0.885 9.710 26.924 -6.051 0.602 2.495 20.038 -1.827 28.604 2 AA_C4PSU5:A18G19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A PSU 5 1_555 B A 7 1_555 A PSU 6 1_555 B A 6 1_555 0.301 -1.791 3.534 -0.838 8.624 30.849 -4.816 -0.698 2.930 15.824 1.538 32.015 3 AA_PSU5PSU6:A17A18_BB A 5 ? B 18 ? A 6 ? B 17 ? 1 A PSU 6 1_555 B A 6 1_555 A A 7 1_555 B U 5 1_555 0.232 -1.740 3.740 4.224 11.855 30.297 -5.239 0.357 2.881 21.550 -7.678 32.750 4 AA_PSU6A7:U16A17_BB A 6 ? B 17 ? A 7 ? B 16 ? 1 A A 7 1_555 B U 5 1_555 A C 8 1_555 B G 4 1_555 -0.445 -1.761 3.143 -2.285 7.987 25.607 -5.604 0.436 2.518 17.444 4.992 26.899 5 AA_A7C8:G15U16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A C 8 1_555 B G 4 1_555 A C 9 1_555 B G 2 1_555 1.854 -2.397 6.838 -23.269 5.778 42.532 -3.777 -5.725 4.913 7.313 29.452 48.550 6 AA_C8C9:G13G15_BB A 8 ? B 15 ? A 9 ? B 13 ? 1 A C 9 1_555 B G 2 1_555 A U 10 1_555 B G 1 1_555 0.633 -2.119 3.133 4.739 2.295 34.604 -3.853 -0.374 3.048 3.830 -7.910 34.990 7 AA_C9U10:G12G13_BB A 9 ? B 13 ? A 10 ? B 12 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 '900 Avance' ? Bruker 900 'cryo probe' 2 '600 Avance' ? Bruker 600 'cryo probe' # _atom_sites.entry_id 6HMO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H N O P # loop_