HEADER TRANSFERASE 12-SEP-18 6HMP TITLE CRYSTAL STRUCTURE OF HUMAN CASEIN KINASE I DELTA IN COMPLEX WITH A TITLE 2 PHOTOSWITCHABLE 2-AZOIMIDAZOLE-BASED INHIBITOR (COMPOUND 3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE I ISOFORM DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CKID,TAU-PROTEIN KINASE CSNK1D; COMPND 5 EC: 2.7.11.1,2.7.11.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK1D, HCKID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASE, PHOTOSWITCHABLE INHIBITOR, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PICHLO,M.SCHEHR,J.CHARL,E.BRUNSTEIN,C.PEIFER,U.BAUMANN REVDAT 2 24-JAN-24 6HMP 1 REMARK REVDAT 1 11-SEP-19 6HMP 0 JRNL AUTH M.SCHEHR,C.IANES,J.WEISNER,L.HEINTZE,M.P.MULLER,C.PICHLO, JRNL AUTH 2 J.CHARL,E.BRUNSTEIN,J.EWERT,M.LEHR,U.BAUMANN,D.RAUH, JRNL AUTH 3 U.KNIPPSCHILD,C.PEIFER,R.HERGES JRNL TITL 2-AZO-, 2-DIAZOCINE-THIAZOLS AND 2-AZO-IMIDAZOLES AS JRNL TITL 2 PHOTOSWITCHABLE KINASE INHIBITORS: LIMITATIONS AND PITFALLS JRNL TITL 3 OF THE PHOTOSWITCHABLE INHIBITOR APPROACH. JRNL REF PHOTOCHEM. PHOTOBIOL. SCI. V. 18 1398 2019 JRNL REFN ISSN 1474-9092 JRNL PMID 30924488 JRNL DOI 10.1039/C9PP00010K REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 37898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5403 - 4.9123 1.00 2694 135 0.1750 0.1943 REMARK 3 2 4.9123 - 3.8996 1.00 2665 135 0.1355 0.1505 REMARK 3 3 3.8996 - 3.4069 1.00 2630 140 0.1625 0.2117 REMARK 3 4 3.4069 - 3.0954 1.00 2608 141 0.1775 0.2132 REMARK 3 5 3.0954 - 2.8736 1.00 2611 132 0.1859 0.2616 REMARK 3 6 2.8736 - 2.7042 1.00 2606 138 0.1861 0.2248 REMARK 3 7 2.7042 - 2.5688 1.00 2615 139 0.1948 0.1998 REMARK 3 8 2.5688 - 2.4570 1.00 2615 140 0.1963 0.2504 REMARK 3 9 2.4570 - 2.3624 1.00 2615 133 0.2025 0.2407 REMARK 3 10 2.3624 - 2.2809 1.00 2587 152 0.2174 0.2619 REMARK 3 11 2.2809 - 2.2095 1.00 2581 127 0.2355 0.2815 REMARK 3 12 2.2095 - 2.1464 1.00 2636 144 0.2523 0.2839 REMARK 3 13 2.1464 - 2.0899 0.95 2477 116 0.2979 0.3295 REMARK 3 14 2.0899 - 2.0389 0.81 2068 118 0.3294 0.3593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4807 REMARK 3 ANGLE : 0.734 6480 REMARK 3 CHIRALITY : 0.045 665 REMARK 3 PLANARITY : 0.004 825 REMARK 3 DIHEDRAL : 13.047 2825 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9185 7.6703 14.0159 REMARK 3 T TENSOR REMARK 3 T11: 0.5080 T22: 0.6476 REMARK 3 T33: 0.6440 T12: -0.0218 REMARK 3 T13: 0.0993 T23: 0.1469 REMARK 3 L TENSOR REMARK 3 L11: 0.1452 L22: 0.0712 REMARK 3 L33: 0.0752 L12: -0.0031 REMARK 3 L13: 0.0145 L23: 0.0143 REMARK 3 S TENSOR REMARK 3 S11: 0.1690 S12: 0.4042 S13: 0.6152 REMARK 3 S21: 0.0734 S22: 0.0495 S23: -0.0056 REMARK 3 S31: -0.2117 S32: 0.5993 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8642 0.1834 20.8507 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 1.1320 REMARK 3 T33: 0.5418 T12: 0.0638 REMARK 3 T13: 0.0506 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.5079 L22: 0.3824 REMARK 3 L33: 0.4751 L12: -0.1762 REMARK 3 L13: 0.1575 L23: -0.3662 REMARK 3 S TENSOR REMARK 3 S11: -0.2641 S12: -0.1692 S13: -0.0184 REMARK 3 S21: 0.0552 S22: 0.2426 S23: -0.3033 REMARK 3 S31: 0.1964 S32: 1.0836 S33: -0.0055 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6347 1.3257 33.6231 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.2516 REMARK 3 T33: 0.2890 T12: 0.0139 REMARK 3 T13: -0.0027 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.0183 L22: 0.7398 REMARK 3 L33: 3.4265 L12: 0.0776 REMARK 3 L13: 0.0535 L23: -0.2417 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.0761 S13: -0.0189 REMARK 3 S21: 0.0553 S22: -0.0131 S23: -0.0576 REMARK 3 S31: 0.1315 S32: 0.1136 S33: -0.0008 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9965 -1.9864 19.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.3683 T22: 0.6220 REMARK 3 T33: 0.3536 T12: -0.1060 REMARK 3 T13: 0.0196 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.1067 L22: 0.1709 REMARK 3 L33: 0.3400 L12: 0.0077 REMARK 3 L13: 0.0109 L23: 0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.2793 S12: -0.2511 S13: 0.0427 REMARK 3 S21: -0.2362 S22: -0.2383 S23: 0.2079 REMARK 3 S31: 0.6315 S32: -0.9108 S33: -0.0097 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9284 -24.3720 -4.6987 REMARK 3 T TENSOR REMARK 3 T11: 0.6286 T22: 0.6376 REMARK 3 T33: 0.5234 T12: 0.0281 REMARK 3 T13: 0.0576 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.1644 L22: 0.2159 REMARK 3 L33: 0.1319 L12: -0.0082 REMARK 3 L13: 0.1322 L23: 0.0404 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: -0.5636 S13: 0.3856 REMARK 3 S21: 0.7715 S22: -0.1094 S23: 0.4540 REMARK 3 S31: -0.2861 S32: -0.2335 S33: -0.0013 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2655 -26.8495 -0.6781 REMARK 3 T TENSOR REMARK 3 T11: 0.6834 T22: 0.6494 REMARK 3 T33: 0.4469 T12: -0.1022 REMARK 3 T13: 0.0009 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.3006 L22: 0.2404 REMARK 3 L33: 0.2061 L12: -0.2511 REMARK 3 L13: 0.1995 L23: -0.1950 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: -0.5041 S13: 0.1765 REMARK 3 S21: 0.6843 S22: -0.3188 S23: -0.0421 REMARK 3 S31: -0.1986 S32: 0.0489 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8167 -35.6934 18.4512 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.2989 REMARK 3 T33: 0.2897 T12: 0.0504 REMARK 3 T13: -0.0081 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.4639 L22: 0.9108 REMARK 3 L33: 1.7356 L12: 0.3555 REMARK 3 L13: 0.6938 L23: 0.2923 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.1470 S13: 0.0689 REMARK 3 S21: -0.0747 S22: 0.0286 S23: -0.0215 REMARK 3 S31: -0.1836 S32: 0.1096 S33: -0.0027 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000021 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XDS 20180126 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.039 REMARK 200 RESOLUTION RANGE LOW (A) : 46.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (1.12_2829: 000) REMARK 200 STARTING MODEL: 5MQV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE TRIBASIC PH 7.0 REMARK 280 20 % W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.11150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 32 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 LYS B 45 REMARK 465 GLY B 215 REMARK 465 LEU B 216 REMARK 465 LYS B 217 REMARK 465 ALA B 218 REMARK 465 ALA B 219 REMARK 465 THR B 220 REMARK 465 LYS B 221 REMARK 465 ARG B 222 REMARK 465 GLN B 223 REMARK 465 LYS B 224 REMARK 465 TYR B 225 REMARK 465 GLU B 226 REMARK 465 LYS B 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 THR A 44 OG1 CG2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 HIS A 46 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 PHE B 20 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 46 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 9 HH21 ARG B 69 1.59 REMARK 500 O HOH A 428 O HOH A 438 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -74.30 -123.88 REMARK 500 LYS A 43 19.03 -140.92 REMARK 500 LYS A 45 -151.70 -161.20 REMARK 500 ASN A 123 14.85 82.11 REMARK 500 ASP A 128 51.19 -147.21 REMARK 500 ASP A 149 99.76 75.84 REMARK 500 HIS A 162 18.98 59.31 REMARK 500 ALA A 219 -73.63 -80.48 REMARK 500 GLN B 48 -30.22 -130.77 REMARK 500 ASN B 123 13.77 81.29 REMARK 500 ASP B 128 53.46 -147.38 REMARK 500 ASP B 149 99.73 76.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GEW A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GEW B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 DBREF 6HMP A 1 294 UNP P48730 KC1D_HUMAN 1 294 DBREF 6HMP B 1 294 UNP P48730 KC1D_HUMAN 1 294 SEQADV 6HMP MET A -19 UNP P48730 INITIATING METHIONINE SEQADV 6HMP GLY A -18 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER A -17 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER A -16 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS A -15 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS A -14 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS A -13 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS A -12 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS A -11 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS A -10 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER A -9 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER A -8 UNP P48730 EXPRESSION TAG SEQADV 6HMP GLY A -7 UNP P48730 EXPRESSION TAG SEQADV 6HMP LEU A -6 UNP P48730 EXPRESSION TAG SEQADV 6HMP VAL A -5 UNP P48730 EXPRESSION TAG SEQADV 6HMP PRO A -4 UNP P48730 EXPRESSION TAG SEQADV 6HMP ARG A -3 UNP P48730 EXPRESSION TAG SEQADV 6HMP GLY A -2 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER A -1 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS A 0 UNP P48730 EXPRESSION TAG SEQADV 6HMP MET B -19 UNP P48730 INITIATING METHIONINE SEQADV 6HMP GLY B -18 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER B -17 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER B -16 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS B -15 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS B -14 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS B -13 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS B -12 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS B -11 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS B -10 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER B -9 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER B -8 UNP P48730 EXPRESSION TAG SEQADV 6HMP GLY B -7 UNP P48730 EXPRESSION TAG SEQADV 6HMP LEU B -6 UNP P48730 EXPRESSION TAG SEQADV 6HMP VAL B -5 UNP P48730 EXPRESSION TAG SEQADV 6HMP PRO B -4 UNP P48730 EXPRESSION TAG SEQADV 6HMP ARG B -3 UNP P48730 EXPRESSION TAG SEQADV 6HMP GLY B -2 UNP P48730 EXPRESSION TAG SEQADV 6HMP SER B -1 UNP P48730 EXPRESSION TAG SEQADV 6HMP HIS B 0 UNP P48730 EXPRESSION TAG SEQRES 1 A 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 314 LEU VAL PRO ARG GLY SER HIS MET GLU LEU ARG VAL GLY SEQRES 3 A 314 ASN ARG TYR ARG LEU GLY ARG LYS ILE GLY SER GLY SER SEQRES 4 A 314 PHE GLY ASP ILE TYR LEU GLY THR ASP ILE ALA ALA GLY SEQRES 5 A 314 GLU GLU VAL ALA ILE LYS LEU GLU CYS VAL LYS THR LYS SEQRES 6 A 314 HIS PRO GLN LEU HIS ILE GLU SER LYS ILE TYR LYS MET SEQRES 7 A 314 MET GLN GLY GLY VAL GLY ILE PRO THR ILE ARG TRP CYS SEQRES 8 A 314 GLY ALA GLU GLY ASP TYR ASN VAL MET VAL MET GLU LEU SEQRES 9 A 314 LEU GLY PRO SER LEU GLU ASP LEU PHE ASN PHE CYS SER SEQRES 10 A 314 ARG LYS PHE SER LEU LYS THR VAL LEU LEU LEU ALA ASP SEQRES 11 A 314 GLN MET ILE SER ARG ILE GLU TYR ILE HIS SER LYS ASN SEQRES 12 A 314 PHE ILE HIS ARG ASP VAL LYS PRO ASP ASN PHE LEU MET SEQRES 13 A 314 GLY LEU GLY LYS LYS GLY ASN LEU VAL TYR ILE ILE ASP SEQRES 14 A 314 PHE GLY LEU ALA LYS LYS TYR ARG ASP ALA ARG THR HIS SEQRES 15 A 314 GLN HIS ILE PRO TYR ARG GLU ASN LYS ASN LEU THR GLY SEQRES 16 A 314 THR ALA ARG TYR ALA SER ILE ASN THR HIS LEU GLY ILE SEQRES 17 A 314 GLU GLN SER ARG ARG ASP ASP LEU GLU SER LEU GLY TYR SEQRES 18 A 314 VAL LEU MET TYR PHE ASN LEU GLY SER LEU PRO TRP GLN SEQRES 19 A 314 GLY LEU LYS ALA ALA THR LYS ARG GLN LYS TYR GLU ARG SEQRES 20 A 314 ILE SER GLU LYS LYS MET SER THR PRO ILE GLU VAL LEU SEQRES 21 A 314 CYS LYS GLY TYR PRO SER GLU PHE ALA THR TYR LEU ASN SEQRES 22 A 314 PHE CYS ARG SER LEU ARG PHE ASP ASP LYS PRO ASP TYR SEQRES 23 A 314 SER TYR LEU ARG GLN LEU PHE ARG ASN LEU PHE HIS ARG SEQRES 24 A 314 GLN GLY PHE SER TYR ASP TYR VAL PHE ASP TRP ASN MET SEQRES 25 A 314 LEU LYS SEQRES 1 B 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 314 LEU VAL PRO ARG GLY SER HIS MET GLU LEU ARG VAL GLY SEQRES 3 B 314 ASN ARG TYR ARG LEU GLY ARG LYS ILE GLY SER GLY SER SEQRES 4 B 314 PHE GLY ASP ILE TYR LEU GLY THR ASP ILE ALA ALA GLY SEQRES 5 B 314 GLU GLU VAL ALA ILE LYS LEU GLU CYS VAL LYS THR LYS SEQRES 6 B 314 HIS PRO GLN LEU HIS ILE GLU SER LYS ILE TYR LYS MET SEQRES 7 B 314 MET GLN GLY GLY VAL GLY ILE PRO THR ILE ARG TRP CYS SEQRES 8 B 314 GLY ALA GLU GLY ASP TYR ASN VAL MET VAL MET GLU LEU SEQRES 9 B 314 LEU GLY PRO SER LEU GLU ASP LEU PHE ASN PHE CYS SER SEQRES 10 B 314 ARG LYS PHE SER LEU LYS THR VAL LEU LEU LEU ALA ASP SEQRES 11 B 314 GLN MET ILE SER ARG ILE GLU TYR ILE HIS SER LYS ASN SEQRES 12 B 314 PHE ILE HIS ARG ASP VAL LYS PRO ASP ASN PHE LEU MET SEQRES 13 B 314 GLY LEU GLY LYS LYS GLY ASN LEU VAL TYR ILE ILE ASP SEQRES 14 B 314 PHE GLY LEU ALA LYS LYS TYR ARG ASP ALA ARG THR HIS SEQRES 15 B 314 GLN HIS ILE PRO TYR ARG GLU ASN LYS ASN LEU THR GLY SEQRES 16 B 314 THR ALA ARG TYR ALA SER ILE ASN THR HIS LEU GLY ILE SEQRES 17 B 314 GLU GLN SER ARG ARG ASP ASP LEU GLU SER LEU GLY TYR SEQRES 18 B 314 VAL LEU MET TYR PHE ASN LEU GLY SER LEU PRO TRP GLN SEQRES 19 B 314 GLY LEU LYS ALA ALA THR LYS ARG GLN LYS TYR GLU ARG SEQRES 20 B 314 ILE SER GLU LYS LYS MET SER THR PRO ILE GLU VAL LEU SEQRES 21 B 314 CYS LYS GLY TYR PRO SER GLU PHE ALA THR TYR LEU ASN SEQRES 22 B 314 PHE CYS ARG SER LEU ARG PHE ASP ASP LYS PRO ASP TYR SEQRES 23 B 314 SER TYR LEU ARG GLN LEU PHE ARG ASN LEU PHE HIS ARG SEQRES 24 B 314 GLN GLY PHE SER TYR ASP TYR VAL PHE ASP TRP ASN MET SEQRES 25 B 314 LEU LYS HET GEW A 301 71 HET PO4 A 302 5 HET GEW B 301 71 HET PO4 B 302 5 HETNAM GEW 3-(2,5-DIMETHOXYPHENYL)-~{N}-[4-[5-(4-FLUOROPHENYL)-2- HETNAM 2 GEW [(~{E})-(4-FLUOROPHENYL)DIAZENYL]-3-METHYL-IMIDAZOL-4- HETNAM 3 GEW YL]PYRIDIN-2-YL]PROPANAMIDE HETNAM PO4 PHOSPHATE ION FORMUL 3 GEW 2(C32 H28 F2 N6 O3) FORMUL 4 PO4 2(O4 P 3-) FORMUL 7 HOH *229(H2 O) HELIX 1 AA1 GLN A 48 GLN A 60 1 13 HELIX 2 AA2 SER A 88 CYS A 96 1 9 HELIX 3 AA3 SER A 101 LYS A 122 1 22 HELIX 4 AA4 LYS A 130 ASP A 132 5 3 HELIX 5 AA5 LEU A 138 GLY A 142 5 5 HELIX 6 AA6 THR A 176 ALA A 180 5 5 HELIX 7 AA7 SER A 181 LEU A 186 1 6 HELIX 8 AA8 SER A 191 GLY A 209 1 19 HELIX 9 AA9 THR A 220 THR A 235 1 16 HELIX 10 AB1 PRO A 236 CYS A 241 1 6 HELIX 11 AB2 PRO A 245 LEU A 258 1 14 HELIX 12 AB3 ASP A 265 GLN A 280 1 16 HELIX 13 AB4 PHE A 288 LEU A 293 5 6 HELIX 14 AB5 GLN B 48 GLN B 60 1 13 HELIX 15 AB6 SER B 88 CYS B 96 1 9 HELIX 16 AB7 SER B 101 LYS B 122 1 22 HELIX 17 AB8 LYS B 130 ASP B 132 5 3 HELIX 18 AB9 LEU B 138 GLY B 142 5 5 HELIX 19 AC1 THR B 176 ALA B 180 5 5 HELIX 20 AC2 SER B 181 LEU B 186 1 6 HELIX 21 AC3 SER B 191 GLY B 209 1 19 HELIX 22 AC4 ILE B 228 SER B 234 1 7 HELIX 23 AC5 PRO B 236 CYS B 241 1 6 HELIX 24 AC6 SER B 246 LEU B 258 1 13 HELIX 25 AC7 ASP B 265 GLN B 280 1 16 HELIX 26 AC8 PHE B 288 LEU B 293 5 6 SHEET 1 AA1 5 TYR A 9 SER A 17 0 SHEET 2 AA1 5 ASP A 22 ASP A 28 -1 O THR A 27 N ARG A 10 SHEET 3 AA1 5 GLU A 34 CYS A 41 -1 O ILE A 37 N TYR A 24 SHEET 4 AA1 5 TYR A 77 GLU A 83 -1 O ASN A 78 N GLU A 40 SHEET 5 AA1 5 ILE A 68 GLU A 74 -1 N GLY A 72 O VAL A 79 SHEET 1 AA2 2 PHE A 124 ILE A 125 0 SHEET 2 AA2 2 LYS A 154 LYS A 155 -1 O LYS A 154 N ILE A 125 SHEET 1 AA3 2 PHE A 134 MET A 136 0 SHEET 2 AA3 2 VAL A 145 ILE A 147 -1 O TYR A 146 N LEU A 135 SHEET 1 AA4 6 ARG B 4 VAL B 5 0 SHEET 2 AA4 6 TYR B 9 SER B 17 -1 O TYR B 9 N VAL B 5 SHEET 3 AA4 6 ASP B 22 ASP B 28 -1 O LEU B 25 N GLY B 12 SHEET 4 AA4 6 GLU B 33 CYS B 41 -1 O GLU B 33 N ASP B 28 SHEET 5 AA4 6 TYR B 77 GLU B 83 -1 O ASN B 78 N GLU B 40 SHEET 6 AA4 6 ILE B 68 GLU B 74 -1 N GLU B 74 O TYR B 77 SHEET 1 AA5 2 PHE B 124 ILE B 125 0 SHEET 2 AA5 2 LYS B 154 LYS B 155 -1 O LYS B 154 N ILE B 125 SHEET 1 AA6 2 PHE B 134 MET B 136 0 SHEET 2 AA6 2 VAL B 145 ILE B 147 -1 O TYR B 146 N LEU B 135 SITE 1 AC1 15 ARG A 13 SER A 17 GLY A 18 ILE A 23 SITE 2 AC1 15 ALA A 36 LYS A 38 MET A 80 MET A 82 SITE 3 AC1 15 GLU A 83 LEU A 84 LEU A 85 LYS A 130 SITE 4 AC1 15 ASP A 132 ILE A 148 HOH A 460 SITE 1 AC2 6 ARG A 178 GLN A 214 GLY A 215 LYS A 224 SITE 2 AC2 6 HOH A 419 HOH A 461 SITE 1 AC3 20 ARG B 13 ILE B 15 SER B 17 GLY B 18 SITE 2 AC3 20 ILE B 23 ALA B 36 LYS B 38 MET B 80 SITE 3 AC3 20 MET B 82 LEU B 84 LEU B 85 GLY B 86 SITE 4 AC3 20 PRO B 87 LYS B 130 ASP B 132 LEU B 135 SITE 5 AC3 20 LEU B 138 ILE B 148 ASP B 149 HOH B 417 SITE 1 AC4 3 SER B 267 ARG B 270 ARG B 274 CRYST1 48.819 72.223 89.161 90.00 103.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020484 0.000000 0.004808 0.00000 SCALE2 0.000000 0.013846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011520 0.00000