HEADER CELL CYCLE 14-SEP-18 6HNG TITLE PEPTIDE-MEMBRANE INTERACTION BETWEEN TARGETING AND LYSIS CAVEAT 6HNG LYS A 1 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYS-LEU-LEU-LYS-LEU-LEU-LYS-LYS-LEU-LEU-LYS-LEU-LEU-LYS- COMPND 3 NHE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.SCHNEIDER,M.BLATTER,A.MUELLER REVDAT 4 06-NOV-24 6HNG 1 REMARK REVDAT 3 14-JUN-23 6HNG 1 REMARK REVDAT 2 08-MAY-19 6HNG 1 REMARK REVDAT 1 24-OCT-18 6HNG 0 JRNL AUTH M.BLATTER,G.SCHNEIDER JRNL TITL PEPTIDE-MEMBRANE INTERACTION BETWEEN TARGETING AND LYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 3.97 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011748. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 291 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 10 MM PEPTIDE, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 2D 1H-13C HSQC; 2D DQF REMARK 210 -COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.97, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 1830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 7 LYS A 1 N LYS A 1 CA -0.462 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 LYS A 1 N - CA - C ANGL. DEV. = 30.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 13 -33.32 -134.02 REMARK 500 3 LEU A 13 -31.21 -135.60 REMARK 500 6 LEU A 2 6.51 -67.97 REMARK 500 7 LEU A 2 -23.92 -153.04 REMARK 500 9 LEU A 2 43.69 -75.97 REMARK 500 13 LEU A 2 40.56 -74.57 REMARK 500 14 LEU A 3 -20.80 -141.63 REMARK 500 16 LEU A 2 47.19 -76.46 REMARK 500 16 LEU A 3 -16.58 -141.57 REMARK 500 18 LEU A 2 31.92 -71.90 REMARK 500 19 LEU A 3 -29.11 -154.25 REMARK 500 19 LEU A 12 -32.01 -136.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34315 RELATED DB: BMRB REMARK 900 PEPTIDE-MEMBRANE INTERACTION BETWEEN TARGETING AND LYSIS DBREF 6HNG A 1 15 PDB 6HNG 6HNG 1 15 SEQRES 1 A 15 LYS LEU LEU LYS LEU LEU LYS LYS LEU LEU LYS LEU LEU SEQRES 2 A 15 LYS NH2 HET NH2 A 15 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 AA1 LYS A 4 LYS A 11 1 8 LINK C LYS A 14 N NH2 A 15 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 287 N NH2 A 15 -3.468 11.393 -19.462 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -3.020 10.496 -19.583 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.969 12.246 -19.671 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 2 HETATM 287 N NH2 A 15 -2.808 10.983 -19.678 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.403 10.078 -19.489 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.213 11.769 -19.898 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 3 HETATM 287 N NH2 A 15 -3.308 11.311 -18.998 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.936 10.423 -19.303 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.707 12.123 -18.966 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 4 HETATM 287 N NH2 A 15 -3.335 11.604 -19.360 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.885 10.727 -19.574 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.841 12.473 -19.502 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 5 HETATM 287 N NH2 A 15 -3.268 11.500 -19.723 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.916 10.581 -19.947 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.719 12.318 -19.947 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 6 HETATM 287 N NH2 A 15 -3.246 11.362 -19.704 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.950 10.436 -19.978 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.639 12.153 -19.868 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 7 HETATM 287 N NH2 A 15 -3.312 11.422 -18.892 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.923 10.585 -19.300 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.748 12.255 -18.795 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 8 HETATM 287 N NH2 A 15 -3.276 11.588 -19.420 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.942 10.705 -19.778 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.692 12.411 -19.467 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 9 HETATM 287 N NH2 A 15 -3.053 11.540 -19.324 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.697 10.663 -19.676 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.459 12.357 -19.337 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 10 HETATM 287 N NH2 A 15 -2.971 11.533 -19.331 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.493 10.677 -19.574 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.457 12.403 -19.311 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 11 HETATM 287 N NH2 A 15 -3.260 11.611 -19.060 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.826 10.787 -19.452 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.737 12.472 -18.981 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 12 HETATM 287 N NH2 A 15 -3.062 11.443 -19.381 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.642 10.533 -19.499 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.518 12.281 -19.533 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 13 HETATM 287 N NH2 A 15 -3.066 10.564 -19.715 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.716 9.616 -19.688 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.425 11.328 -19.874 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 14 HETATM 287 N NH2 A 15 -3.058 11.256 -19.579 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.717 10.306 -19.617 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.455 12.027 -19.828 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 15 HETATM 287 N NH2 A 15 -3.280 11.428 -19.598 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.978 10.513 -19.901 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.672 12.223 -19.733 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 16 HETATM 287 N NH2 A 15 -3.267 11.487 -19.449 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.931 10.595 -19.785 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.680 12.304 -19.529 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 17 HETATM 287 N NH2 A 15 -2.952 10.636 -20.314 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.710 9.665 -20.175 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.229 11.309 -20.522 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 18 HETATM 287 N NH2 A 15 -3.237 11.728 -19.196 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.862 10.845 -19.513 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.692 12.575 -19.284 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 19 HETATM 287 N NH2 A 15 -3.281 10.401 -20.019 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.887 9.471 -20.018 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.716 11.187 -20.305 1.00 0.00 H TER 290 NH2 A 15 ENDMDL MODEL 20 HETATM 287 N NH2 A 15 -3.228 11.652 -18.869 1.00 0.00 N HETATM 288 HN1 NH2 A 15 -2.817 10.857 -19.338 1.00 0.00 H HETATM 289 HN2 NH2 A 15 -2.684 12.492 -18.736 1.00 0.00 H TER 290 NH2 A 15 ENDMDL CONECT 267 287 CONECT 287 267 288 289 CONECT 288 287 CONECT 289 287 MASTER 143 0 1 1 0 0 0 6 119 1 4 2 END