HEADER TRANSFERASE 17-SEP-18 6HNU TITLE CRYSTAL STRUCTURE OF THE AMINOTRANSFERASE ARO8 FROM C. ALBICANS WITH TITLE 2 LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC AMINO ACID AMINOTRANSFERASE I; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS WO-1; SOURCE 3 ORGANISM_TAXID: 294748; SOURCE 4 GENE: CAWG_03814; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ARO8 FROM C. ALBICANS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KILISZEK,K.RZAD,W.RYPNIEWSKI,S.MILEWSKI,I.GABRIEL REVDAT 3 24-JAN-24 6HNU 1 REMARK REVDAT 2 27-MAR-19 6HNU 1 JRNL REVDAT 1 20-FEB-19 6HNU 0 JRNL AUTH A.KILISZEK,W.RYPNIEWSKI,K.RZAD,S.MILEWSKI,I.GABRIEL JRNL TITL CRYSTAL STRUCTURES OF AMINOTRANSFERASES ARO8 AND ARO9 FROM JRNL TITL 2 CANDIDA ALBICANS AND STRUCTURAL INSIGHTS INTO THEIR JRNL TITL 3 PROPERTIES. JRNL REF J.STRUCT.BIOL. V. 205 26 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30742897 JRNL DOI 10.1016/J.JSB.2019.02.001 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 92163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 346 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 1125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7951 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7383 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10789 ; 1.586 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17210 ; 2.281 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 968 ; 6.989 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 390 ;34.244 ;23.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1349 ;14.199 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1014 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8769 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1643 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3856 ; 2.012 ; 2.353 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3854 ; 2.000 ; 2.351 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4811 ; 2.868 ; 3.511 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4812 ; 2.874 ; 3.512 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4095 ; 2.543 ; 2.612 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4096 ; 2.543 ; 2.612 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5971 ; 3.861 ; 3.809 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9629 ; 5.748 ;29.561 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9301 ; 5.567 ;28.775 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8943 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6HNB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M BIS-TRIS PH 5.5, REMARK 280 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.89250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.44150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.44150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.89250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 LEU A 450 REMARK 465 PRO A 451 REMARK 465 ALA A 452 REMARK 465 ASN A 453 REMARK 465 PRO A 454 REMARK 465 SER A 455 REMARK 465 HIS A 456 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 450 REMARK 465 PRO B 451 REMARK 465 ALA B 452 REMARK 465 ASN B 453 REMARK 465 PRO B 454 REMARK 465 SER B 455 REMARK 465 HIS B 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 29 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 54 44.98 -80.20 REMARK 500 ASN A 132 55.03 -92.73 REMARK 500 ASP A 186 -168.07 -118.75 REMARK 500 LEU A 302 -72.65 -102.15 REMARK 500 ALA A 303 142.18 -170.50 REMARK 500 SER A 328 -87.44 -113.75 REMARK 500 GLN A 330 -59.08 78.10 REMARK 500 PRO B 54 42.38 -80.32 REMARK 500 ASN B 79 32.08 -95.70 REMARK 500 ASN B 132 57.02 -96.74 REMARK 500 ASP B 186 -167.31 -115.85 REMARK 500 ASP B 260 88.07 -68.65 REMARK 500 LEU B 302 -72.29 -106.58 REMARK 500 SER B 328 -88.49 -119.23 REMARK 500 GLN B 330 -62.72 79.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1157 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B1169 DISTANCE = 6.01 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP A 502 and PHE A REMARK 800 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 502 and PHE B REMARK 800 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HNB RELATED DB: PDB DBREF 6HNU A 1 491 UNP C4YJ02 C4YJ02_CANAW 1 491 DBREF 6HNU B 1 491 UNP C4YJ02 C4YJ02_CANAW 1 491 SEQADV 6HNU LEU A 111 UNP C4YJ02 SER 111 CONFLICT SEQADV 6HNU LEU B 111 UNP C4YJ02 SER 111 CONFLICT SEQRES 1 A 491 MET THR SER ASP THR LYS PRO GLN ALA LYS ASP LEU THR SEQRES 2 A 491 HIS LEU LEU SER ASN GLU SER LYS ALA ARG GLN THR SER SEQRES 3 A 491 PRO LEU LYS GLY ILE PHE LYS TYR TYR LYS GLN PRO GLY SEQRES 4 A 491 ILE THR PHE LEU GLY GLY GLY LEU PRO LEU SER ASP TYR SEQRES 5 A 491 PHE PRO PHE GLU LYS VAL THR ALA ASP ILE PRO THR PRO SEQRES 6 A 491 SER PHE SER GLY GLY ILE GLY ALA PRO ILE GLU GLY GLU SEQRES 7 A 491 ASN LYS THR THR ILE GLU VAL PHE LYS LYS ALA ALA ASP SEQRES 8 A 491 ASN VAL PRO ASP GLN ILE GLU LEU ALA ARG SER LEU GLN SEQRES 9 A 491 TYR GLY SER THR PHE GLY LEU PRO GLU PHE LEU GLN PHE SEQRES 10 A 491 ILE LYS GLU HIS THR ASP MET VAL HIS LYS VAL PRO TYR SEQRES 11 A 491 GLU ASN TRP ASP VAL ILE VAL SER VAL GLY ASN THR GLU SEQRES 12 A 491 ALA TRP ASP SER THR LEU ARG THR PHE CYS SER LYS GLY SEQRES 13 A 491 ASP THR ILE LEU VAL GLU GLU TYR THR PHE SER SER ALA SEQRES 14 A 491 LEU GLU SER ALA ASN GLY GLN GLY VAL ASN THR VAL PRO SEQRES 15 A 491 VAL THR MET ASP GLU PHE GLY ILE ILE PRO GLU LYS LEU SEQRES 16 A 491 GLU GLU LEU MET SER ARG TRP VAL GLY ASN LYS PRO LYS SEQRES 17 A 491 PHE LEU TYR THR ILE CYS THR GLY GLN ASN PRO THR GLY SEQRES 18 A 491 SER SER LEU SER ALA GLU ARG ARG LYS GLN ILE TYR ASP SEQRES 19 A 491 ILE ALA CYS LYS TYR ASP PHE LEU ILE ILE GLU ASP GLU SEQRES 20 A 491 PRO TYR TYR PHE LEU GLN MET GLU THR TYR THR LYS ASP SEQRES 21 A 491 LYS ALA ALA ARG GLU GLY LYS ALA VAL HIS ASP HIS ASP SEQRES 22 A 491 GLU PHE LEU LYS ALA LEU VAL PRO SER PHE ILE SER LEU SEQRES 23 A 491 ASP VAL GLU GLY ARG VAL VAL ARG LEU ASP SER PHE SER SEQRES 24 A 491 LYS VAL LEU ALA PRO GLY LEU ARG LEU GLY TRP ILE VAL SEQRES 25 A 491 GLY GLN LYS ASP LEU LEU GLU ARG TYR VAL ARG LEU HIS SEQRES 26 A 491 GLU VAL SER VAL GLN ASN PRO SER GLY PHE SER GLU ALA SEQRES 27 A 491 LEU ALA ASN ALA LEU LEU ARG LYS TRP GLY HIS SER GLY SEQRES 28 A 491 TYR LEU ASP TRP LEU ILE GLY LEU ARG ALA GLU TYR THR SEQRES 29 A 491 HIS LYS ARG ASP VAL ALA ILE ASP ALA LEU ASP GLN PHE SEQRES 30 A 491 VAL PRO LYS GLU VAL SER SER PHE ASN PRO PRO VAL ALA SEQRES 31 A 491 GLY MET PHE PHE THR VAL THR LEU ASP ALA SER LYS HIS SEQRES 32 A 491 PRO LYS TYR LYS GLU PHE LEU GLU ASP PRO LEU LYS VAL SEQRES 33 A 491 GLU ALA ALA VAL HIS GLU GLN ALA ILE LYS GLN GLY CYS SEQRES 34 A 491 LEU LEU ALA PRO GLY SER TRP PHE LYS ALA GLU GLY GLN SEQRES 35 A 491 SER SER PRO PRO GLN LYS ASN LEU PRO ALA ASN PRO SER SEQRES 36 A 491 HIS LYS THR HIS ILE PHE PHE ARG GLY THR TYR ALA ALA SEQRES 37 A 491 VAL PRO LEU ASP GLN LEU VAL VAL GLY LEU GLU LYS PHE SEQRES 38 A 491 GLY LYS ALA VAL ARG ALA GLU PHE GLY LEU SEQRES 1 B 491 MET THR SER ASP THR LYS PRO GLN ALA LYS ASP LEU THR SEQRES 2 B 491 HIS LEU LEU SER ASN GLU SER LYS ALA ARG GLN THR SER SEQRES 3 B 491 PRO LEU LYS GLY ILE PHE LYS TYR TYR LYS GLN PRO GLY SEQRES 4 B 491 ILE THR PHE LEU GLY GLY GLY LEU PRO LEU SER ASP TYR SEQRES 5 B 491 PHE PRO PHE GLU LYS VAL THR ALA ASP ILE PRO THR PRO SEQRES 6 B 491 SER PHE SER GLY GLY ILE GLY ALA PRO ILE GLU GLY GLU SEQRES 7 B 491 ASN LYS THR THR ILE GLU VAL PHE LYS LYS ALA ALA ASP SEQRES 8 B 491 ASN VAL PRO ASP GLN ILE GLU LEU ALA ARG SER LEU GLN SEQRES 9 B 491 TYR GLY SER THR PHE GLY LEU PRO GLU PHE LEU GLN PHE SEQRES 10 B 491 ILE LYS GLU HIS THR ASP MET VAL HIS LYS VAL PRO TYR SEQRES 11 B 491 GLU ASN TRP ASP VAL ILE VAL SER VAL GLY ASN THR GLU SEQRES 12 B 491 ALA TRP ASP SER THR LEU ARG THR PHE CYS SER LYS GLY SEQRES 13 B 491 ASP THR ILE LEU VAL GLU GLU TYR THR PHE SER SER ALA SEQRES 14 B 491 LEU GLU SER ALA ASN GLY GLN GLY VAL ASN THR VAL PRO SEQRES 15 B 491 VAL THR MET ASP GLU PHE GLY ILE ILE PRO GLU LYS LEU SEQRES 16 B 491 GLU GLU LEU MET SER ARG TRP VAL GLY ASN LYS PRO LYS SEQRES 17 B 491 PHE LEU TYR THR ILE CYS THR GLY GLN ASN PRO THR GLY SEQRES 18 B 491 SER SER LEU SER ALA GLU ARG ARG LYS GLN ILE TYR ASP SEQRES 19 B 491 ILE ALA CYS LYS TYR ASP PHE LEU ILE ILE GLU ASP GLU SEQRES 20 B 491 PRO TYR TYR PHE LEU GLN MET GLU THR TYR THR LYS ASP SEQRES 21 B 491 LYS ALA ALA ARG GLU GLY LYS ALA VAL HIS ASP HIS ASP SEQRES 22 B 491 GLU PHE LEU LYS ALA LEU VAL PRO SER PHE ILE SER LEU SEQRES 23 B 491 ASP VAL GLU GLY ARG VAL VAL ARG LEU ASP SER PHE SER SEQRES 24 B 491 LYS VAL LEU ALA PRO GLY LEU ARG LEU GLY TRP ILE VAL SEQRES 25 B 491 GLY GLN LYS ASP LEU LEU GLU ARG TYR VAL ARG LEU HIS SEQRES 26 B 491 GLU VAL SER VAL GLN ASN PRO SER GLY PHE SER GLU ALA SEQRES 27 B 491 LEU ALA ASN ALA LEU LEU ARG LYS TRP GLY HIS SER GLY SEQRES 28 B 491 TYR LEU ASP TRP LEU ILE GLY LEU ARG ALA GLU TYR THR SEQRES 29 B 491 HIS LYS ARG ASP VAL ALA ILE ASP ALA LEU ASP GLN PHE SEQRES 30 B 491 VAL PRO LYS GLU VAL SER SER PHE ASN PRO PRO VAL ALA SEQRES 31 B 491 GLY MET PHE PHE THR VAL THR LEU ASP ALA SER LYS HIS SEQRES 32 B 491 PRO LYS TYR LYS GLU PHE LEU GLU ASP PRO LEU LYS VAL SEQRES 33 B 491 GLU ALA ALA VAL HIS GLU GLN ALA ILE LYS GLN GLY CYS SEQRES 34 B 491 LEU LEU ALA PRO GLY SER TRP PHE LYS ALA GLU GLY GLN SEQRES 35 B 491 SER SER PRO PRO GLN LYS ASN LEU PRO ALA ASN PRO SER SEQRES 36 B 491 HIS LYS THR HIS ILE PHE PHE ARG GLY THR TYR ALA ALA SEQRES 37 B 491 VAL PRO LEU ASP GLN LEU VAL VAL GLY LEU GLU LYS PHE SEQRES 38 B 491 GLY LYS ALA VAL ARG ALA GLU PHE GLY LEU HET BTB A 501 14 HET PLP A 502 15 HET PHE A 503 12 HET CL A 504 1 HET CL A 505 1 HET BTB B 501 14 HET PLP B 502 15 HET PHE B 503 12 HET TRS B 504 8 HET CL B 505 1 HET CL B 506 1 HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM PHE PHENYLALANINE HETNAM CL CHLORIDE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN BTB BIS-TRIS BUFFER HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN TRS TRIS BUFFER FORMUL 3 BTB 2(C8 H19 N O5) FORMUL 4 PLP 2(C8 H10 N O6 P) FORMUL 5 PHE 2(C9 H11 N O2) FORMUL 6 CL 4(CL 1-) FORMUL 11 TRS C4 H12 N O3 1+ FORMUL 14 HOH *1125(H2 O) HELIX 1 AA1 LEU A 12 LEU A 16 5 5 HELIX 2 AA2 SER A 17 ALA A 22 1 6 HELIX 3 AA3 SER A 26 TYR A 35 5 10 HELIX 4 AA4 LEU A 49 PHE A 53 5 5 HELIX 5 AA5 GLU A 76 LYS A 80 5 5 HELIX 6 AA6 LYS A 88 ASN A 92 5 5 HELIX 7 AA7 GLU A 98 LEU A 103 1 6 HELIX 8 AA8 LEU A 111 LYS A 127 1 17 HELIX 9 AA9 GLY A 140 CYS A 153 1 14 HELIX 10 AB1 PHE A 166 GLN A 176 1 11 HELIX 11 AB2 ILE A 191 ARG A 201 1 11 HELIX 12 AB3 SER A 225 ASP A 240 1 16 HELIX 13 AB4 TYR A 249 GLN A 253 5 5 HELIX 14 AB5 ASP A 260 ALA A 262 5 3 HELIX 15 AB6 ALA A 263 ALA A 268 1 6 HELIX 16 AB7 ASP A 271 LEU A 279 1 9 HELIX 17 AB8 SER A 282 ASP A 287 1 6 HELIX 18 AB9 ALA A 303 ARG A 307 5 5 HELIX 19 AC1 LYS A 315 SER A 328 1 14 HELIX 20 AC2 SER A 333 VAL A 378 1 46 HELIX 21 AC3 SER A 401 HIS A 403 5 3 HELIX 22 AC4 ASP A 412 GLY A 428 1 17 HELIX 23 AC5 SER A 435 LYS A 438 5 4 HELIX 24 AC6 PRO A 470 GLY A 490 1 21 HELIX 25 AC7 LEU B 12 LEU B 16 5 5 HELIX 26 AC8 SER B 17 ARG B 23 1 7 HELIX 27 AC9 SER B 26 TYR B 35 5 10 HELIX 28 AD1 LEU B 49 PHE B 53 5 5 HELIX 29 AD2 GLU B 76 LYS B 80 5 5 HELIX 30 AD3 LYS B 88 ASN B 92 5 5 HELIX 31 AD4 GLU B 98 LEU B 103 1 6 HELIX 32 AD5 LEU B 111 LYS B 127 1 17 HELIX 33 AD6 GLY B 140 CYS B 153 1 14 HELIX 34 AD7 PHE B 166 GLN B 176 1 11 HELIX 35 AD8 ILE B 191 ARG B 201 1 11 HELIX 36 AD9 SER B 225 ASP B 240 1 16 HELIX 37 AE1 TYR B 249 GLN B 253 5 5 HELIX 38 AE2 ASP B 260 ALA B 262 5 3 HELIX 39 AE3 ALA B 263 ALA B 268 1 6 HELIX 40 AE4 ASP B 271 LEU B 279 1 9 HELIX 41 AE5 SER B 282 ASP B 287 1 6 HELIX 42 AE6 ALA B 303 ARG B 307 5 5 HELIX 43 AE7 LYS B 315 SER B 328 1 14 HELIX 44 AE8 SER B 333 VAL B 378 1 46 HELIX 45 AE9 PRO B 379 GLU B 381 5 3 HELIX 46 AF1 SER B 401 HIS B 403 5 3 HELIX 47 AF2 ASP B 412 GLN B 427 1 16 HELIX 48 AF3 SER B 435 LYS B 438 5 4 HELIX 49 AF4 PRO B 470 GLY B 490 1 21 SHEET 1 AA1 2 THR A 41 PHE A 42 0 SHEET 2 AA1 2 CYS B 429 LEU B 430 1 O LEU B 430 N THR A 41 SHEET 1 AA2 4 THR A 81 PHE A 86 0 SHEET 2 AA2 4 LYS A 57 ILE A 62 -1 N VAL A 58 O VAL A 85 SHEET 3 AA2 4 LYS B 57 ILE B 62 -1 O THR B 59 N THR A 59 SHEET 4 AA2 4 THR B 81 PHE B 86 -1 O VAL B 85 N VAL B 58 SHEET 1 AA3 7 TRP A 133 SER A 138 0 SHEET 2 AA3 7 GLY A 309 GLN A 314 -1 O GLY A 313 N ASP A 134 SHEET 3 AA3 7 VAL A 292 SER A 297 -1 N ASP A 296 O TRP A 310 SHEET 4 AA3 7 LEU A 242 ASP A 246 1 N ILE A 243 O VAL A 293 SHEET 5 AA3 7 PHE A 209 THR A 212 1 N LEU A 210 O ILE A 244 SHEET 6 AA3 7 THR A 158 GLU A 162 1 N LEU A 160 O PHE A 209 SHEET 7 AA3 7 ASN A 179 VAL A 183 1 O ASN A 179 N ILE A 159 SHEET 1 AA4 2 MET A 185 ASP A 186 0 SHEET 2 AA4 2 GLY A 189 ILE A 190 -1 O GLY A 189 N ASP A 186 SHEET 1 AA5 4 SER A 383 SER A 384 0 SHEET 2 AA5 4 PHE A 393 ASP A 399 -1 O THR A 397 N SER A 384 SHEET 3 AA5 4 HIS A 459 THR A 465 -1 O GLY A 464 N PHE A 394 SHEET 4 AA5 4 ALA A 432 PRO A 433 -1 N ALA A 432 O ARG A 463 SHEET 1 AA6 2 CYS A 429 LEU A 430 0 SHEET 2 AA6 2 THR B 41 PHE B 42 1 O THR B 41 N LEU A 430 SHEET 1 AA7 7 TRP B 133 SER B 138 0 SHEET 2 AA7 7 GLY B 309 GLN B 314 -1 O ILE B 311 N ILE B 136 SHEET 3 AA7 7 VAL B 292 SER B 297 -1 N ASP B 296 O TRP B 310 SHEET 4 AA7 7 LEU B 242 ASP B 246 1 N GLU B 245 O LEU B 295 SHEET 5 AA7 7 PHE B 209 THR B 212 1 N LEU B 210 O ILE B 244 SHEET 6 AA7 7 THR B 158 GLU B 162 1 N LEU B 160 O PHE B 209 SHEET 7 AA7 7 ASN B 179 VAL B 183 1 O ASN B 179 N ILE B 159 SHEET 1 AA8 2 MET B 185 ASP B 186 0 SHEET 2 AA8 2 GLY B 189 ILE B 190 -1 O GLY B 189 N ASP B 186 SHEET 1 AA9 4 SER B 383 SER B 384 0 SHEET 2 AA9 4 PHE B 393 ASP B 399 -1 O THR B 397 N SER B 384 SHEET 3 AA9 4 HIS B 459 THR B 465 -1 O GLY B 464 N PHE B 394 SHEET 4 AA9 4 ALA B 432 PRO B 433 -1 N ALA B 432 O ARG B 463 LINK C4A PLP A 502 N PHE A 503 1555 1555 1.43 LINK C4A PLP B 502 N PHE B 503 1555 1555 1.41 CISPEP 1 PRO A 65 SER A 66 0 11.05 CISPEP 2 ASN A 218 PRO A 219 0 8.83 CISPEP 3 SER A 444 PRO A 445 0 -1.72 CISPEP 4 PRO B 65 SER B 66 0 12.70 CISPEP 5 ASN B 218 PRO B 219 0 11.10 CISPEP 6 SER B 444 PRO B 445 0 -1.13 SITE 1 AC1 13 TYR A 164 ASP A 186 GLU A 187 THR A 220 SITE 2 AC1 13 THR A 395 THR A 397 LYS A 457 PHE A 461 SITE 3 AC1 13 HOH A 650 HOH A 657 HOH A 695 HOH A 761 SITE 4 AC1 13 HOH A 869 SITE 1 AC2 3 SER A 222 SER A 223 ASN A 386 SITE 1 AC3 2 TYR A 164 HOH A1041 SITE 1 AC4 15 TYR B 164 MET B 185 ASP B 186 GLU B 187 SITE 2 AC4 15 THR B 220 THR B 395 THR B 397 LYS B 457 SITE 3 AC4 15 PHE B 461 HOH B 626 HOH B 669 HOH B 723 SITE 4 AC4 15 HOH B 754 HOH B 801 HOH B 803 SITE 1 AC5 7 LYS A 415 GLN B 116 GLU B 120 ARG B 345 SITE 2 AC5 7 HOH B 620 HOH B 978 HOH B 990 SITE 1 AC6 3 SER B 222 SER B 223 ASN B 386 SITE 1 AC7 3 TYR B 164 HOH B1058 HOH B1064 SITE 1 AC8 14 GLY A 140 ASN A 141 THR A 142 PHE A 166 SITE 2 AC8 14 ILE A 213 ASN A 218 ASP A 246 TYR A 249 SITE 3 AC8 14 SER A 297 SER A 299 LYS A 300 ARG A 307 SITE 4 AC8 14 TYR B 105 HOH B 809 SITE 1 AC9 19 LEU A 47 TYR A 105 GLN A 330 HOH A 675 SITE 2 AC9 19 GLY B 140 ASN B 141 THR B 142 PHE B 166 SITE 3 AC9 19 TYR B 211 ILE B 213 ASN B 218 ASP B 246 SITE 4 AC9 19 TYR B 249 SER B 297 SER B 299 LYS B 300 SITE 5 AC9 19 ARG B 307 HOH B 850 HOH B 964 CRYST1 69.785 102.090 146.883 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014330 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006808 0.00000