HEADER HYDROLASE 20-SEP-18 6HPD TITLE THE STRUCTURE OF A BETA-GLUCURONIDASE FROM GLYCOSIDE HYDROLASE FAMILY TITLE 2 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE (GH2); COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FORMOSA AGARIPHILA KMM 3901; SOURCE 3 ORGANISM_TAXID: 1347342; SOURCE 4 GENE: BN863_22060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GH2, GLYCOSIDE HYDROLASE, GLUCURONIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.ROBB,N.GERLACH,L.REISKY,U.BORNSHOERU,J.H.HEHEMANN REVDAT 3 24-JAN-24 6HPD 1 REMARK REVDAT 2 31-JUL-19 6HPD 1 JRNL REVDAT 1 24-JUL-19 6HPD 0 JRNL AUTH L.REISKY,A.PRECHOUX,M.K.ZUHLKE,M.BAUMGEN,C.S.ROBB,N.GERLACH, JRNL AUTH 2 T.RORET,C.STANETTY,R.LAROCQUE,G.MICHEL,T.SONG,S.MARKERT, JRNL AUTH 3 F.UNFRIED,M.D.MIHOVILOVIC,A.TRAUTWEIN-SCHULT,D.BECHER, JRNL AUTH 4 T.SCHWEDER,U.T.BORNSCHEUER,J.H.HEHEMANN JRNL TITL A MARINE BACTERIAL ENZYMATIC CASCADE DEGRADES THE ALGAL JRNL TITL 2 POLYSACCHARIDE ULVAN. JRNL REF NAT.CHEM.BIOL. V. 15 803 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 31285597 JRNL DOI 10.1038/S41589-019-0311-9 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2654 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7575 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.56000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.597 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7787 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7048 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10596 ; 1.162 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16206 ; 3.632 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 953 ; 6.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 385 ;36.440 ;24.390 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1223 ;15.080 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.741 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1118 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8971 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1881 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3818 ; 1.288 ; 2.587 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3817 ; 1.288 ; 2.586 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4769 ; 2.172 ; 3.874 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4770 ; 2.171 ; 3.875 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3969 ; 1.454 ; 2.592 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3969 ; 1.454 ; 2.592 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5826 ; 2.321 ; 3.856 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9190 ; 3.963 ;20.296 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9005 ; 3.758 ;20.180 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37999 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 96.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.16100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DMY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM BROMIDE, 0.1M BIS-TRIS PH REMARK 280 7.5, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.96450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.96450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 TYR A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 CYS A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 ILE A 12 REMARK 465 LEU A 13 REMARK 465 CYS A 14 REMARK 465 SER A 15 REMARK 465 CYS A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 GLN A 21 REMARK 465 GLN A 22 REMARK 465 GLN A 23 REMARK 465 GLN A 24 REMARK 465 GLN A 25 REMARK 465 ASP A 26 REMARK 465 THR A 27 REMARK 465 TYR A 840 REMARK 465 ILE A 841 REMARK 465 PRO A 842 REMARK 465 GLY A 843 REMARK 465 VAL A 844 REMARK 465 LYS A 845 REMARK 465 ASN A 846 REMARK 465 ARG A 847 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 LYS A 52 CE NZ REMARK 470 LYS A 105 CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLU A 157 OE1 OE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLN A 277 CG CD OE1 NE2 REMARK 470 SER A 310 OG REMARK 470 ASN A 311 CG OD1 ND2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 462 CE NZ REMARK 470 GLU A 497 CG CD OE1 OE2 REMARK 470 GLU A 625 OE1 OE2 REMARK 470 LYS A 648 CE NZ REMARK 470 GLU A 695 OE1 OE2 REMARK 470 LYS A 796 CD CE NZ REMARK 470 GLU A 836 CG CD OE1 OE2 REMARK 470 GLU A 839 CG CD OE1 OE2 REMARK 470 GLU A 849 CG CD OE1 OE2 REMARK 470 ARG A 852 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 861 CD CE NZ REMARK 470 LYS A 873 CG CD CE NZ REMARK 470 ARG A 887 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 932 CG CD OE1 OE2 REMARK 470 ARG A 936 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 974 CG OD1 OD2 REMARK 470 GLU A 977 CG CD OE1 OE2 REMARK 470 ASN A 978 CG OD1 ND2 REMARK 470 LYS A 987 CD CE NZ REMARK 470 LYS A 990 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 81.28 73.37 REMARK 500 SER A 121 147.56 -174.11 REMARK 500 ASN A 176 69.84 -150.08 REMARK 500 PRO A 210 44.62 -80.41 REMARK 500 TYR A 297 71.86 -158.86 REMARK 500 SER A 310 85.61 55.13 REMARK 500 ASN A 311 -4.98 67.59 REMARK 500 ASN A 379 19.53 -140.28 REMARK 500 GLU A 411 73.98 -161.82 REMARK 500 SER A 412 147.77 -173.88 REMARK 500 ASP A 465 54.84 -142.34 REMARK 500 GLU A 509 95.14 -165.27 REMARK 500 ASN A 511 92.49 67.91 REMARK 500 PHE A 529 -68.77 -144.67 REMARK 500 MET A 559 -46.41 -133.41 REMARK 500 ILE A 572 119.18 75.15 REMARK 500 PRO A 577 36.85 -86.23 REMARK 500 PRO A 583 5.01 -69.10 REMARK 500 ALA A 589 42.91 -84.67 REMARK 500 ASN A 623 78.86 -116.67 REMARK 500 ALA A 697 -25.44 -142.80 REMARK 500 ASN A 762 -41.31 65.89 REMARK 500 LEU A 764 36.81 -81.23 REMARK 500 ASN A 867 70.11 60.63 REMARK 500 THR A 883 -98.60 -114.69 REMARK 500 ASP A 908 56.47 -107.89 REMARK 500 ALA A 968 -153.14 -112.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 570 OD1 REMARK 620 2 TRP A 571 O 84.2 REMARK 620 3 ILE A 572 O 102.8 75.4 REMARK 620 4 SER A 590 O 163.6 100.4 93.6 REMARK 620 5 GLU A 592 OE1 88.2 163.7 120.5 83.2 REMARK 620 6 GLU A 592 OE2 75.2 141.5 77.9 108.5 48.4 REMARK 620 7 HOH A1403 O 86.6 83.4 155.7 78.5 81.7 126.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 DBREF 6HPD A 11 990 UNP T2KN75 T2KN75_9FLAO 2 981 SEQADV 6HPD MET A 1 UNP T2KN75 INITIATING METHIONINE SEQADV 6HPD LYS A 2 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD ASN A 3 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD TYR A 4 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD ILE A 5 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD ALA A 6 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD LEU A 7 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD CYS A 8 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD LEU A 9 UNP T2KN75 EXPRESSION TAG SEQADV 6HPD LEU A 10 UNP T2KN75 EXPRESSION TAG SEQRES 1 A 990 MET LYS ASN TYR ILE ALA LEU CYS LEU LEU THR ILE LEU SEQRES 2 A 990 CYS SER CYS ALA GLN GLN GLN GLN GLN GLN GLN GLN ASP SEQRES 3 A 990 THR GLU VAL ILE THR SER SER GLU ARG THR THR TYR ASN SEQRES 4 A 990 PHE ASN VAL ASP TRP LYS PHE ILE LYS SER ASN PRO LYS SEQRES 5 A 990 GLN ALA GLN ASP ILE ASN TYR ASN ASP ALA THR TRP GLU SEQRES 6 A 990 THR ILE SER CYS PRO HIS THR PHE ASN ASP VAL ASP THR SEQRES 7 A 990 PHE ASP ASP LEU SER HIS GLY HIS HIS ASP GLY GLU ASP SEQRES 8 A 990 ASN GLN TRP ARG GLY THR VAL TRP TYR ARG LYS HIS PHE SEQRES 9 A 990 LYS LEU PRO LYS ASP ASP LYS GLY LYS LYS VAL PHE ILE SEQRES 10 A 990 GLU PHE GLU SER VAL ARG GLN ILE ALA ASP VAL TYR ILE SEQRES 11 A 990 ASN GLY VAL HIS LEU GLY GLN ASN GLN THR GLY PHE ILE SEQRES 12 A 990 PRO PHE GLY PHE ASP LEU THR PRO HIS LEU LYS PHE GLY SEQRES 13 A 990 GLU GLU ASN ILE ILE ALA VAL LYS VAL ASN ASN ASP ARG SEQRES 14 A 990 GLY ASP HIS PHE ARG GLU ASN PHE PRO LEU VAL TRP ASN SEQRES 15 A 990 HIS GLU HIS TRP HIS PRO THR HIS GLY GLY ILE TYR ARG SEQRES 16 A 990 ASN VAL PHE LEU HIS THR MET ASP PRO LEU HIS ILE THR SEQRES 17 A 990 LEU PRO LEU TYR ASP ASN LEU GLU THR VAL GLY THR TYR SEQRES 18 A 990 VAL TYR ALA GLU ASN ILE SER GLU LYS SER ALA ASP ILE SEQRES 19 A 990 THR VAL GLU THR GLU ILE GLN ASN GLU HIS ALA GLU ASN SEQRES 20 A 990 LYS ASN ILE THR LEU VAL THR GLN ILE VAL ASP ASN ASP SEQRES 21 A 990 GLY ALA VAL VAL ALA HIS SER ASN LYS ASN VAL ALA ILE SEQRES 22 A 990 PRO SER GLY GLN LYS MET LYS VAL THR THR VAL THR ASN SEQRES 23 A 990 ILE GLN ASN PRO GLN LEU TRP TYR THR ARG TYR PRO TYR SEQRES 24 A 990 MET TYR LYS VAL VAL SER ALA ILE LYS GLU SER ASN LYS SEQRES 25 A 990 VAL ILE ASP THR TYR GLU SER PRO LEU GLY ILE ARG ASN SEQRES 26 A 990 PHE ASP PHE ASN LYS ASP SER GLY PHE TRP ILE ASN GLY SEQRES 27 A 990 GLU GLN ILE LYS LEU HIS GLY TRP GLY GLN LYS PRO THR SEQRES 28 A 990 ASN ALA TRP ALA GLY LEU GLY ALA ALA LEU PRO ASP TRP SEQRES 29 A 990 LEU ARG ASP PHE THR PHE LYS LEU MET ASP GLU ALA GLY SEQRES 30 A 990 GLY ASN PHE ILE ARG TRP GLY HIS CYS ALA ALA SER PRO SEQRES 31 A 990 ALA GLU VAL ASP MET GLY ASP LYS TYR GLY PHE VAL THR SEQRES 32 A 990 LEU MET PRO GLY VAL SER GLY GLU SER GLU ASP GLU GLY SEQRES 33 A 990 GLU THR TRP ASP ILE ARG TYR LYS ALA PHE LYS ASP LEU SEQRES 34 A 990 ILE VAL TYR TYR ARG ASN HIS PRO SER ILE PHE ILE TRP SEQRES 35 A 990 GLU GLY GLY ASN TRP ALA GLU SER GLU ALA HIS TYR LYS SEQRES 36 A 990 GLU ILE LEU GLU ALA ILE LYS THR PHE ASP PRO LYS GLY SEQRES 37 A 990 LYS ARG LEU MET GLY ASN ARG ARG ALA ASP VAL LYS ASN SEQRES 38 A 990 ASP SER GLU GLY TYR VAL SER ILE GLU ILE GLY THR GLU SEQRES 39 A 990 GLY TRP GLU ARG GLU TYR PRO ASP LEU PRO ILE ILE GLU SEQRES 40 A 990 SER GLU TYR ASN ARG GLU GLU ALA PRO ARG ARG ILE TRP SEQRES 41 A 990 ASP LYS ASN SER PRO ASP ASP ASN PHE TYR ASN HIS PRO SEQRES 42 A 990 ASN ILE SER LYS ASN THR TYR LYS LEU SER SER GLU GLU SEQRES 43 A 990 PHE ALA VAL ARG GLN ALA ASP HIS TRP TRP ASN LYS MET SEQRES 44 A 990 GLY LYS LYS ALA TYR HIS SER GLY GLY ALA ASN TRP ILE SEQRES 45 A 990 PHE SER ASP GLY PRO HIS GLY GLY ARG CYS PRO THR GLU SEQRES 46 A 990 VAL THR ARG ALA SER GLY GLU VAL ASP ALA VAL ARG LEU SEQRES 47 A 990 PRO LYS GLU ALA PHE TYR ALA LEU LYS ALA MET TRP ARG SEQRES 48 A 990 PRO GLU PRO GLN VAL HIS ILE VAL GLY HIS TRP ASN TYR SEQRES 49 A 990 GLU VAL GLY THR LYS LYS THR MET TYR VAL MET SER ASN SEQRES 50 A 990 CYS ALA SER VAL LYS LEU TYR VAL ASN ASP LYS LEU VAL SEQRES 51 A 990 GLY THR ASN SER ASN PRO GLU ASN GLY TYR VAL PHE LYS SEQRES 52 A 990 PHE ASP ASN VAL ALA TRP GLU SER GLY LYS ILE LYS ALA SEQRES 53 A 990 GLU GLY PHE ILE ASP ASP ALA LEU LYS THR THR GLN THR SEQRES 54 A 990 LYS GLU THR THR GLY GLU PRO ALA ALA LEU LYS LEU THR SEQRES 55 A 990 SER ILE THR GLY PRO GLU GLY TRP LEU ALA ASP GLY SER SEQRES 56 A 990 ASP VAL ALA LEU ILE ASP VAL GLU VAL VAL ASP ALA GLN SEQRES 57 A 990 GLY ARG ARG CYS PRO LEU ALA LYS GLY ARG VAL ASP PHE SEQRES 58 A 990 THR ILE SER GLY PRO ALA ILE TRP ARG GLY GLY TYR ASN SEQRES 59 A 990 SER GLY LYS PRO ASN SER THR ASN ASN LEU PHE LEU ASP SEQRES 60 A 990 ILE GLU ALA GLY ILE ASN ARG VAL ALA VAL ARG SER VAL SEQRES 61 A 990 LEU GLU SER GLY THR VAL THR ILE MET ALA LYS LYS PRO SEQRES 62 A 990 GLY PHE LYS ASP VAL SER VAL THR LEU LYS SER LEU PRO SEQRES 63 A 990 ILE ASP PHE ASN ASN GLY LEU THR THR THR LEU PRO GLN SEQRES 64 A 990 VAL TYR THR ASN VAL LEU THR LYS GLU PRO LEU PRO GLU SEQRES 65 A 990 HIS ILE PRO GLU MET PRO GLU TYR ILE PRO GLY VAL LYS SEQRES 66 A 990 ASN ARG SER GLU LEU PHE ARG LYS PHE SER TYR THR GLY SEQRES 67 A 990 ASP GLY LYS ALA MET LEU ARG THR ASN MET HIS TRP GLY SEQRES 68 A 990 LYS LYS ALA TYR THR ASP LEU GLU TYR ASN TYR THR VAL SEQRES 69 A 990 LEU PRO ARG TYR LEU ASN GLU SER GLU TYR VAL ARG THR SEQRES 70 A 990 PRO ASN SER ASP ASN ARG TYR TRP ALA ARG ASP GLN LEU SEQRES 71 A 990 GLN PHE ILE ALA GLY LYS LYS MET HIS ILE TYR VAL LEU SEQRES 72 A 990 HIS ASP ASP THR VAL PRO ARG PRO GLU PHE LEU LEU ARG SEQRES 73 A 990 ASP TYR GLU ASP THR GLY ASP ASN VAL ASN VAL VAL GLY SEQRES 74 A 990 ALA SER MET SER VAL PHE HIS ARG VAL ALA GLU GLU GLY SEQRES 75 A 990 GLU SER ILE ILE MET ALA GLY ASN SER ASP GLY ASP ALA SEQRES 76 A 990 PRO GLU ASN CYS ARG MET TYR THR VAL MET VAL LYS GLU SEQRES 77 A 990 PHE LYS HET BR A1001 1 HET MG A1002 1 HETNAM BR BROMIDE ION HETNAM MG MAGNESIUM ION FORMUL 2 BR BR 1- FORMUL 3 MG MG 2+ FORMUL 4 HOH *489(H2 O) HELIX 1 AA1 PRO A 107 LYS A 113 5 7 HELIX 2 AA2 THR A 150 LEU A 153 5 4 HELIX 3 AA3 LEU A 211 GLU A 216 1 6 HELIX 4 AA4 PRO A 362 ALA A 376 1 15 HELIX 5 AA5 SER A 389 GLY A 400 1 12 HELIX 6 AA6 GLU A 415 ARG A 434 1 20 HELIX 7 AA7 SER A 450 ASP A 465 1 16 HELIX 8 AA8 ARG A 476 GLU A 484 5 9 HELIX 9 AA9 ASN A 534 ASN A 538 5 5 HELIX 10 AB1 SER A 543 MET A 559 1 17 HELIX 11 AB2 LYS A 600 ARG A 611 1 12 HELIX 12 AB3 PRO A 656 GLY A 659 5 4 HELIX 13 AB4 PRO A 886 ASN A 890 5 5 HELIX 14 AB5 PRO A 898 ASN A 902 5 5 HELIX 15 AB6 PRO A 931 TYR A 938 1 8 SHEET 1 AA1 4 THR A 36 ASN A 39 0 SHEET 2 AA1 4 VAL A 197 MET A 202 -1 O LEU A 199 N TYR A 38 SHEET 3 AA1 4 LYS A 114 PHE A 119 -1 N PHE A 116 O HIS A 200 SHEET 4 AA1 4 PHE A 145 ASP A 148 -1 O PHE A 145 N PHE A 119 SHEET 1 AA2 6 GLU A 65 ILE A 67 0 SHEET 2 AA2 6 TRP A 44 ILE A 47 -1 N PHE A 46 O GLU A 65 SHEET 3 AA2 6 THR A 97 PHE A 104 -1 O ARG A 101 N LYS A 45 SHEET 4 AA2 6 ASN A 159 ASN A 166 -1 O ASN A 159 N PHE A 104 SHEET 5 AA2 6 ILE A 125 ILE A 130 -1 N TYR A 129 O ALA A 162 SHEET 6 AA2 6 VAL A 133 ASN A 138 -1 O LEU A 135 N VAL A 128 SHEET 1 AA3 3 LEU A 205 ILE A 207 0 SHEET 2 AA3 3 SER A 231 ASN A 242 -1 O GLN A 241 N HIS A 206 SHEET 3 AA3 3 THR A 220 GLU A 225 -1 N GLU A 225 O ASP A 233 SHEET 1 AA4 3 LEU A 205 ILE A 207 0 SHEET 2 AA4 3 SER A 231 ASN A 242 -1 O GLN A 241 N HIS A 206 SHEET 3 AA4 3 LYS A 278 GLN A 288 -1 O THR A 285 N ILE A 234 SHEET 1 AA5 4 VAL A 263 ILE A 273 0 SHEET 2 AA5 4 LYS A 248 VAL A 257 -1 N LYS A 248 O ILE A 273 SHEET 3 AA5 4 TYR A 301 LYS A 308 -1 O LYS A 302 N VAL A 257 SHEET 4 AA5 4 VAL A 313 LEU A 321 -1 O ILE A 314 N ILE A 307 SHEET 1 AA6 3 PHE A 326 ASN A 329 0 SHEET 2 AA6 3 GLY A 333 ILE A 336 -1 O GLY A 333 N ASN A 329 SHEET 3 AA6 3 GLU A 339 GLN A 340 -1 O GLU A 339 N ILE A 336 SHEET 1 AA7 8 LEU A 471 ASN A 474 0 SHEET 2 AA7 8 ILE A 439 GLY A 445 1 N GLY A 444 O GLY A 473 SHEET 3 AA7 8 VAL A 402 MET A 405 1 N MET A 405 O ILE A 441 SHEET 4 AA7 8 PHE A 380 TRP A 383 1 N ILE A 381 O LEU A 404 SHEET 5 AA7 8 LEU A 343 GLN A 348 1 N GLN A 348 O ARG A 382 SHEET 6 AA7 8 GLY A 567 TRP A 571 1 O ASN A 570 N GLY A 345 SHEET 7 AA7 8 ILE A 505 TYR A 510 1 N GLU A 507 O GLY A 567 SHEET 8 AA7 8 GLU A 490 GLY A 492 1 N GLY A 492 O ILE A 506 SHEET 1 AA8 3 VAL A 616 ILE A 618 0 SHEET 2 AA8 3 LYS A 629 SER A 636 -1 O MET A 635 N HIS A 617 SHEET 3 AA8 3 VAL A 661 ALA A 668 -1 O PHE A 662 N VAL A 634 SHEET 1 AA9 4 LYS A 648 ASN A 653 0 SHEET 2 AA9 4 SER A 640 VAL A 645 -1 N LEU A 643 O VAL A 650 SHEET 3 AA9 4 LYS A 673 ILE A 680 -1 O LYS A 675 N TYR A 644 SHEET 4 AA9 4 ALA A 683 GLU A 691 -1 O THR A 686 N GLY A 678 SHEET 1 AB1 4 PRO A 696 ILE A 704 0 SHEET 2 AB1 4 VAL A 717 ASP A 726 -1 O ASP A 721 N THR A 702 SHEET 3 AB1 4 ILE A 772 SER A 779 -1 O ASN A 773 N VAL A 722 SHEET 4 AB1 4 ALA A 747 TRP A 749 -1 N ILE A 748 O ARG A 778 SHEET 1 AB2 5 TRP A 710 LEU A 711 0 SHEET 2 AB2 5 VAL A 798 LEU A 805 1 O LEU A 805 N TRP A 710 SHEET 3 AB2 5 GLY A 784 LYS A 791 -1 N VAL A 786 O LEU A 802 SHEET 4 AB2 5 GLY A 737 SER A 744 -1 N THR A 742 O MET A 789 SHEET 5 AB2 5 PHE A 765 ILE A 768 -1 O LEU A 766 N VAL A 739 SHEET 1 AB3 3 PHE A 851 TYR A 856 0 SHEET 2 AB3 3 LEU A 910 ALA A 914 -1 O ILE A 913 N ARG A 852 SHEET 3 AB3 3 SER A 964 MET A 967 -1 O MET A 967 N LEU A 910 SHEET 1 AB4 6 MET A 863 ARG A 865 0 SHEET 2 AB4 6 GLU A 893 ARG A 896 -1 O ARG A 896 N MET A 863 SHEET 3 AB4 6 THR A 983 GLU A 988 -1 O VAL A 986 N GLU A 893 SHEET 4 AB4 6 MET A 918 ASP A 925 -1 N HIS A 919 O LYS A 987 SHEET 5 AB4 6 ALA A 950 ALA A 959 -1 O ARG A 957 N ILE A 920 SHEET 6 AB4 6 GLU A 939 VAL A 947 -1 N GLU A 939 O HIS A 956 LINK OD1 ASN A 570 MG MG A1002 1555 1555 2.34 LINK O TRP A 571 MG MG A1002 1555 1555 2.33 LINK O ILE A 572 MG MG A1002 1555 1555 2.36 LINK O SER A 590 MG MG A1002 1555 1555 2.32 LINK OE1 GLU A 592 MG MG A1002 1555 1555 2.55 LINK OE2 GLU A 592 MG MG A1002 1555 1555 2.81 LINK MG MG A1002 O HOH A1403 1555 1555 2.36 CISPEP 1 CYS A 69 PRO A 70 0 -8.88 CISPEP 2 ARG A 123 GLN A 124 0 1.17 CISPEP 3 PHE A 177 PRO A 178 0 0.07 CISPEP 4 ASP A 213 ASN A 214 0 -0.72 CISPEP 5 GLY A 384 HIS A 385 0 10.67 SITE 1 AC1 3 PRO A 188 THR A 351 ALA A 353 SITE 1 AC2 6 ASN A 570 TRP A 571 ILE A 572 SER A 590 SITE 2 AC2 6 GLU A 592 HOH A1403 CRYST1 157.929 67.170 96.720 90.00 95.93 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006332 0.000000 0.000658 0.00000 SCALE2 0.000000 0.014888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010395 0.00000