HEADER PENICILLIN-BINDING PROTEIN 26-SEP-18 6HR6 TITLE NITROCEFIN REACTED WITH CATALYTIC SERINE (SER294) OF PENICILLIN- TITLE 2 BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 3,PBP-3; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: FTSI, PBPB, PA4418; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PENICILLIN-BINDING PROTEIN PEPTIDOGLYCAN, PENICILLIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,C.G.DOWSON REVDAT 4 24-JAN-24 6HR6 1 REMARK REVDAT 3 20-JUL-22 6HR6 1 TITLE CAVEAT COMPND SOURCE REVDAT 3 2 1 REMARK HETSYN FORMUL LINK REVDAT 3 3 1 ATOM REVDAT 2 25-AUG-21 6HR6 1 CAVEAT COMPND REMARK DBREF REVDAT 2 2 1 SEQADV HELIX SHEET LINK REVDAT 2 3 1 SITE SCALE ATOM REVDAT 1 23-OCT-19 6HR6 0 JRNL AUTH D.BELLINI,C.G.DOWSON JRNL TITL NITROCEFIN ACYLATION OF SINGLE CATALYTIC SERINE OF JRNL TITL 2 PENICILLIN-BINDING PROTEIN 3 FROM P. AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 17239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5400 - 4.6000 0.99 2911 155 0.1763 0.2084 REMARK 3 2 4.6000 - 3.6500 1.00 2810 134 0.1936 0.2400 REMARK 3 3 3.6500 - 3.1900 0.99 2738 152 0.2400 0.3578 REMARK 3 4 3.1900 - 2.9000 0.98 2742 114 0.2961 0.4043 REMARK 3 5 2.9000 - 2.6900 0.97 2633 138 0.3284 0.3927 REMARK 3 6 2.6900 - 2.5300 0.93 2591 121 0.3587 0.4404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 53.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3OC2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.1M BIS-TRIS PROPANE, 1%(W/V) PROTAMINE SULPHATE, PH 7.8., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.34000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.55100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.63600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.55100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.63600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 TYR A 46 REMARK 465 GLN A 47 REMARK 465 ASP A 48 REMARK 465 PRO A 49 REMARK 465 LYS A 490 REMARK 465 VAL A 491 REMARK 465 SER A 492 REMARK 465 VAL A 493 REMARK 465 GLY A 494 REMARK 465 THR A 495 REMARK 465 LYS A 496 REMARK 465 GLY A 497 REMARK 465 TYR A 498 REMARK 465 ARG A 499 REMARK 465 GLU A 500 REMARK 465 ASN A 501 REMARK 465 LYS A 529 REMARK 465 ALA A 530 REMARK 465 GLY A 531 REMARK 465 TYR A 532 REMARK 465 PHE A 533 REMARK 465 GLY A 534 REMARK 465 GLY A 535 REMARK 465 LEU A 536 REMARK 465 THR A 562 REMARK 465 ALA A 563 REMARK 465 THR A 564 REMARK 465 GLU A 565 REMARK 465 GLN A 566 REMARK 465 GLN A 567 REMARK 465 GLN A 568 REMARK 465 VAL A 569 REMARK 465 ASN A 570 REMARK 465 ALA A 571 REMARK 465 ALA A 572 REMARK 465 PRO A 573 REMARK 465 ALA A 574 REMARK 465 LYS A 575 REMARK 465 GLY A 576 REMARK 465 GLY A 577 REMARK 465 ARG A 578 REMARK 465 GLY A 579 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 317 NZ LYS A 356 1.40 REMARK 500 CD PRO A 392 CD2 LEU A 411 1.48 REMARK 500 CZ3 TRP A 83 CD1 PHE A 122 1.50 REMARK 500 ND2 ASN A 85 O ARG A 200 1.58 REMARK 500 OG SER A 52 CB LYS A 197 1.65 REMARK 500 OG SER A 52 CD LYS A 197 1.72 REMARK 500 OD2 ASP A 169 NE ARG A 175 1.81 REMARK 500 CG2 VAL A 195 OD1 ASP A 206 1.90 REMARK 500 O ALA A 488 N ARG A 504 1.93 REMARK 500 OG SER A 52 CG LYS A 197 1.94 REMARK 500 CZ3 TRP A 83 CE1 PHE A 122 1.94 REMARK 500 CB ASP A 169 NE ARG A 175 1.96 REMARK 500 CH2 TRP A 83 CE1 PHE A 122 2.02 REMARK 500 CD ARG A 473 CG PRO A 540 2.04 REMARK 500 O PHE A 110 CG ARG A 113 2.17 REMARK 500 CG ASP A 169 NE ARG A 175 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 113 CG ARG A 113 CD 0.169 REMARK 500 ARG A 113 CZ ARG A 113 NH1 0.099 REMARK 500 TYR A 319 C PRO A 320 N 0.147 REMARK 500 TRP A 397 C PRO A 398 N 0.154 REMARK 500 ASN A 427 C ASN A 427 O -0.118 REMARK 500 VAL A 476 C PRO A 477 N 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 113 CB - CG - CD ANGL. DEV. = -25.2 DEGREES REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 198 CB - CA - C ANGL. DEV. = 14.7 DEGREES REMARK 500 ASN A 275 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 PRO A 398 C - N - CA ANGL. DEV. = 13.6 DEGREES REMARK 500 PRO A 398 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 GLY A 470 C - N - CA ANGL. DEV. = 13.6 DEGREES REMARK 500 PRO A 477 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP A 525 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 161 37.71 -142.77 REMARK 500 GLN A 277 77.75 53.38 REMARK 500 ARG A 338 -88.01 -111.62 REMARK 500 VAL A 471 -25.15 100.76 REMARK 500 ALA A 474 -14.56 79.87 REMARK 500 TYR A 503 -161.62 -113.98 REMARK 500 ASN A 554 61.04 37.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 132 13.65 REMARK 500 SER A 349 -10.82 REMARK 500 ASN A 427 -12.92 REMARK 500 GLN A 468 -10.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HR4 RELATED DB: PDB REMARK 900 RELATED ID: 6HR9 RELATED DB: PDB DBREF 6HR6 A 50 579 UNP G3XD46 FTSI_PSEAE 50 579 SEQADV 6HR6 GLY A 45 UNP G3XD46 EXPRESSION TAG SEQADV 6HR6 TYR A 46 UNP G3XD46 EXPRESSION TAG SEQADV 6HR6 GLN A 47 UNP G3XD46 EXPRESSION TAG SEQADV 6HR6 ASP A 48 UNP G3XD46 EXPRESSION TAG SEQADV 6HR6 PRO A 49 UNP G3XD46 EXPRESSION TAG SEQRES 1 A 535 GLY TYR GLN ASP PRO ALA ARG SER VAL ARG HIS ILE ALA SEQRES 2 A 535 ILE PRO ALA HIS ARG GLY LEU ILE THR ASP ARG ASN GLY SEQRES 3 A 535 GLU PRO LEU ALA VAL SER THR PRO VAL THR THR LEU TRP SEQRES 4 A 535 ALA ASN PRO LYS GLU LEU MET THR ALA LYS GLU ARG TRP SEQRES 5 A 535 PRO GLN LEU ALA ALA ALA LEU GLY GLN ASP THR LYS LEU SEQRES 6 A 535 PHE ALA ASP ARG ILE GLU GLN ASN ALA GLU ARG GLU PHE SEQRES 7 A 535 ILE TYR LEU VAL ARG GLY LEU THR PRO GLU GLN GLY GLU SEQRES 8 A 535 GLY VAL ILE ALA LEU LYS VAL PRO GLY VAL TYR SER ILE SEQRES 9 A 535 GLU GLU PHE ARG ARG PHE TYR PRO ALA GLY GLU VAL VAL SEQRES 10 A 535 ALA HIS ALA VAL GLY PHE THR ASP VAL ASP ASP ARG GLY SEQRES 11 A 535 ARG GLU GLY ILE GLU LEU ALA PHE ASP GLU TRP LEU ALA SEQRES 12 A 535 GLY VAL PRO GLY LYS ARG GLN VAL LEU LYS ASP ARG ARG SEQRES 13 A 535 GLY ARG VAL ILE LYS ASP VAL GLN VAL THR LYS ASN ALA SEQRES 14 A 535 LYS PRO GLY LYS THR LEU ALA LEU SER ILE ASP LEU ARG SEQRES 15 A 535 LEU GLN TYR LEU ALA HIS ARG GLU LEU ARG ASN ALA LEU SEQRES 16 A 535 LEU GLU ASN GLY ALA LYS ALA GLY SER LEU VAL ILE MET SEQRES 17 A 535 ASP VAL LYS THR GLY GLU ILE LEU ALA MET THR ASN GLN SEQRES 18 A 535 PRO THR TYR ASN PRO ASN ASN ARG ARG ASN LEU GLN PRO SEQRES 19 A 535 ALA ALA MET ARG ASN ARG ALA MET ILE ASP VAL PHE GLU SEQRES 20 A 535 PRO GLY SER THR VAL LYS PRO PHE SER MET SER ALA ALA SEQRES 21 A 535 LEU ALA SER GLY ARG TRP LYS PRO SER ASP ILE VAL ASP SEQRES 22 A 535 VAL TYR PRO GLY THR LEU GLN ILE GLY ARG TYR THR ILE SEQRES 23 A 535 ARG ASP VAL SER ARG ASN SER ARG GLN LEU ASP LEU THR SEQRES 24 A 535 GLY ILE LEU ILE LYS SER SER ASN VAL GLY ILE SER LYS SEQRES 25 A 535 ILE ALA PHE ASP ILE GLY ALA GLU SER ILE TYR SER VAL SEQRES 26 A 535 MET GLN GLN VAL GLY LEU GLY GLN ASP THR GLY LEU GLY SEQRES 27 A 535 PHE PRO GLY GLU ARG VAL GLY ASN LEU PRO ASN HIS ARG SEQRES 28 A 535 LYS TRP PRO LYS ALA GLU THR ALA THR LEU ALA TYR GLY SEQRES 29 A 535 TYR GLY LEU SER VAL THR ALA ILE GLN LEU ALA HIS ALA SEQRES 30 A 535 TYR ALA ALA LEU ALA ASN ASP GLY LYS SER VAL PRO LEU SEQRES 31 A 535 SER MET THR ARG VAL ASP ARG VAL PRO ASP GLY VAL GLN SEQRES 32 A 535 VAL ILE SER PRO GLU VAL ALA SER THR VAL GLN GLY MET SEQRES 33 A 535 LEU GLN GLN VAL VAL GLU ALA GLN GLY GLY VAL PHE ARG SEQRES 34 A 535 ALA GLN VAL PRO GLY TYR HIS ALA ALA GLY LYS SER GLY SEQRES 35 A 535 THR ALA ARG LYS VAL SER VAL GLY THR LYS GLY TYR ARG SEQRES 36 A 535 GLU ASN ALA TYR ARG SER LEU PHE ALA GLY PHE ALA PRO SEQRES 37 A 535 ALA THR ASP PRO ARG ILE ALA MET VAL VAL VAL ILE ASP SEQRES 38 A 535 GLU PRO SER LYS ALA GLY TYR PHE GLY GLY LEU VAL SER SEQRES 39 A 535 ALA PRO VAL PHE SER LYS VAL MET ALA GLY ALA LEU ARG SEQRES 40 A 535 LEU MET ASN VAL PRO PRO ASP ASN LEU PRO THR ALA THR SEQRES 41 A 535 GLU GLN GLN GLN VAL ASN ALA ALA PRO ALA LYS GLY GLY SEQRES 42 A 535 ARG GLY HET NEF A1101 35 HETNAM NEF NITROCEFIN - OPEN FORM HETSYN NEF (2R)-5-[(E)-2-(2,4-DINITROPHENYL)ETHENYL]-2-[(1R)-2- HETSYN 2 NEF OXIDANYL-2-OXIDANYLIDENE-1-(2-THIOPHEN-2- HETSYN 3 NEF YLETHANOYLAMINO)ETHYL]-3,6-DIHYDRO-2H-1,3-THIAZINE-4- HETSYN 4 NEF CARBOXYLIC ACID FORMUL 2 NEF C21 H18 N4 O9 S2 FORMUL 3 HOH *20(H2 O) HELIX 1 AA1 ASN A 85 MET A 90 1 6 HELIX 2 AA2 THR A 91 GLU A 94 5 4 HELIX 3 AA3 ARG A 95 LEU A 103 1 9 HELIX 4 AA4 ASP A 106 GLN A 116 1 11 HELIX 5 AA5 THR A 130 LEU A 140 1 11 HELIX 6 AA6 ALA A 157 VAL A 160 5 4 HELIX 7 AA7 VAL A 161 GLY A 166 1 6 HELIX 8 AA8 GLU A 176 PHE A 182 1 7 HELIX 9 AA9 PHE A 182 GLY A 188 1 7 HELIX 10 AB1 ASP A 224 ASN A 242 1 19 HELIX 11 AB2 ASN A 283 ASP A 288 1 6 HELIX 12 AB3 PRO A 292 THR A 295 5 4 HELIX 13 AB4 VAL A 296 SER A 307 1 12 HELIX 14 AB5 LEU A 342 LYS A 348 1 7 HELIX 15 AB6 SER A 350 GLY A 362 1 13 HELIX 16 AB7 GLY A 362 VAL A 373 1 12 HELIX 17 AB8 PRO A 398 TYR A 407 1 10 HELIX 18 AB9 THR A 414 ASN A 427 1 14 HELIX 19 AC1 SER A 450 GLN A 468 1 19 HELIX 20 AC2 SER A 538 MET A 553 1 16 SHEET 1 AA1 2 ALA A 57 ILE A 58 0 SHEET 2 AA1 2 GLY A 191 LYS A 192 -1 O GLY A 191 N ILE A 58 SHEET 1 AA2 3 ILE A 123 LEU A 129 0 SHEET 2 AA2 3 PRO A 72 ALA A 84 -1 N LEU A 82 O LEU A 125 SHEET 3 AA2 3 VAL A 145 PHE A 154 -1 O GLU A 150 N VAL A 79 SHEET 1 AA3 4 ILE A 123 LEU A 129 0 SHEET 2 AA3 4 PRO A 72 ALA A 84 -1 N LEU A 82 O LEU A 125 SHEET 3 AA3 4 ILE A 65 THR A 66 -1 N ILE A 65 O LEU A 73 SHEET 4 AA3 4 LEU A 219 ALA A 220 1 O LEU A 219 N THR A 66 SHEET 1 AA4 5 ILE A 259 GLN A 265 0 SHEET 2 AA4 5 GLY A 247 ASP A 253 -1 N ILE A 251 O LEU A 260 SHEET 3 AA4 5 ILE A 518 ASP A 525 -1 O ALA A 519 N MET A 252 SHEET 4 AA4 5 ARG A 504 ALA A 511 -1 N SER A 505 O ILE A 524 SHEET 5 AA4 5 ALA A 482 ALA A 488 -1 N ALA A 488 O ARG A 504 SHEET 1 AA5 2 ILE A 315 ASP A 317 0 SHEET 2 AA5 2 GLN A 339 ASP A 341 -1 O LEU A 340 N VAL A 316 SHEET 1 AA6 2 THR A 322 ILE A 325 0 SHEET 2 AA6 2 TYR A 328 ARG A 331 -1 O TYR A 328 N ILE A 325 SHEET 1 AA7 2 LYS A 430 SER A 431 0 SHEET 2 AA7 2 VAL A 446 GLN A 447 -1 O VAL A 446 N SER A 431 LINK OG SER A 294 C1 NEF A1101 1555 1555 1.54 CISPEP 1 GLN A 265 PRO A 266 0 -4.76 CISPEP 2 TYR A 319 PRO A 320 0 5.91 CISPEP 3 ALA A 511 PRO A 512 0 -5.57 CRYST1 68.680 83.272 89.102 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011223 0.00000