HEADER OXIDOREDUCTASE 26-SEP-18 6HR7 TITLE HMG-COA REDUCTASE FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS APO TITLE 2 FORM AT 2.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG-COA REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.34; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN CONTAINS A POLY-HISTIDINE TAG IN N- COMPND 7 TERMINAL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS DSM SOURCE 3 2095; SOURCE 4 ORGANISM_TAXID: 523845; SOURCE 5 CELL_LINE: /; SOURCE 6 ATCC: /; SOURCE 7 ORGAN: /; SOURCE 8 TISSUE: /; SOURCE 9 CELL: /; SOURCE 10 GENE: HMGR; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 13 EXPRESSION_SYSTEM_VARIANT: BL21-AI; SOURCE 14 EXPRESSION_SYSTEM_ATCC_NUMBER: /; SOURCE 15 EXPRESSION_SYSTEM_ORGAN: /; SOURCE 16 EXPRESSION_SYSTEM_TISSUE: /; SOURCE 17 EXPRESSION_SYSTEM_CELL: /; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS HMG-COA, MEVALONATE BIOSYNTHESIS, STATINS, CHOLESTEROL BIOSYNTHESIS, KEYWDS 2 ISOPRENOIDS, STRUCTURAL REARRANGEMENT., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.WAGNER,B.VOEGELI,T.J.ERB,S.SHIMA REVDAT 3 24-JAN-24 6HR7 1 REMARK REVDAT 2 20-MAR-19 6HR7 1 JRNL REVDAT 1 13-FEB-19 6HR7 0 JRNL AUTH B.VOGELI,S.SHIMA,T.J.ERB,T.WAGNER JRNL TITL CRYSTAL STRUCTURE OF ARCHAEAL HMG-COA REDUCTASE: INSIGHTS JRNL TITL 2 INTO STRUCTURAL CHANGES OF THE C-TERMINAL HELIX OF THE JRNL TITL 3 CLASS-I ENZYME. JRNL REF FEBS LETT. V. 593 543 2019 JRNL REFN ISSN 0014-5793 JRNL PMID 30702149 JRNL DOI 10.1002/1873-3468.13331 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6193 - 5.4910 0.99 2700 164 0.1697 0.2024 REMARK 3 2 5.4910 - 4.3598 1.00 2638 146 0.1510 0.1987 REMARK 3 3 4.3598 - 3.8091 1.00 2632 143 0.1441 0.2056 REMARK 3 4 3.8091 - 3.4610 1.00 2642 131 0.1621 0.2062 REMARK 3 5 3.4610 - 3.2130 1.00 2620 131 0.1714 0.2299 REMARK 3 6 3.2130 - 3.0236 1.00 2628 157 0.1781 0.2314 REMARK 3 7 3.0236 - 2.8722 0.99 2562 132 0.2077 0.2368 REMARK 3 8 2.8722 - 2.7472 1.00 2622 139 0.2050 0.2660 REMARK 3 9 2.7472 - 2.6415 1.00 2583 152 0.2027 0.2518 REMARK 3 10 2.6415 - 2.5503 1.00 2645 105 0.2129 0.2892 REMARK 3 11 2.5503 - 2.4706 1.00 2599 132 0.2448 0.3131 REMARK 3 12 2.4706 - 2.4000 1.00 2628 99 0.2760 0.3646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6189 REMARK 3 ANGLE : 0.843 8332 REMARK 3 CHIRALITY : 0.054 977 REMARK 3 PLANARITY : 0.005 1050 REMARK 3 DIHEDRAL : 17.973 3755 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9466 13.7067 83.1802 REMARK 3 T TENSOR REMARK 3 T11: 1.2089 T22: 0.5397 REMARK 3 T33: 0.7832 T12: 0.0623 REMARK 3 T13: 0.0757 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 0.0743 L22: 0.0419 REMARK 3 L33: 0.0312 L12: -0.0066 REMARK 3 L13: -0.0462 L23: -0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.2599 S12: -0.4199 S13: -0.7756 REMARK 3 S21: 0.3203 S22: 0.1483 S23: 0.4540 REMARK 3 S31: 0.5791 S32: -0.4824 S33: -0.0032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3616 28.9525 89.4032 REMARK 3 T TENSOR REMARK 3 T11: 0.6950 T22: 0.7599 REMARK 3 T33: 0.5996 T12: 0.4128 REMARK 3 T13: 0.0490 T23: 0.1322 REMARK 3 L TENSOR REMARK 3 L11: 1.2046 L22: 0.4247 REMARK 3 L33: 1.2948 L12: -0.2416 REMARK 3 L13: 0.0821 L23: -0.6694 REMARK 3 S TENSOR REMARK 3 S11: -0.4088 S12: -0.1574 S13: -0.3996 REMARK 3 S21: 0.0544 S22: 0.0913 S23: -0.1617 REMARK 3 S31: 1.1968 S32: 0.7185 S33: -0.5212 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8520 44.9482 108.7465 REMARK 3 T TENSOR REMARK 3 T11: 0.4589 T22: 0.5659 REMARK 3 T33: 0.5247 T12: 0.1464 REMARK 3 T13: -0.0577 T23: 0.1283 REMARK 3 L TENSOR REMARK 3 L11: 1.4640 L22: 0.6243 REMARK 3 L33: 2.6129 L12: -0.1617 REMARK 3 L13: -0.6371 L23: 0.3326 REMARK 3 S TENSOR REMARK 3 S11: -0.1125 S12: -0.1396 S13: -0.0825 REMARK 3 S21: 0.1863 S22: 0.0265 S23: -0.0903 REMARK 3 S31: 0.4723 S32: 0.7284 S33: -0.0113 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2055 39.8522 85.1667 REMARK 3 T TENSOR REMARK 3 T11: 0.7904 T22: 1.8514 REMARK 3 T33: 1.0174 T12: 0.2009 REMARK 3 T13: 0.0141 T23: 0.1763 REMARK 3 L TENSOR REMARK 3 L11: 0.0313 L22: 0.0416 REMARK 3 L33: 0.0118 L12: 0.0175 REMARK 3 L13: -0.0201 L23: -0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.2140 S12: 0.5291 S13: 0.0450 REMARK 3 S21: -0.1167 S22: 0.0313 S23: -0.5044 REMARK 3 S31: -0.7187 S32: 0.2334 S33: -0.0020 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0690 34.8549 85.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.6016 T22: 0.6803 REMARK 3 T33: 0.4683 T12: 0.2030 REMARK 3 T13: 0.0345 T23: 0.1181 REMARK 3 L TENSOR REMARK 3 L11: 0.9228 L22: 1.0380 REMARK 3 L33: 2.1066 L12: -0.6319 REMARK 3 L13: 0.3996 L23: 0.4858 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: 0.1178 S13: -0.1036 REMARK 3 S21: 0.1566 S22: 0.0703 S23: -0.0475 REMARK 3 S31: 0.6415 S32: 0.6472 S33: -0.0346 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1234 52.2383 89.3833 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.4185 REMARK 3 T33: 0.5038 T12: 0.0419 REMARK 3 T13: -0.0528 T23: 0.1444 REMARK 3 L TENSOR REMARK 3 L11: 0.6848 L22: 1.4186 REMARK 3 L33: 2.4349 L12: 0.2148 REMARK 3 L13: -0.1815 L23: 0.7590 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.0807 S13: 0.0974 REMARK 3 S21: -0.1357 S22: -0.1138 S23: -0.0225 REMARK 3 S31: -0.1200 S32: 0.2158 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200011504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97662 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 3.3.22 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.613 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 1.17700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 1DQ8 REMARK 200 REMARK 200 REMARK: LONG ROD SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HMGR WAS CONCENTRATED UNTIL 10 MG/ML REMARK 280 BY USING AN AMICON ULTRA-4 CENTRIFUGATION FILTER (30 KDA CUT-OFF) REMARK 280 (MILLIPORE) AND CENTRIFUGED FOR 5 MINUTE TO REMOVE ANY REMARK 280 AGGREGATES AND DUST. 0.7 UL OF PROTEIN SAMPLE WAS SPOTTED ON A REMARK 280 96-WELL 2-DROP MRC CRYSTALLIZATION PLATES (MOLECULAR DIMENSIONS, REMARK 280 SUFFOLK, UK) AND 0.7 UL OF RESERVOIR SOLUTION WAS MIXED. THE REMARK 280 BEST CRYSTALS WERE OBTAINED AFTER SEVERAL MONTH USING A SOLUTION REMARK 280 CONTAINING 40% V/V PEG 400, 100 MM TRIS PH 8.5 AND 200 MM REMARK 280 LI2SO4., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.40400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.80800 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 140.80800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.40400 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -309.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -41.66100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 72.15897 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 211.21200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 402 REMARK 465 GLN A 403 REMARK 465 LEU A 404 REMARK 465 GLY A 405 REMARK 465 ARG A 406 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 ASN B 5 REMARK 465 HIS B 401 REMARK 465 ALA B 402 REMARK 465 GLN B 403 REMARK 465 LEU B 404 REMARK 465 GLY B 405 REMARK 465 ARG B 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 279 OE2 GLU A 326 6566 1.96 REMARK 500 OH TYR B 279 OE2 GLU B 326 6566 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 103 -12.24 82.93 REMARK 500 LYS A 280 -63.66 -91.66 REMARK 500 LEU A 282 -64.83 -98.19 REMARK 500 PHE A 293 55.35 -90.85 REMARK 500 LYS A 369 -2.49 -140.42 REMARK 500 ALA B 103 -11.64 83.28 REMARK 500 LYS B 280 -64.99 -90.98 REMARK 500 LEU B 282 -65.72 -98.53 REMARK 500 PHE B 293 55.08 -90.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 509 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 504 DBREF 6HR7 A -20 406 PDB 6HR7 6HR7 -20 406 DBREF 6HR7 B -20 406 PDB 6HR7 6HR7 -20 406 SEQRES 1 A 427 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 427 LEU VAL PRO ARG GLY SER HIS MET MET GLU LYS GLY ASN SEQRES 3 A 427 ASN GLU ILE LEU GLU LYS LEU LEU LYS LYS GLU ILE LYS SEQRES 4 A 427 PRO TYR GLN LEU ASP ASP LEU VAL GLY GLU LYS GLU ALA SEQRES 5 A 427 ILE GLU LEU ARG ARG LYS TYR ILE GLU LYS ILE SER GLN SEQRES 6 A 427 VAL GLU THR LYS HIS ILE GLY HIS TYR THR ILE ASP GLU SEQRES 7 A 427 LYS GLU ALA MET LYS LYS ASN ILE GLU ASN MET ILE GLY SEQRES 8 A 427 ALA VAL GLN ILE PRO LEU GLY PHE ALA GLY PRO LEU LYS SEQRES 9 A 427 ILE ASN GLY LYS TYR ALA ASN GLY GLU PHE TYR VAL PRO SEQRES 10 A 427 LEU ALA THR THR GLU GLY ALA LEU VAL ALA SER VAL ASN SEQRES 11 A 427 ARG GLY CYS SER ILE VAL THR LYS CYS GLY GLY VAL THR SEQRES 12 A 427 VAL ARG VAL ILE ASP ASP LYS MET THR ARG ALA PRO VAL SEQRES 13 A 427 ILE LYS THR GLU SER VAL ILE ASP ALA VAL LYS LEU LYS SEQRES 14 A 427 GLU TRP ILE LYS GLU ASN PHE GLN ARG ILE LYS GLU VAL SEQRES 15 A 427 ALA GLU SER THR THR ARG HIS GLY LYS LEU ILE ASP ILE SEQRES 16 A 427 ASN PRO ILE LEU ILE VAL GLY ARG TYR VAL TYR PRO ARG SEQRES 17 A 427 PHE VAL TYR LYS THR GLY ASP ALA MET GLY MET ASN MET SEQRES 18 A 427 VAL THR ILE ALA THR GLU LYS ALA CYS ASN PHE ILE GLU SEQRES 19 A 427 GLU GLU LEU LYS LYS GLU ASN ILE ASN ILE HIS THR VAL SEQRES 20 A 427 ALA LEU SER GLY ASN ALA CYS VAL ASP LYS LYS PRO ALA SEQRES 21 A 427 GLY ILE ASN LEU ILE GLU GLY ARG GLY LYS SER ILE ILE SEQRES 22 A 427 ALA GLU VAL PHE LEU LYS GLU GLU GLU ILE LYS LYS TYR SEQRES 23 A 427 LEU LYS THR THR SER LYS ALA ILE GLU GLN VAL ASN MET SEQRES 24 A 427 TYR LYS ASN LEU ILE GLY SER ALA ILE SER ASN SER MET SEQRES 25 A 427 GLY PHE ASN ALA HIS TYR ALA ASN ILE ILE GLY ALA LEU SEQRES 26 A 427 PHE LEU ALA THR GLY GLN ASP GLU ALA HIS ILE VAL GLU SEQRES 27 A 427 GLY SER LEU GLY ILE THR VAL ALA GLU CYS THR GLU ASP SEQRES 28 A 427 GLY VAL TYR PHE SER VAL THR LEU PRO ASP VAL PRO VAL SEQRES 29 A 427 GLY THR VAL GLY GLY GLY THR ARG VAL GLU THR GLN LYS SEQRES 30 A 427 GLU CYS LEU GLU LEU LEU GLY CYS HIS GLY GLY ASP LYS SEQRES 31 A 427 ALA LEU LYS PHE ALA GLU ILE VAL GLY ALA THR VAL LEU SEQRES 32 A 427 ALA GLY GLU LEU SER LEU ILE GLY ALA LEU SER VAL GLY SEQRES 33 A 427 HIS LEU ALA ARG ALA HIS ALA GLN LEU GLY ARG SEQRES 1 B 427 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 427 LEU VAL PRO ARG GLY SER HIS MET MET GLU LYS GLY ASN SEQRES 3 B 427 ASN GLU ILE LEU GLU LYS LEU LEU LYS LYS GLU ILE LYS SEQRES 4 B 427 PRO TYR GLN LEU ASP ASP LEU VAL GLY GLU LYS GLU ALA SEQRES 5 B 427 ILE GLU LEU ARG ARG LYS TYR ILE GLU LYS ILE SER GLN SEQRES 6 B 427 VAL GLU THR LYS HIS ILE GLY HIS TYR THR ILE ASP GLU SEQRES 7 B 427 LYS GLU ALA MET LYS LYS ASN ILE GLU ASN MET ILE GLY SEQRES 8 B 427 ALA VAL GLN ILE PRO LEU GLY PHE ALA GLY PRO LEU LYS SEQRES 9 B 427 ILE ASN GLY LYS TYR ALA ASN GLY GLU PHE TYR VAL PRO SEQRES 10 B 427 LEU ALA THR THR GLU GLY ALA LEU VAL ALA SER VAL ASN SEQRES 11 B 427 ARG GLY CYS SER ILE VAL THR LYS CYS GLY GLY VAL THR SEQRES 12 B 427 VAL ARG VAL ILE ASP ASP LYS MET THR ARG ALA PRO VAL SEQRES 13 B 427 ILE LYS THR GLU SER VAL ILE ASP ALA VAL LYS LEU LYS SEQRES 14 B 427 GLU TRP ILE LYS GLU ASN PHE GLN ARG ILE LYS GLU VAL SEQRES 15 B 427 ALA GLU SER THR THR ARG HIS GLY LYS LEU ILE ASP ILE SEQRES 16 B 427 ASN PRO ILE LEU ILE VAL GLY ARG TYR VAL TYR PRO ARG SEQRES 17 B 427 PHE VAL TYR LYS THR GLY ASP ALA MET GLY MET ASN MET SEQRES 18 B 427 VAL THR ILE ALA THR GLU LYS ALA CYS ASN PHE ILE GLU SEQRES 19 B 427 GLU GLU LEU LYS LYS GLU ASN ILE ASN ILE HIS THR VAL SEQRES 20 B 427 ALA LEU SER GLY ASN ALA CYS VAL ASP LYS LYS PRO ALA SEQRES 21 B 427 GLY ILE ASN LEU ILE GLU GLY ARG GLY LYS SER ILE ILE SEQRES 22 B 427 ALA GLU VAL PHE LEU LYS GLU GLU GLU ILE LYS LYS TYR SEQRES 23 B 427 LEU LYS THR THR SER LYS ALA ILE GLU GLN VAL ASN MET SEQRES 24 B 427 TYR LYS ASN LEU ILE GLY SER ALA ILE SER ASN SER MET SEQRES 25 B 427 GLY PHE ASN ALA HIS TYR ALA ASN ILE ILE GLY ALA LEU SEQRES 26 B 427 PHE LEU ALA THR GLY GLN ASP GLU ALA HIS ILE VAL GLU SEQRES 27 B 427 GLY SER LEU GLY ILE THR VAL ALA GLU CYS THR GLU ASP SEQRES 28 B 427 GLY VAL TYR PHE SER VAL THR LEU PRO ASP VAL PRO VAL SEQRES 29 B 427 GLY THR VAL GLY GLY GLY THR ARG VAL GLU THR GLN LYS SEQRES 30 B 427 GLU CYS LEU GLU LEU LEU GLY CYS HIS GLY GLY ASP LYS SEQRES 31 B 427 ALA LEU LYS PHE ALA GLU ILE VAL GLY ALA THR VAL LEU SEQRES 32 B 427 ALA GLY GLU LEU SER LEU ILE GLY ALA LEU SER VAL GLY SEQRES 33 B 427 HIS LEU ALA ARG ALA HIS ALA GLN LEU GLY ARG HET SO4 A 501 5 HET SO4 A 502 5 HET DTT A 503 8 HET DTT A 504 8 HET NA A 505 1 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET P6G A 509 7 HET SO4 B 501 5 HET SO4 B 502 5 HET GOL B 503 6 HET CL B 504 1 HETNAM SO4 SULFATE ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN DTT 1,4-DITHIOTHREITOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 DTT 2(C4 H10 O2 S2) FORMUL 7 NA NA 1+ FORMUL 8 GOL 4(C3 H8 O3) FORMUL 11 P6G C12 H26 O7 FORMUL 15 CL CL 1- FORMUL 16 HOH *41(H2 O) HELIX 1 AA1 ASN A 6 LYS A 14 1 9 HELIX 2 AA2 LYS A 18 TYR A 20 5 3 HELIX 3 AA3 GLN A 21 VAL A 26 1 6 HELIX 4 AA4 GLY A 27 GLN A 44 1 18 HELIX 5 AA5 ASP A 56 ASN A 64 1 9 HELIX 6 AA6 ALA A 103 LYS A 117 1 15 HELIX 7 AA7 SER A 140 ASN A 154 1 15 HELIX 8 AA8 ASN A 154 SER A 164 1 11 HELIX 9 AA9 GLY A 197 GLU A 219 1 23 HELIX 10 AB1 ALA A 239 GLY A 246 1 8 HELIX 11 AB2 GLU A 259 LEU A 266 1 8 HELIX 12 AB3 THR A 269 ASN A 281 1 13 HELIX 13 AB4 LEU A 282 SER A 288 1 7 HELIX 14 AB5 HIS A 296 GLY A 309 1 14 HELIX 15 AB6 ASP A 311 ALA A 313 5 3 HELIX 16 AB7 HIS A 314 SER A 319 1 6 HELIX 17 AB8 GLY A 347 ARG A 351 5 5 HELIX 18 AB9 VAL A 352 LEU A 362 1 11 HELIX 19 AC1 LYS A 369 HIS A 401 1 33 HELIX 20 AC2 GLU B 7 LYS B 14 1 8 HELIX 21 AC3 GLN B 21 VAL B 26 1 6 HELIX 22 AC4 GLY B 27 GLN B 44 1 18 HELIX 23 AC5 ASP B 56 ASN B 64 1 9 HELIX 24 AC6 ALA B 103 CYS B 118 1 16 HELIX 25 AC7 SER B 140 ASN B 154 1 15 HELIX 26 AC8 ASN B 154 SER B 164 1 11 HELIX 27 AC9 GLY B 197 GLU B 219 1 23 HELIX 28 AD1 ALA B 239 GLY B 246 1 8 HELIX 29 AD2 GLU B 259 LEU B 266 1 8 HELIX 30 AD3 THR B 269 ASN B 281 1 13 HELIX 31 AD4 LEU B 282 SER B 288 1 7 HELIX 32 AD5 HIS B 296 GLY B 309 1 14 HELIX 33 AD6 ASP B 311 ALA B 313 5 3 HELIX 34 AD7 HIS B 314 SER B 319 1 6 HELIX 35 AD8 GLY B 347 ARG B 351 5 5 HELIX 36 AD9 VAL B 352 LEU B 362 1 11 HELIX 37 AE1 LYS B 369 ALA B 400 1 32 SHEET 1 A 2 LEU A 76 ALA A 79 0 SHEET 2 A 2 VAL A 95 ALA A 98 -1 SHEET 1 B 6 ASN A 90 PHE A 93 0 SHEET 2 B 6 LEU A 82 GLY A 86 -1 SHEET 3 B 6 VAL A 121 LYS A 129 1 SHEET 4 B 6 GLY A 248 LYS A 258 -1 SHEET 5 B 6 GLY A 331 LEU A 338 -1 SHEET 6 B 6 ILE A 322 THR A 328 -1 SHEET 1 C 3 MET A 130 ALA A 133 0 SHEET 2 C 3 ARG A 187 LYS A 191 -1 SHEET 3 C 3 LYS A 170 ILE A 174 -1 SHEET 1 D 2 ILE A 177 VAL A 180 0 SHEET 2 D 2 TYR A 183 PRO A 186 -1 SHEET 1 E 2 VAL A 135 THR A 138 0 SHEET 2 E 2 ILE A 223 ALA A 227 -1 SHEET 1 F 2 LEU B 76 ALA B 79 0 SHEET 2 F 2 VAL B 95 ALA B 98 -1 SHEET 1 G 6 ASN B 90 PHE B 93 0 SHEET 2 G 6 LEU B 82 GLY B 86 -1 SHEET 3 G 6 VAL B 121 LYS B 129 1 SHEET 4 G 6 GLY B 248 LYS B 258 -1 SHEET 5 G 6 GLY B 331 LEU B 338 -1 SHEET 6 G 6 ILE B 322 THR B 328 -1 SHEET 1 H 3 MET B 130 ALA B 133 0 SHEET 2 H 3 ARG B 187 LYS B 191 -1 SHEET 3 H 3 LYS B 170 ILE B 174 -1 SHEET 1 I 2 ILE B 177 VAL B 180 0 SHEET 2 I 2 TYR B 183 PRO B 186 -1 SHEET 1 J 2 VAL B 135 THR B 138 0 SHEET 2 J 2 ILE B 223 ALA B 227 -1 LINK OE2 GLU A 59 NA NA A 505 1555 1555 2.80 CISPEP 1 GLY A 80 PRO A 81 0 1.19 CISPEP 2 ASN A 175 PRO A 176 0 -8.70 CISPEP 3 CYS A 233 VAL A 234 0 -8.82 CISPEP 4 GLY B 80 PRO B 81 0 0.62 CISPEP 5 ASN B 175 PRO B 176 0 -7.59 CISPEP 6 CYS B 233 VAL B 234 0 -9.76 SITE 1 AC1 5 MET A 196 GLY A 197 MET A 198 ASN A 199 SITE 2 AC1 5 MET A 200 SITE 1 AC2 4 ARG A 167 HIS A 168 GLU A 353 HIS B 49 SITE 1 AC3 5 ASN A 90 GLU A 360 GLY A 363 LYS A 372 SITE 2 AC3 5 SER B 43 SITE 1 AC4 2 ILE A 8 HIS A 401 SITE 1 AC5 2 GLU A 59 ARG A 351 SITE 1 AC6 1 ASP A 173 SITE 1 AC7 2 LEU A 25 GLY A 27 SITE 1 AC8 4 THR A 328 GLU A 329 LYS B 137 ARG B 182 SITE 1 AC9 5 GLU A 10 LYS A 14 SER B 164 THR B 165 SITE 2 AC9 5 THR B 166 SITE 1 AD1 6 ALA B 195 MET B 196 GLY B 197 MET B 198 SITE 2 AD1 6 ASN B 199 MET B 200 SITE 1 AD2 3 ILE A 142 LYS A 146 ARG B 124 SITE 1 AD3 4 LYS B 152 PHE B 155 ILE B 172 ASP B 173 SITE 1 AD4 1 LYS B 146 CRYST1 83.322 83.322 211.212 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012002 0.006929 0.000000 0.00000 SCALE2 0.000000 0.013858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004735 0.00000