HEADER TRANSFERASE 01-OCT-18 6HSJ TITLE CRYSTAL STRUCTURE OF THE ZEBRAFISH PEROXISOMAL SCP2-THIOLASE (TYPE-1) TITLE 2 IN COMPLEX WITH COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCP2-THIOLASE (TYPE-1); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STEROL CARRIER PROTEIN 2A; COMPND 5 EC: 2.3.1.176; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SCP2-THIOLASE (TYPE-1); COMPND 9 CHAIN: B; COMPND 10 SYNONYM: STEROL CARRIER PROTEIN 2A; COMPND 11 EC: 2.3.1.176; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: SCP2A, SCP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PGRO7; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGS21A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 13 ORGANISM_COMMON: ZEBRAFISH; SOURCE 14 ORGANISM_TAXID: 7955; SOURCE 15 GENE: SCP2A, SCP2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: PGRO7; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGS21A KEYWDS THIOLASE FOLD, PEROXISOME, TRANSFERASE, COA BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.K.WIERENGA,T.R.KIEMA,C.J.THAPA REVDAT 3 24-JAN-24 6HSJ 1 REMARK REVDAT 2 06-FEB-19 6HSJ 1 JRNL REVDAT 1 02-JAN-19 6HSJ 0 JRNL AUTH T.R.KIEMA,C.J.THAPA,M.LAITAOJA,W.SCHMITZ,M.M.MAKSIMAINEN, JRNL AUTH 2 T.FUKAO,J.ROUVINEN,J.JANIS,R.K.WIERENGA JRNL TITL THE PEROXISOMAL ZEBRAFISH SCP2-THIOLASE (TYPE-1) IS A WEAK JRNL TITL 2 TRANSIENT DIMER AS REVEALED BY CRYSTAL STRUCTURES AND NATIVE JRNL TITL 3 MASS SPECTROMETRY. JRNL REF BIOCHEM. J. V. 476 307 2019 JRNL REFN ESSN 1470-8728 JRNL PMID 30573650 JRNL DOI 10.1042/BCJ20180788 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 133408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 524 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 542 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6151 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5662 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8326 ; 1.589 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13188 ; 1.520 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 801 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 302 ;33.563 ;23.013 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1047 ;12.462 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;11.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 788 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6971 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1199 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5226 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3017 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2616 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 394 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.012 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 116 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 42 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3126 ; 1.154 ; 1.268 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3123 ; 1.153 ; 1.267 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3906 ; 1.805 ; 1.897 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3907 ; 1.805 ; 1.898 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3025 ; 2.067 ; 1.611 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3025 ; 2.067 ; 1.611 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4404 ; 3.236 ; 2.308 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4405 ; 3.236 ; 2.308 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6918 ; 4.429 ;16.450 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6919 ; 4.430 ;16.456 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6HSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9174 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 3, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 47.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0232 REMARK 200 STARTING MODEL: 6HRV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 15 % PEG3350, REMARK 280 250 MM SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.48000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.48000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 826 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 119 REMARK 465 GLY A 120 REMARK 465 SER A 121 REMARK 465 LEU A 122 REMARK 465 SER A 123 REMARK 465 SER A 124 REMARK 465 LYS A 125 REMARK 465 TYR A 126 REMARK 465 MET A 127 REMARK 465 ASP A 128 REMARK 465 ARG A 129 REMARK 465 THR A 130 REMARK 465 GLN A 402 REMARK 465 GLU A 403 REMARK 465 THR A 404 REMARK 465 SER A 405 REMARK 465 SER A 406 REMARK 465 MET B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 119 REMARK 465 GLY B 120 REMARK 465 SER B 121 REMARK 465 LEU B 122 REMARK 465 SER B 123 REMARK 465 SER B 124 REMARK 465 GLN B 402 REMARK 465 GLU B 403 REMARK 465 THR B 404 REMARK 465 SER B 405 REMARK 465 SER B 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 59.92 -91.01 REMARK 500 SER A 91 -117.56 -99.21 REMARK 500 GLU A 210 -129.04 58.07 REMARK 500 ASN B 85 47.66 -165.83 REMARK 500 ASN B 86 -130.74 51.14 REMARK 500 ASN B 86 -132.03 53.32 REMARK 500 MET B 117 -168.15 -119.98 REMARK 500 TYR B 126 60.28 66.49 REMARK 500 PHE B 209 117.19 -160.93 REMARK 500 GLU B 210 -122.65 53.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 503 DBREF 6HSJ A 1 406 UNP Q6P4V5 Q6P4V5_DANRE 1 406 DBREF 6HSJ B 1 406 UNP Q6P4V5 Q6P4V5_DANRE 1 406 SEQADV 6HSJ MET A -7 UNP Q6P4V5 INITIATING METHIONINE SEQADV 6HSJ HIS A -6 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS A -5 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS A -4 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS A -3 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS A -2 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS A -1 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ ALA A 0 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ MET B -7 UNP Q6P4V5 INITIATING METHIONINE SEQADV 6HSJ HIS B -6 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS B -5 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS B -4 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS B -3 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS B -2 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ HIS B -1 UNP Q6P4V5 EXPRESSION TAG SEQADV 6HSJ ALA B 0 UNP Q6P4V5 EXPRESSION TAG SEQRES 1 A 414 MET HIS HIS HIS HIS HIS HIS ALA MET ALA ALA LEU ARG SEQRES 2 A 414 ASN ARG VAL PHE VAL ILE GLY VAL GLY MET THR LYS PHE SEQRES 3 A 414 GLU LYS PRO GLY ALA ARG ASP ILE ASP TYR PRO ASP MET SEQRES 4 A 414 ALA LYS GLU ALA GLY GLN ARG ALA LEU ALA ASP ALA GLY SEQRES 5 A 414 ILE LYS TYR SER ALA ILE GLN GLN ALA CYS VAL GLY TYR SEQRES 6 A 414 VAL TYR GLY ASP SER THR CYS GLY GLN ARG ALA ILE TYR SEQRES 7 A 414 HIS SER LEU GLY LEU SER GLY ILE PRO ILE ILE ASN VAL SEQRES 8 A 414 ASN ASN ASN CYS SER THR GLY SER THR ALA LEU PHE MET SEQRES 9 A 414 GLY ARG GLN LEU ILE GLN GLY GLY LEU ALA ASP CYS VAL SEQRES 10 A 414 LEU ALA LEU GLY PHE GLU LYS MET GLU ARG GLY SER LEU SEQRES 11 A 414 SER SER LYS TYR MET ASP ARG THR ASN PRO MET ASP LYS SEQRES 12 A 414 HIS MET GLU VAL MET ILE ASN ARG TYR GLY LEU ALA ALA SEQRES 13 A 414 VAL PRO ALA ALA PRO GLN MET PHE GLY ASN ALA GLY ARG SEQRES 14 A 414 GLU HIS MET GLU LYS TYR GLY THR LYS PRO GLU HIS PHE SEQRES 15 A 414 ALA LYS VAL ALA TRP LYS ASN HIS LYS HIS SER THR ASN SEQRES 16 A 414 ASN PRO TYR SER GLN PHE GLN ASP GLU TYR SER LEU GLU SEQRES 17 A 414 GLN VAL ILE ASP SER ARG LYS VAL PHE GLU PHE LEU THR SEQRES 18 A 414 LEU LEU GLN CYS CYS PRO THR SER ASP GLY ALA GLY ALA SEQRES 19 A 414 ALA VAL LEU ALA SER GLU SER PHE VAL ARG ARG ASN GLY SEQRES 20 A 414 LEU GLU LYS LYS ALA VAL GLU ILE VAL ALA GLN GLU MET SEQRES 21 A 414 VAL THR ASP LEU SER THR THR PHE GLU GLU ASN SER CYS SEQRES 22 A 414 MET LYS MET VAL GLY TYR ASP MET THR ARG LEU ALA ALA SEQRES 23 A 414 GLU ARG CYS TYR ASP THR ALA GLY VAL LYS PRO SER ASP SEQRES 24 A 414 VAL ASP VAL ILE GLU LEU HIS ASP CYS PHE SER ALA ASN SEQRES 25 A 414 GLU LEU ILE THR TYR GLU ALA LEU GLY LEU CYS PRO GLU SEQRES 26 A 414 GLY LYS ALA GLY GLU LEU ILE ASP ARG GLY ASP ASN THR SEQRES 27 A 414 TYR GLY GLY LYS TRP VAL ILE ASN PRO SER GLY GLY LEU SEQRES 28 A 414 ILE SER LYS GLY HIS PRO LEU GLY ALA THR GLY LEU ALA SEQRES 29 A 414 GLN CYS ALA GLU LEU CYS TRP GLN LEU ARG ALA GLU ALA SEQRES 30 A 414 GLY PRO ARG GLN VAL PRO GLY ALA LYS LEU ALA LEU GLN SEQRES 31 A 414 HIS ASN ILE GLY LEU GLY GLY ALA VAL VAL VAL THR LEU SEQRES 32 A 414 TYR LYS MET GLY PHE PRO GLN GLU THR SER SER SEQRES 1 B 414 MET HIS HIS HIS HIS HIS HIS ALA MET ALA ALA LEU ARG SEQRES 2 B 414 ASN ARG VAL PHE VAL ILE GLY VAL GLY MET THR LYS PHE SEQRES 3 B 414 GLU LYS PRO GLY ALA ARG ASP ILE ASP TYR PRO ASP MET SEQRES 4 B 414 ALA LYS GLU ALA GLY GLN ARG ALA LEU ALA ASP ALA GLY SEQRES 5 B 414 ILE LYS TYR SER ALA ILE GLN GLN ALA CYS VAL GLY TYR SEQRES 6 B 414 VAL TYR GLY ASP SER THR CYS GLY GLN ARG ALA ILE TYR SEQRES 7 B 414 HIS SER LEU GLY LEU SER GLY ILE PRO ILE ILE ASN VAL SEQRES 8 B 414 ASN ASN ASN CSO SER THR GLY SER THR ALA LEU PHE MET SEQRES 9 B 414 GLY ARG GLN LEU ILE GLN GLY GLY LEU ALA ASP CYS VAL SEQRES 10 B 414 LEU ALA LEU GLY PHE GLU LYS MET GLU ARG GLY SER LEU SEQRES 11 B 414 SER SER LYS TYR MET ASP ARG THR ASN PRO MET ASP LYS SEQRES 12 B 414 HIS MET GLU VAL MET ILE ASN ARG TYR GLY LEU ALA ALA SEQRES 13 B 414 VAL PRO ALA ALA PRO GLN MET PHE GLY ASN ALA GLY ARG SEQRES 14 B 414 GLU HIS MET GLU LYS TYR GLY THR LYS PRO GLU HIS PHE SEQRES 15 B 414 ALA LYS VAL ALA TRP LYS ASN HIS LYS HIS SER THR ASN SEQRES 16 B 414 ASN PRO TYR SER GLN PHE GLN ASP GLU TYR SER LEU GLU SEQRES 17 B 414 GLN VAL ILE ASP SER ARG LYS VAL PHE GLU PHE LEU THR SEQRES 18 B 414 LEU LEU GLN CYS CYS PRO THR SER ASP GLY ALA GLY ALA SEQRES 19 B 414 ALA VAL LEU ALA SER GLU SER PHE VAL ARG ARG ASN GLY SEQRES 20 B 414 LEU GLU LYS LYS ALA VAL GLU ILE VAL ALA GLN GLU MET SEQRES 21 B 414 VAL THR ASP LEU SER THR THR PHE GLU GLU ASN SER CYS SEQRES 22 B 414 MET LYS MET VAL GLY TYR ASP MET THR ARG LEU ALA ALA SEQRES 23 B 414 GLU ARG CYS TYR ASP THR ALA GLY VAL LYS PRO SER ASP SEQRES 24 B 414 VAL ASP VAL ILE GLU LEU HIS ASP CYS PHE SER ALA ASN SEQRES 25 B 414 GLU LEU ILE THR TYR GLU ALA LEU GLY LEU CYS PRO GLU SEQRES 26 B 414 GLY LYS ALA GLY GLU LEU ILE ASP ARG GLY ASP ASN THR SEQRES 27 B 414 TYR GLY GLY LYS TRP VAL ILE ASN PRO SER GLY GLY LEU SEQRES 28 B 414 ILE SER LYS GLY HIS PRO LEU GLY ALA THR GLY LEU ALA SEQRES 29 B 414 GLN CYS ALA GLU LEU CYS TRP GLN LEU ARG ALA GLU ALA SEQRES 30 B 414 GLY PRO ARG GLN VAL PRO GLY ALA LYS LEU ALA LEU GLN SEQRES 31 B 414 HIS ASN ILE GLY LEU GLY GLY ALA VAL VAL VAL THR LEU SEQRES 32 B 414 TYR LYS MET GLY PHE PRO GLN GLU THR SER SER MODRES 6HSJ CSO B 87 CYS MODIFIED RESIDUE HET CSO B 87 10 HET ACT A 501 4 HET ACT A 502 4 HET GOL B 501 6 HET GOL B 502 6 HET COA B 503 48 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM COA COENZYME A HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 COA C21 H36 N7 O16 P3 S FORMUL 8 HOH *542(H2 O) HELIX 1 AA1 ASP A 27 GLY A 44 1 18 HELIX 2 AA2 LYS A 46 ILE A 50 5 5 HELIX 3 AA3 THR A 63 GLY A 74 1 12 HELIX 4 AA4 THR A 92 GLY A 103 1 12 HELIX 5 AA5 PRO A 132 GLY A 145 1 14 HELIX 6 AA6 PRO A 150 GLY A 168 1 19 HELIX 7 AA7 LYS A 170 THR A 186 1 17 HELIX 8 AA8 SER A 198 SER A 205 1 8 HELIX 9 AA9 LEU A 215 CYS A 217 5 3 HELIX 10 AB1 GLU A 232 GLY A 239 1 8 HELIX 11 AB2 LEU A 240 LYS A 243 5 4 HELIX 12 AB3 SER A 264 VAL A 269 1 6 HELIX 13 AB4 GLY A 270 GLY A 286 1 17 HELIX 14 AB5 LYS A 288 VAL A 292 5 5 HELIX 15 AB6 PHE A 301 LEU A 312 1 12 HELIX 16 AB7 LYS A 319 GLY A 327 1 9 HELIX 17 AB8 GLY A 341 GLY A 347 1 7 HELIX 18 AB9 ALA A 352 ARG A 366 1 15 HELIX 19 AC1 ALA A 369 GLN A 373 5 5 HELIX 20 AC2 ASP B 27 GLY B 44 1 18 HELIX 21 AC3 LYS B 46 ILE B 50 5 5 HELIX 22 AC4 THR B 63 TYR B 70 1 8 HELIX 23 AC5 ASN B 85 CSO B 87 5 3 HELIX 24 AC6 SER B 88 GLY B 103 1 16 HELIX 25 AC7 MET B 133 GLY B 145 1 13 HELIX 26 AC8 PRO B 150 GLY B 168 1 19 HELIX 27 AC9 LYS B 170 THR B 186 1 17 HELIX 28 AD1 SER B 198 SER B 205 1 8 HELIX 29 AD2 LEU B 215 CYS B 217 5 3 HELIX 30 AD3 GLU B 232 GLY B 239 1 8 HELIX 31 AD4 LEU B 240 LYS B 243 5 4 HELIX 32 AD5 SER B 257 GLU B 262 1 6 HELIX 33 AD6 SER B 264 VAL B 269 1 6 HELIX 34 AD7 GLY B 270 GLY B 286 1 17 HELIX 35 AD8 LYS B 288 VAL B 292 5 5 HELIX 36 AD9 PHE B 301 LEU B 312 1 12 HELIX 37 AE1 LYS B 319 ARG B 326 1 8 HELIX 38 AE2 GLY B 341 GLY B 347 1 7 HELIX 39 AE3 ALA B 352 ARG B 366 1 15 HELIX 40 AE4 ALA B 369 GLN B 373 5 5 SHEET 1 AA110 ILE A 80 ASN A 82 0 SHEET 2 AA110 GLN A 52 GLY A 56 1 N VAL A 55 O ILE A 81 SHEET 3 AA110 CYS A 108 GLU A 115 1 O LEU A 112 N CYS A 54 SHEET 4 AA110 GLY A 223 SER A 231 -1 O ALA A 227 N ALA A 111 SHEET 5 AA110 VAL A 8 MET A 15 -1 N GLY A 12 O VAL A 228 SHEET 6 AA110 VAL A 245 VAL A 253 -1 O VAL A 245 N VAL A 10 SHEET 7 AA110 VAL A 391 MET A 398 -1 O LYS A 397 N GLU A 246 SHEET 8 AA110 ALA A 380 ILE A 385 -1 N ASN A 384 O VAL A 392 SHEET 9 AA110 VAL A 294 GLU A 296 1 N GLU A 296 O HIS A 383 SHEET 10 AA110 VAL A 336 ILE A 337 1 O VAL A 336 N ILE A 295 SHEET 1 AA2 2 LYS A 207 PHE A 209 0 SHEET 2 AA2 2 LEU A 212 THR A 213 -1 O LEU A 212 N VAL A 208 SHEET 1 AA310 ILE B 80 VAL B 83 0 SHEET 2 AA310 ALA B 53 GLY B 56 1 N VAL B 55 O ILE B 81 SHEET 3 AA310 CYS B 108 GLU B 115 1 O LEU B 112 N GLY B 56 SHEET 4 AA310 GLY B 223 SER B 231 -1 O ALA B 227 N ALA B 111 SHEET 5 AA310 VAL B 8 MET B 15 -1 N GLY B 12 O VAL B 228 SHEET 6 AA310 VAL B 245 VAL B 253 -1 O VAL B 245 N VAL B 10 SHEET 7 AA310 ALA B 390 MET B 398 -1 O LEU B 395 N ALA B 249 SHEET 8 AA310 ALA B 380 GLY B 386 -1 N GLN B 382 O THR B 394 SHEET 9 AA310 VAL B 294 GLU B 296 1 N GLU B 296 O HIS B 383 SHEET 10 AA310 VAL B 336 ILE B 337 1 O VAL B 336 N ILE B 295 SHEET 1 AA4 2 LYS B 207 PHE B 209 0 SHEET 2 AA4 2 LEU B 212 THR B 213 -1 O LEU B 212 N VAL B 208 LINK C ASN B 86 N CSO B 87 1555 1555 1.33 LINK C CSO B 87 N SER B 88 1555 1555 1.34 CISPEP 1 GLY B 388 GLY B 389 0 -2.02 SITE 1 AC1 8 THR A 92 LEU A 94 GLN A 250 GLY A 354 SITE 2 AC1 8 GLN A 382 ASN A 384 HOH A 740 HOH A 756 SITE 1 AC2 11 THR A 92 LEU A 350 GLY A 351 THR A 353 SITE 2 AC2 11 GLY A 354 ASN A 384 ILE A 385 LEU A 387 SITE 3 AC2 11 HOH A 618 HOH A 639 HOH A 736 SITE 1 AC3 6 GLU A 261 GLU A 262 ARG B 38 PRO B 189 SITE 2 AC3 6 TYR B 190 HOH B 625 SITE 1 AC4 9 GLU B 162 LYS B 166 TYR B 167 SER B 264 SITE 2 AC4 9 MET B 266 LYS B 267 TYR B 271 HOH B 633 SITE 3 AC4 9 HOH B 742 SITE 1 AC5 16 LYS B 20 ALA B 152 PHE B 193 ARG B 206 SITE 2 AC5 16 LEU B 214 CYS B 217 CYS B 218 PRO B 219 SITE 3 AC5 16 HIS B 348 HOH B 608 HOH B 614 HOH B 636 SITE 4 AC5 16 HOH B 730 HOH B 743 HOH B 758 HOH B 788 CRYST1 132.960 80.880 96.470 90.00 126.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007521 0.000000 0.005523 0.00000 SCALE2 0.000000 0.012364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012861 0.00000