HEADER TRANSCRIPTION 03-OCT-18 6HT5 TITLE OCT4/SOX2:UTF1 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*CP*CP*TP*CP*AP*TP*TP*GP*TP*TP*AP*TP*GP*CP*TP*AP*GP*TP*GP*AP*AP*G) COMPND 4 -3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*TP*CP*AP*CP*TP*AP*GP*CP*AP*TP*AP*AP*CP*AP*AP*TP*GP*AP*GP*G)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: TRANSCRIPTION FACTOR SOX-2; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: POU DOMAIN, CLASS 5, TRANSCRIPTION FACTOR 1; COMPND 19 CHAIN: E; COMPND 20 SYNONYM: NF-A3,OCTAMER-BINDING PROTEIN 3,OCT-3,OCTAMER-BINDING COMPND 21 PROTEIN 4,OCT-4,OCTAMER-BINDING TRANSCRIPTION FACTOR 3,OTF-3; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: SOX2, SOX-2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 GENE: POU5F1, OCT-3, OCT-4, OTF-3, OTF3; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL REPROGRAMMING, TRANSCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.VAHOKOSKI,D.MEUSCH,M.GROVES,V.POGENBERG,M.WILMANNS REVDAT 2 24-JAN-24 6HT5 1 REMARK REVDAT 1 23-OCT-19 6HT5 0 JRNL AUTH J.VAHOKOSKI,V.POGENBERG,M.WILMANNS JRNL TITL OCT4/SOX2:UTF1 STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.060 REMARK 3 FREE R VALUE TEST SET COUNT : 683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6850 - 5.8990 0.99 1618 142 0.1742 0.1935 REMARK 3 2 5.8990 - 4.6835 1.00 1568 136 0.2080 0.2912 REMARK 3 3 4.6835 - 4.0918 1.00 1544 137 0.1952 0.2531 REMARK 3 4 4.0918 - 3.7179 1.00 1543 134 0.2331 0.3047 REMARK 3 5 3.7179 - 3.4515 1.00 1523 134 0.2743 0.3485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2415 REMARK 3 ANGLE : 0.647 3438 REMARK 3 CHIRALITY : 0.034 383 REMARK 3 PLANARITY : 0.003 291 REMARK 3 DIHEDRAL : 21.649 1313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4340 50.5346 2.0900 REMARK 3 T TENSOR REMARK 3 T11: 2.2741 T22: 1.3438 REMARK 3 T33: 2.5186 T12: -0.0536 REMARK 3 T13: -0.2459 T23: 0.1581 REMARK 3 L TENSOR REMARK 3 L11: 6.3861 L22: 0.9513 REMARK 3 L33: 5.3647 L12: -2.2180 REMARK 3 L13: -5.5155 L23: 2.1387 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: 1.4253 S13: -1.8331 REMARK 3 S21: 3.9639 S22: -0.0389 S23: 0.4057 REMARK 3 S31: 4.7930 S32: -2.0566 S33: 0.2988 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0274 62.5789 6.0650 REMARK 3 T TENSOR REMARK 3 T11: 1.3794 T22: 0.9764 REMARK 3 T33: 1.3297 T12: -0.0215 REMARK 3 T13: 0.1461 T23: -0.0583 REMARK 3 L TENSOR REMARK 3 L11: 6.4922 L22: 4.0871 REMARK 3 L33: 5.3724 L12: 2.0418 REMARK 3 L13: -0.2782 L23: -3.2615 REMARK 3 S TENSOR REMARK 3 S11: 1.0568 S12: -0.3507 S13: -0.2825 REMARK 3 S21: 0.5390 S22: -0.4326 S23: 1.4936 REMARK 3 S31: 1.6029 S32: 0.0744 S33: -0.6633 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1171 60.4698 12.9915 REMARK 3 T TENSOR REMARK 3 T11: 1.7372 T22: 2.0629 REMARK 3 T33: 2.8153 T12: -0.1466 REMARK 3 T13: 0.4940 T23: -0.0995 REMARK 3 L TENSOR REMARK 3 L11: 6.6441 L22: 9.0570 REMARK 3 L33: 8.6353 L12: 2.0084 REMARK 3 L13: -1.4975 L23: 0.7920 REMARK 3 S TENSOR REMARK 3 S11: -0.9899 S12: 0.5013 S13: -0.7176 REMARK 3 S21: 1.9475 S22: -0.8084 S23: 2.1269 REMARK 3 S31: 1.9573 S32: -0.3567 S33: 1.6331 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0743 54.6812 9.7545 REMARK 3 T TENSOR REMARK 3 T11: 1.8187 T22: 1.4162 REMARK 3 T33: 3.1678 T12: -0.0456 REMARK 3 T13: -0.0261 T23: -0.2915 REMARK 3 L TENSOR REMARK 3 L11: 5.1738 L22: 3.7361 REMARK 3 L33: 1.9023 L12: -4.2727 REMARK 3 L13: 0.1555 L23: 0.4313 REMARK 3 S TENSOR REMARK 3 S11: 0.2729 S12: 1.5947 S13: -2.7420 REMARK 3 S21: -2.1510 S22: -0.8430 S23: 0.9706 REMARK 3 S31: 0.4443 S32: 0.6069 S33: 0.1614 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3768 59.1424 4.4679 REMARK 3 T TENSOR REMARK 3 T11: 1.3471 T22: 1.2626 REMARK 3 T33: 1.4813 T12: 0.2747 REMARK 3 T13: 0.0595 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 3.3000 L22: 3.8088 REMARK 3 L33: 4.7688 L12: 1.9095 REMARK 3 L13: -1.5414 L23: 0.4229 REMARK 3 S TENSOR REMARK 3 S11: -0.7152 S12: -1.1942 S13: -1.6778 REMARK 3 S21: 0.6827 S22: 0.0994 S23: -0.2886 REMARK 3 S31: 1.1340 S32: 0.5740 S33: 0.5314 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9446 65.2433 0.4146 REMARK 3 T TENSOR REMARK 3 T11: 1.0626 T22: 1.0924 REMARK 3 T33: 0.9537 T12: 0.0641 REMARK 3 T13: 0.1382 T23: -0.1740 REMARK 3 L TENSOR REMARK 3 L11: 3.8414 L22: 6.6216 REMARK 3 L33: 5.5177 L12: 0.6568 REMARK 3 L13: 0.1505 L23: -0.8703 REMARK 3 S TENSOR REMARK 3 S11: 1.4121 S12: 1.5270 S13: -1.0291 REMARK 3 S21: -0.2938 S22: -0.6969 S23: -1.0675 REMARK 3 S31: 0.7978 S32: 0.9780 S33: -0.6635 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 30 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4273 67.2901 11.2200 REMARK 3 T TENSOR REMARK 3 T11: 1.8741 T22: 1.1038 REMARK 3 T33: 0.1722 T12: 0.2347 REMARK 3 T13: -0.1190 T23: 0.2133 REMARK 3 L TENSOR REMARK 3 L11: 7.8128 L22: 5.4035 REMARK 3 L33: 5.1552 L12: 3.8498 REMARK 3 L13: 2.7414 L23: 5.2136 REMARK 3 S TENSOR REMARK 3 S11: 0.4347 S12: 0.2434 S13: -1.7887 REMARK 3 S21: 2.4182 S22: 0.8571 S23: -0.5657 REMARK 3 S31: 0.8810 S32: 0.7324 S33: -0.0920 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 46 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7473 77.3869 -1.9889 REMARK 3 T TENSOR REMARK 3 T11: 1.0779 T22: 1.1042 REMARK 3 T33: 0.7637 T12: 0.2626 REMARK 3 T13: 0.1834 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 6.4619 L22: 5.0591 REMARK 3 L33: 5.0514 L12: 3.5249 REMARK 3 L13: 5.6403 L23: 2.6347 REMARK 3 S TENSOR REMARK 3 S11: -1.0478 S12: 1.1782 S13: 1.9575 REMARK 3 S21: -0.2315 S22: -1.1506 S23: 0.0412 REMARK 3 S31: -0.3381 S32: 0.5899 S33: 1.3170 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 67 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6796 61.1913 -6.2260 REMARK 3 T TENSOR REMARK 3 T11: 1.0202 T22: 1.2864 REMARK 3 T33: 1.1973 T12: 0.0699 REMARK 3 T13: 0.1042 T23: -0.2187 REMARK 3 L TENSOR REMARK 3 L11: 7.5677 L22: 5.1533 REMARK 3 L33: 4.8644 L12: -0.9862 REMARK 3 L13: 4.3849 L23: -3.9843 REMARK 3 S TENSOR REMARK 3 S11: 0.3844 S12: 1.7193 S13: -1.1176 REMARK 3 S21: -1.8093 S22: 0.1125 S23: 1.9872 REMARK 3 S31: 1.3342 S32: 0.1789 S33: -0.1435 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID -1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4810 76.0006 -9.9153 REMARK 3 T TENSOR REMARK 3 T11: 0.8766 T22: 1.1538 REMARK 3 T33: 1.1258 T12: 0.1140 REMARK 3 T13: 0.1041 T23: 0.1656 REMARK 3 L TENSOR REMARK 3 L11: 3.8077 L22: 3.4986 REMARK 3 L33: 5.4333 L12: -2.7810 REMARK 3 L13: 3.0529 L23: 0.1490 REMARK 3 S TENSOR REMARK 3 S11: 1.4972 S12: 1.9778 S13: 0.3761 REMARK 3 S21: -0.6779 S22: -0.6923 S23: 0.3021 REMARK 3 S31: 0.6354 S32: 0.0723 S33: -0.7506 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 24 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3488 83.8685 0.1838 REMARK 3 T TENSOR REMARK 3 T11: 0.8186 T22: 0.8871 REMARK 3 T33: 1.0218 T12: 0.0427 REMARK 3 T13: 0.0436 T23: -0.2411 REMARK 3 L TENSOR REMARK 3 L11: 3.9857 L22: 5.2493 REMARK 3 L33: 2.3547 L12: -3.3090 REMARK 3 L13: 0.1138 L23: -0.5466 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.3541 S13: 1.1234 REMARK 3 S21: 0.3596 S22: 0.1818 S23: 0.0499 REMARK 3 S31: -0.2939 S32: 0.3505 S33: -0.3388 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200010326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8480 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 48.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1O4X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM 4-MORPHOLINEETHANESULFONIC ACID REMARK 280 AT PH 6.0, 33% V/V 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.89000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.89000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.89000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 41 REMARK 465 ALA D 42 REMARK 465 MET D 43 REMARK 465 THR D 121 REMARK 465 LYS D 122 REMARK 465 THR D 123 REMARK 465 ILE E 232 REMARK 465 GLU E 233 REMARK 465 ASN E 234 REMARK 465 ARG E 235 REMARK 465 VAL E 236 REMARK 465 ARG E 237 REMARK 465 TRP E 238 REMARK 465 SER E 239 REMARK 465 LEU E 240 REMARK 465 GLU E 241 REMARK 465 THR E 242 REMARK 465 MET E 243 REMARK 465 PHE E 244 REMARK 465 LEU E 245 REMARK 465 LYS E 246 REMARK 465 SER E 247 REMARK 465 PRO E 248 REMARK 465 LYS E 249 REMARK 465 PRO E 250 REMARK 465 SER E 251 REMARK 465 LEU E 252 REMARK 465 GLN E 253 REMARK 465 GLN E 254 REMARK 465 ILE E 255 REMARK 465 THR E 256 REMARK 465 HIS E 257 REMARK 465 ILE E 258 REMARK 465 ALA E 259 REMARK 465 ASN E 260 REMARK 465 GLN E 261 REMARK 465 LEU E 262 REMARK 465 GLY E 263 REMARK 465 LEU E 264 REMARK 465 GLU E 265 REMARK 465 LYS E 266 REMARK 465 ASP E 267 REMARK 465 VAL E 268 REMARK 465 VAL E 269 REMARK 465 ARG E 270 REMARK 465 VAL E 271 REMARK 465 TRP E 272 REMARK 465 PHE E 273 REMARK 465 SER E 274 REMARK 465 ASN E 275 REMARK 465 ARG E 276 REMARK 465 ARG E 277 REMARK 465 GLN E 278 REMARK 465 LYS E 279 REMARK 465 GLY E 280 REMARK 465 LYS E 281 REMARK 465 ARG E 282 REMARK 465 SER E 283 REMARK 465 SER E 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 0 O5' REMARK 470 LYS D 47 CG CD CE NZ REMARK 470 LYS D 70 CG CD CE NZ REMARK 470 GLU D 75 CG CD OE1 OE2 REMARK 470 LYS D 108 CG CD CE NZ REMARK 470 LYS E 135 CG CD CE NZ REMARK 470 LYS E 139 CG CD CE NZ REMARK 470 GLU E 140 CG CD OE1 OE2 REMARK 470 GLU E 142 O REMARK 470 LYS E 172 CG CD CE NZ REMARK 470 LEU E 185 O REMARK 470 LYS E 190 CE NZ REMARK 470 LYS E 194 CD CE NZ REMARK 470 LYS E 201 CE NZ REMARK 470 LYS E 217 CG CD CE NZ REMARK 470 LYS E 226 CG CD CE NZ REMARK 470 ARG E 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 228 CD CE NZ REMARK 470 ARG E 229 CG CD NE CZ NH1 NH2 REMARK 470 SER E 231 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 51 -167.18 -77.91 REMARK 500 PRO D 69 -173.56 -69.14 REMARK 500 LYS D 70 16.37 58.40 REMARK 500 GLN E 186 31.77 -99.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6HT5 A -1 20 PDB 6HT5 6HT5 -1 20 DBREF 6HT5 B 0 20 PDB 6HT5 6HT5 0 20 DBREF 6HT5 D 44 123 UNP P48432 SOX2_MOUSE 41 120 DBREF 6HT5 E 133 284 UNP P20263 PO5F1_MOUSE 131 282 SEQADV 6HT5 GLY D 41 UNP P48432 EXPRESSION TAG SEQADV 6HT5 ALA D 42 UNP P48432 EXPRESSION TAG SEQADV 6HT5 MET D 43 UNP P48432 EXPRESSION TAG SEQADV 6HT5 GLY E 131 UNP P20263 EXPRESSION TAG SEQADV 6HT5 ALA E 132 UNP P20263 EXPRESSION TAG SEQADV 6HT5 SER E 180 UNP P20263 CYS 178 ENGINEERED MUTATION SEQADV 6HT5 SER E 193 UNP P20263 CYS 191 ENGINEERED MUTATION SEQADV 6HT5 SER E 216 UNP P20263 CYS 214 ENGINEERED MUTATION SEQADV 6HT5 SER E 247 UNP P20263 CYS 245 ENGINEERED MUTATION SEQADV 6HT5 SER E 274 UNP P20263 CYS 272 ENGINEERED MUTATION SEQRES 1 A 22 DC DC DT DC DA DT DT DG DT DT DA DT DG SEQRES 2 A 22 DC DT DA DG DT DG DA DA DG SEQRES 1 B 21 DT DT DC DA DC DT DA DG DC DA DT DA DA SEQRES 2 B 21 DC DA DA DT DG DA DG DG SEQRES 1 D 83 GLY ALA MET ASP ARG VAL LYS ARG PRO MET ASN ALA PHE SEQRES 2 D 83 MET VAL TRP SER ARG GLY GLN ARG ARG LYS MET ALA GLN SEQRES 3 D 83 GLU ASN PRO LYS MET HIS ASN SER GLU ILE SER LYS ARG SEQRES 4 D 83 LEU GLY ALA GLU TRP LYS LEU LEU SER GLU THR GLU LYS SEQRES 5 D 83 ARG PRO PHE ILE ASP GLU ALA LYS ARG LEU ARG ALA LEU SEQRES 6 D 83 HIS MET LYS GLU HIS PRO ASP TYR LYS TYR ARG PRO ARG SEQRES 7 D 83 ARG LYS THR LYS THR SEQRES 1 E 154 GLY ALA ASP MET LYS ALA LEU GLN LYS GLU LEU GLU GLN SEQRES 2 E 154 PHE ALA LYS LEU LEU LYS GLN LYS ARG ILE THR LEU GLY SEQRES 3 E 154 TYR THR GLN ALA ASP VAL GLY LEU THR LEU GLY VAL LEU SEQRES 4 E 154 PHE GLY LYS VAL PHE SER GLN THR THR ILE SER ARG PHE SEQRES 5 E 154 GLU ALA LEU GLN LEU SER LEU LYS ASN MET SER LYS LEU SEQRES 6 E 154 ARG PRO LEU LEU GLU LYS TRP VAL GLU GLU ALA ASP ASN SEQRES 7 E 154 ASN GLU ASN LEU GLN GLU ILE SER LYS SER GLU THR LEU SEQRES 8 E 154 VAL GLN ALA ARG LYS ARG LYS ARG THR SER ILE GLU ASN SEQRES 9 E 154 ARG VAL ARG TRP SER LEU GLU THR MET PHE LEU LYS SER SEQRES 10 E 154 PRO LYS PRO SER LEU GLN GLN ILE THR HIS ILE ALA ASN SEQRES 11 E 154 GLN LEU GLY LEU GLU LYS ASP VAL VAL ARG VAL TRP PHE SEQRES 12 E 154 SER ASN ARG ARG GLN LYS GLY LYS ARG SER SER HELIX 1 AA1 ASN D 51 ASN D 68 1 18 HELIX 2 AA2 HIS D 72 LEU D 86 1 15 HELIX 3 AA3 SER D 88 HIS D 110 1 23 HELIX 4 AA4 ASP E 133 LEU E 155 1 23 HELIX 5 AA5 THR E 158 GLY E 171 1 14 HELIX 6 AA6 SER E 175 ALA E 184 1 10 HELIX 7 AA7 SER E 188 SER E 231 1 44 CRYST1 165.170 165.170 39.780 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006054 0.003495 0.000000 0.00000 SCALE2 0.000000 0.006991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025138 0.00000