HEADER TRANSPORT PROTEIN 09-OCT-18 6HUR TITLE 2'-FUCOSYLLACTOSE AND 3-FUCOSYLLACTOSE BINDING PROTEIN FROM TITLE 2 BIFIDOBACTERIUM LONGUM INFANTIS, BOUND WITH 2'-FUCOSYLLACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS; SOURCE 3 ORGANISM_TAXID: 1682; SOURCE 4 ATCC: ATCC 15697; SOURCE 5 GENE: BFS25_04965; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS SOLUTE BINDING PROTEIN, 2'-FUCOSYLLACTOSE, BIFIDOBACTERIUM LONGUM KEYWDS 2 INFANTIS, ABC-TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.EJBY,M.ABOU HACHEM,L.LO LEGGIO,T.KATAYAMA,M.SAKANAKA REVDAT 3 29-JUL-20 6HUR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 18-SEP-19 6HUR 1 JRNL REVDAT 1 04-SEP-19 6HUR 0 JRNL AUTH M.SAKANAKA,M.E.HANSEN,A.GOTOH,T.KATOH,K.YOSHIDA,T.ODAMAKI, JRNL AUTH 2 H.YACHI,Y.SUGIYAMA,S.KURIHARA,J.HIROSE,T.URASHIMA,J.Z.XIAO, JRNL AUTH 3 M.KITAOKA,S.FUKIYA,A.YOKOTA,L.LO LEGGIO,M.ABOU HACHEM, JRNL AUTH 4 T.KATAYAMA JRNL TITL EVOLUTIONARY ADAPTATION IN FUCOSYLLACTOSE UPTAKE SYSTEMS JRNL TITL 2 SUPPORTS BIFIDOBACTERIA-INFANT SYMBIOSIS. JRNL REF SCI ADV V. 5 W7696 2019 JRNL REFN ESSN 2375-2548 JRNL PMID 31489370 JRNL DOI 10.1126/SCIADV.AAW7696 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 98453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 26, 2018 REMARK 200 BUILT=20180126 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JAN 26, 2018 REMARK 200 BUILT=20180126 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.297 REMARK 200 RESOLUTION RANGE LOW (A) : 41.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06549 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP RATIO 1:1 PROTEIN: 100 MG/ML IN REMARK 280 10 MM MES PH 6.5 AND 150 MM NACL MOTHER LIQOUR: 0.1 M MES PH 6.5, REMARK 280 25 % PEG-500MME AND 10 MM ZNSO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.00000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.68247 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.90000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 67.00000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 38.68247 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.90000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 67.00000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 38.68247 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.90000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.36494 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.80000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 77.36494 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.80000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 77.36494 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 201 O HOH A 601 1.47 REMARK 500 C1 GAL B 2 O4 BGC A 505 1.70 REMARK 500 O HOH A 689 O HOH A 948 1.92 REMARK 500 O HOH A 642 O HOH A 869 1.94 REMARK 500 O HOH A 973 O HOH A 1034 1.96 REMARK 500 O HOH A 882 O HOH A 893 1.97 REMARK 500 O HOH A 935 O HOH A 995 1.97 REMARK 500 O HOH A 979 O HOH A 984 1.98 REMARK 500 O HOH A 947 O HOH A 1002 2.03 REMARK 500 ND2 ASN A 201 O HOH A 601 2.05 REMARK 500 O HOH A 1079 O HOH A 1090 2.11 REMARK 500 O HOH A 893 O HOH A 984 2.11 REMARK 500 O HOH A 896 O HOH A 1072 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE21 GLN A 39 O HOH A 602 5555 1.49 REMARK 500 O HOH A 680 O HOH A 925 6564 1.87 REMARK 500 O HOH A 766 O HOH A 829 8654 1.91 REMARK 500 OD2 ASP A 187 OE2 GLU A 333 1554 2.14 REMARK 500 O HOH A 861 O HOH A 936 9554 2.15 REMARK 500 O HOH A 626 O HOH A 955 6564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 323 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 60 53.50 -95.75 REMARK 500 GLN A 160 -96.85 -104.27 REMARK 500 VAL A 320 -90.03 -120.00 REMARK 500 SER A 347 -15.48 -150.58 REMARK 500 PHE A 411 55.70 -116.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1091 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 GLU A 134 OE1 97.3 REMARK 620 3 GLU A 134 OE2 98.5 4.5 REMARK 620 4 HIS A 150 NE2 93.1 4.2 6.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 510 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE1 REMARK 620 2 HOH A 656 O 81.3 REMARK 620 3 HOH A 996 O 149.1 97.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 177 NE2 REMARK 620 2 ASP A 199 OD2 123.3 REMARK 620 3 HOH A 969 O 105.2 97.4 REMARK 620 4 HOH A1009 O 106.5 110.2 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 509 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 196 NE2 REMARK 620 2 ASP A 267 OD1 85.8 REMARK 620 3 ASP A 267 OD2 86.4 4.4 REMARK 620 4 GLU A 268 OE1 91.7 7.0 5.3 REMARK 620 5 GLU A 268 OE2 87.7 8.8 4.5 6.2 REMARK 620 6 HOH A 964 O 93.5 11.1 8.0 4.6 5.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 348 OD1 REMARK 620 2 ASP A 348 OD2 53.3 REMARK 620 3 ASP A 350 OD2 152.2 111.5 REMARK 620 4 ASP A 405 OD1 36.1 27.8 118.9 REMARK 620 5 HOH A 998 O 103.8 110.2 103.6 127.6 REMARK 620 N 1 2 3 4 DBREF1 6HUR A 33 460 UNP A0A1S2VYK0_BIFLI DBREF2 6HUR A A0A1S2VYK0 33 460 SEQRES 1 A 428 LYS SER ASP VAL THR ALA GLN ASP VAL GLU ASN ALA LEU SEQRES 2 A 428 THR ASP THR SER LYS ASN VAL GLU LEU THR VAL TRP ALA SEQRES 3 A 428 TYR SER ALA LYS GLN MET GLU PRO THR VAL LYS ALA PHE SEQRES 4 A 428 GLU LYS LYS TYR PRO HIS ILE LYS ILE ASN PHE VAL ASN SEQRES 5 A 428 THR GLY ALA ALA GLU ASP HIS PHE THR LYS PHE GLN ASN SEQRES 6 A 428 VAL VAL GLN ALA GLN LYS ASP ILE PRO ASP VAL VAL GLN SEQRES 7 A 428 MET SER ALA ASN LYS PHE GLN GLN PHE ALA VAL SER GLY SEQRES 8 A 428 ALA LEU LEU ASN PHE ALA ASN ASP SER ILE GLU LYS ALA SEQRES 9 A 428 TRP SER LYS LEU TYR THR LYS THR ALA TRP ALA GLN VAL SEQRES 10 A 428 HIS TYR ALA GLY GLY LEU TYR GLY ALA PRO GLN ASP ALA SEQRES 11 A 428 THR PRO LEU ALA ASN TYR VAL ARG LYS ASP ILE LEU ASP SEQRES 12 A 428 GLU HIS ASN LEU GLN VAL PRO GLU SER TRP GLU ASP ILE SEQRES 13 A 428 TYR ASN GLU GLY ILE LYS LEU HIS LYS GLU ASP SER ASN SEQRES 14 A 428 LYS TYR MET GLY ILE LEU GLY SER ASP ILE SER PHE PHE SEQRES 15 A 428 THR ASN LEU TYR ARG SER VAL GLY ALA ARG LEU TRP LYS SEQRES 16 A 428 VAL ASN SER VAL ASP ASP VAL GLU LEU THR MET ASN SER SEQRES 17 A 428 GLY LYS ALA LYS GLU PHE THR GLU PHE LEU GLN LYS CYS SEQRES 18 A 428 LEU LYS ASP GLY VAL LEU GLU GLY GLY THR VAL PHE THR SEQRES 19 A 428 ASP GLU PHE ASN ARG SER ILE ASN ASP GLY ARG TYR ALA SEQRES 20 A 428 THR PHE ILE ASN GLU ASN TRP MET GLY ASN THR TYR LYS SEQRES 21 A 428 GLU GLN ASN PRO SER LEU LYS GLY LYS MET VAL VAL ALA SEQRES 22 A 428 ALA PRO PRO SER TRP LYS GLY GLN PRO TYR GLN SER SER SEQRES 23 A 428 SER VAL GLY SER MET MET SER VAL SER ALA ALA CYS PRO SEQRES 24 A 428 LYS GLU LYS GLN ALA ALA ALA LEU ALA PHE ILE ASN TRP SEQRES 25 A 428 LEU ASP SER ASP LYS ASP ALA ILE GLN SER TRP GLN ASP SEQRES 26 A 428 THR ASN ASN GLY ASN PHE PHE MET ALA ALA SER VAL TYR SEQRES 27 A 428 GLN ASP ASP GLU ASN GLN ARG ASN LYS LYS GLU THR ASP SEQRES 28 A 428 GLY TYR TYR ALA ASN ASP ASP VAL ASN ALA VAL TYR PHE SEQRES 29 A 428 ASP SER MET ASP LYS VAL ASN THR ASP TRP GLU TYR LEU SEQRES 30 A 428 PRO PHE MET SER GLN VAL GLU VAL VAL PHE ASN ASP VAL SEQRES 31 A 428 ILE VAL PRO GLU MET ASN GLU ASN GLY ASP LEU VAL GLY SEQRES 32 A 428 ALA MET ALA LYS ALA GLN GLN LYS LEU LYS ALA TYR ALA SEQRES 33 A 428 GLU ASP ASN GLY PHE LYS VAL THR THR ASP ALA ASP HET GLC B 1 24 HET GAL B 2 22 HET FUC B 3 21 HET PG0 A 501 19 HET BGC A 505 24 HET ZN A 506 1 HET ZN A 507 1 HET ZN A 508 1 HET ZN A 509 1 HET ZN A 510 1 HET MES A 511 25 HET MES A 512 25 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN PG0 PEG 6000 FORMUL 2 GLC C6 H12 O6 FORMUL 2 GAL C6 H12 O6 FORMUL 2 FUC C6 H12 O5 FORMUL 3 PG0 C5 H12 O3 FORMUL 4 BGC C6 H12 O6 FORMUL 5 ZN 5(ZN 2+) FORMUL 10 MES 2(C6 H13 N O4 S) FORMUL 12 HOH *491(H2 O) HELIX 1 AA1 THR A 37 ASP A 47 1 11 HELIX 2 AA2 SER A 60 TYR A 75 1 16 HELIX 3 AA3 ALA A 87 GLN A 102 1 16 HELIX 4 AA4 PHE A 116 SER A 122 1 7 HELIX 5 AA5 ASN A 130 SER A 138 1 9 HELIX 6 AA6 THR A 142 VAL A 149 1 8 HELIX 7 AA7 LYS A 171 HIS A 177 1 7 HELIX 8 AA8 SER A 184 ASP A 199 1 16 HELIX 9 AA9 ASP A 210 VAL A 221 1 12 HELIX 10 AB1 SER A 240 ASP A 256 1 17 HELIX 11 AB2 THR A 266 GLY A 276 1 11 HELIX 12 AB3 TRP A 286 ASN A 295 1 10 HELIX 13 AB4 PRO A 296 LYS A 299 5 4 HELIX 14 AB5 PRO A 331 GLU A 333 5 3 HELIX 15 AB6 LYS A 334 ASP A 348 1 15 HELIX 16 AB7 ASP A 348 THR A 358 1 11 HELIX 17 AB8 ALA A 367 ASP A 372 1 6 HELIX 18 AB9 ASP A 373 ASN A 378 1 6 HELIX 19 AC1 ASP A 390 LYS A 401 1 12 HELIX 20 AC2 PHE A 411 ILE A 423 1 13 HELIX 21 AC3 VAL A 424 MET A 427 5 4 HELIX 22 AC4 ASP A 432 ASN A 451 1 20 SHEET 1 AA1 5 ILE A 78 ASN A 84 0 SHEET 2 AA1 5 VAL A 52 ALA A 58 1 N VAL A 56 O VAL A 83 SHEET 3 AA1 5 VAL A 108 SER A 112 1 O VAL A 108 N TRP A 57 SHEET 4 AA1 5 SER A 322 VAL A 326 -1 O MET A 323 N MET A 111 SHEET 5 AA1 5 ALA A 158 PRO A 159 -1 N ALA A 158 O MET A 324 SHEET 1 AA2 2 HIS A 150 TYR A 151 0 SHEET 2 AA2 2 GLY A 154 LEU A 155 -1 O GLY A 154 N TYR A 151 SHEET 1 AA3 3 THR A 280 GLU A 284 0 SHEET 2 AA3 3 LEU A 165 ARG A 170 -1 N TYR A 168 O PHE A 281 SHEET 3 AA3 3 MET A 302 ALA A 305 -1 O ALA A 305 N ASN A 167 SHEET 1 AA4 2 GLY A 205 GLY A 208 0 SHEET 2 AA4 2 LEU A 259 GLY A 262 1 O GLU A 260 N LEU A 207 SHEET 1 AA5 3 TRP A 226 SER A 230 0 SHEET 2 AA5 3 ASP A 233 LEU A 236 -1 O GLU A 235 N LYS A 227 SHEET 3 AA5 3 LYS A 454 THR A 457 1 O THR A 456 N LEU A 236 LINK O4 AGLC B 1 C1 GAL B 2 1555 1555 1.42 LINK O2 GAL B 2 C1 FUC B 3 1555 1555 1.42 LINK OD1 ASP A 47 ZN ZN A 506 1555 5555 2.00 LINK OE1 GLU A 53 ZN ZN A 510 1555 1555 2.00 LINK OE1 GLU A 134 ZN ZN A 506 1555 1555 2.00 LINK OE2 GLU A 134 ZN ZN A 506 1555 1555 2.04 LINK NE2 HIS A 150 ZN ZN A 506 1555 1555 2.09 LINK NE2 HIS A 177 ZN ZN A 508 1555 1555 2.02 LINK NE2 HIS A 196 ZN ZN A 509 1555 8654 2.02 LINK OD2 ASP A 199 ZN ZN A 508 1555 1555 2.09 LINK OD1 ASP A 267 ZN ZN A 509 1555 1555 2.40 LINK OD2 ASP A 267 ZN ZN A 509 1555 1555 2.00 LINK OE1 GLU A 268 ZN ZN A 509 1555 1555 1.98 LINK OE2 GLU A 268 ZN ZN A 509 1555 1555 2.60 LINK OD1 ASP A 348 ZN ZN A 507 1555 1555 2.58 LINK OD2 ASP A 348 ZN ZN A 507 1555 1555 1.97 LINK OD2 ASP A 350 ZN ZN A 507 1555 1555 2.00 LINK OD1 ASP A 405 ZN ZN A 507 1555 9554 1.94 LINK ZN ZN A 507 O HOH A 998 1555 1555 2.19 LINK ZN ZN A 508 O HOH A 969 1555 1555 2.00 LINK ZN ZN A 508 O HOH A1009 1555 1555 2.23 LINK ZN ZN A 509 O HOH A 964 1555 1555 2.02 LINK ZN ZN A 510 O HOH A 656 1555 1555 2.08 LINK ZN ZN A 510 O HOH A 996 1555 1555 2.63 CRYST1 134.000 134.000 59.700 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007463 0.004309 0.000000 0.00000 SCALE2 0.000000 0.008617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016750 0.00000