HEADER OXIDOREDUCTASE 09-OCT-18 6HUZ TITLE HMDII FROM DESULFUROBACTERIUM THERMOLITHOTROPHUM RECONSTITUTED WITH TITLE 2 FE-GUANYLYLPYRIDINOL (FEGP) COFACTOR AND CO-CRYSTALLIZED WITH TITLE 3 METHENYL-TETRAHYDROFOLATE FORM B COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME F420-DEPENDENT N(5),N(10)- COMPND 3 METHENYLTETRAHYDROMETHANOPTERIN REDUCTASE-RELATED PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THE POLY-HISTIDINE TAG IS ATTACHED ON THE C-TERMINAL. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFUROBACTERIUM THERMOLITHOTROPHUM DSM SOURCE 3 11699; SOURCE 4 ORGANISM_TAXID: 868864; SOURCE 5 CELL_LINE: /; SOURCE 6 ATCC: /; SOURCE 7 ORGAN: /; SOURCE 8 TISSUE: /; SOURCE 9 CELL: /; SOURCE 10 GENE: DESTER_1504; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_ATCC_NUMBER: /; SOURCE 14 EXPRESSION_SYSTEM_ORGAN: /; SOURCE 15 EXPRESSION_SYSTEM_TISSUE: /; SOURCE 16 EXPRESSION_SYSTEM_CELL: /; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET-24B(+) KEYWDS HYDROGENASE, H2-ACTIVATION, LATERAL GENE-TRANSFER, COFACTOR KEYWDS 2 BIOSYNTHESIS, TETRAHYDROMETHANOPTERIN, TETRAHYDROFOLATE, PARALOG, KEYWDS 3 SULFUR-REDUCING BACTERIA, METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.WATANABE,T.WAGNER,G.HUANG,J.KAHNT,K.ATAKA,U.ERMLER,S.SHIMA REVDAT 4 24-JAN-24 6HUZ 1 LINK REVDAT 3 13-MAR-19 6HUZ 1 JRNL REVDAT 2 06-FEB-19 6HUZ 1 JRNL REVDAT 1 09-JAN-19 6HUZ 0 JRNL AUTH T.WATANABE,T.WAGNER,G.HUANG,J.KAHNT,K.ATAKA,U.ERMLER,S.SHIMA JRNL TITL THE BACTERIAL [FE]-HYDROGENASE PARALOG HMDII USES JRNL TITL 2 TETRAHYDROFOLATE DERIVATIVES AS SUBSTRATES. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 58 3506 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30600878 JRNL DOI 10.1002/ANIE.201813465 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 36480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.39 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2862 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3032 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2717 REMARK 3 BIN R VALUE (WORKING SET) : 0.3009 REMARK 3 BIN FREE R VALUE : 0.3479 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32910 REMARK 3 B22 (A**2) : -0.45710 REMARK 3 B33 (A**2) : 1.78630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.139 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.125 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.182 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.121 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5791 ; 5.000 ; HARMONIC REMARK 3 BOND ANGLES : 10552 ; 5.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1331 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 864 ; 30.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5791 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 396 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6579 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.75 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.23 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -31.3793 15.6653 14.6374 REMARK 3 T TENSOR REMARK 3 T11: 0.0127 T22: -0.1382 REMARK 3 T33: 0.2470 T12: -0.0018 REMARK 3 T13: -0.0368 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 1.4679 L22: 1.3605 REMARK 3 L33: 0.2690 L12: 0.2294 REMARK 3 L13: -0.0755 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: -0.1623 S13: 0.4523 REMARK 3 S21: -0.0848 S22: 0.0732 S23: 0.0635 REMARK 3 S31: -0.0149 S32: -0.0215 S33: 0.0082 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE C-TERMINAL HELIX 335-347 MIGHT BE REMARK 3 IN TWO DIFFERENT POSITION AND ONLY THE ONE WITH THE HIGHEST REMARK 3 OCCUPANCY HAS BEEN MODELLED. THE FINAL PART 350-356 HAS BEEN REMARK 3 TRACED TO FIT AN EXTRA ELECTRON DENSITY, HOWEVER IT IS NOT REMARK 3 EXCLUDED THAT THIS DENSITY CORRESPONDS TO POLYETHYLENE GLYCOL. REMARK 3 THE HYDROGENS HAVE BEEN ADDED IN RIDING POSITION FOR THE LAST REMARK 3 REFINEMENT CYCLE AND HAVE BEEN OMITTED IN THE DEPOSITED MODEL. REMARK 4 REMARK 4 6HUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200011467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 49.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.21200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 6HUY REMARK 200 REMARK 200 REMARK: TRANSPARENT TRIANGULAR SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HMDII FROM DESULFUROBACTERIUM REMARK 280 THERMOLITHOTROPHUM WAS RECONSTITUTED WITH THE FE- REMARK 280 GUANYLYLPYRIDINOL COFACTOR FROM METHANOTHERMOBACTER MARBURGENSIS REMARK 280 AND CO-CRYSTALLIZED WITH METHENYL-TETRAHYDROFOLATE USING THE REMARK 280 SITTING DROP VAPOR DIFFUSION METHOD UNDER N2/H2 (95%/5%) IN RED REMARK 280 LIGHT CONDITION. THE RECONSTITUTED HOLOENZYME WAS MIXED WITH REMARK 280 METHENYL-H4F+ AT THE FINAL CONCENTRATIONS OF 1.6 MM. METHENYL- REMARK 280 TETRAHYDROFOLATE WAS DISSOLVED IN 10% DMSO, AND THE FINAL REMARK 280 CONCENTRATION OF DMSO IN THE PROTEIN SOLUTION WAS 1.6%. 0.7 UL REMARK 280 OF DHMDII AT 21 MG/ML (RECONSTITUTED WITH FEGP AND METHENYL-H4F+) REMARK 280 WAS SPOTTED ON A 96-WELL 2-DROP MRC CRYSTALLIZATION PLATES REMARK 280 (MOLECULAR DIMENSIONS, SUFFOLK, UK) AND 0.7 UL OF RESERVOIR REMARK 280 SOLUTION WAS MIXED. AFTER ONE MONTH, CRYSTALS APPEARED IN 20% REMARK 280 PEG 3000 (W/V) AND 100 MM SODIUM CITRATE PH 5.5 (FROM THE KIT REMARK 280 WIZARD, JENA BIOSCIENCE). THE CRYSTALS WERE CRYOPROTECTED BY A REMARK 280 SOAK OF FEW SECONDS IN 20% PEG 3000 (W/V), 100 MM TRI-SODIUM REMARK 280 CITRATE PH 5.5 AND 20% GLYCEROL BEFORE A FLASH FREEZE IN LIQUID REMARK 280 NITROGEN, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -194.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -65.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 348 REMARK 465 GLU A 349 REMARK 465 GLU A 357 REMARK 465 LYS A 358 REMARK 465 LEU A 359 REMARK 465 ALA A 360 REMARK 465 ALA A 361 REMARK 465 ALA A 362 REMARK 465 LEU A 363 REMARK 465 GLU A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 88 58.12 -94.93 REMARK 500 ARG A 92 138.31 -35.48 REMARK 500 THR A 116 -156.17 -118.94 REMARK 500 ARG A 137 40.81 -97.94 REMARK 500 SER A 143 -155.31 -156.85 REMARK 500 ALA A 149 172.54 171.74 REMARK 500 LEU A 166 -0.94 76.11 REMARK 500 ASN A 263 101.75 75.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE9 A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 117 SG REMARK 620 2 FE9 A 401 N1 84.3 REMARK 620 3 FE9 A 401 C1F 169.2 89.9 REMARK 620 4 FE9 A 401 C8 74.7 83.6 95.6 REMARK 620 5 FE9 A 401 C2F 96.5 176.0 88.7 92.8 REMARK 620 6 HOH A 509 O 82.4 91.3 106.9 156.9 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 236 OE1 REMARK 620 2 GLU A 236 OE2 43.6 REMARK 620 3 GLU A 256 OE1 28.7 44.7 REMARK 620 4 LYS A 356 O 32.0 51.7 7.1 REMARK 620 5 HOH A 742 O 35.3 48.4 6.8 6.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 238 O REMARK 620 2 GLN A 238 OE1 98.6 REMARK 620 3 SER A 242 OG 65.8 119.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE9 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GUE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 408 DBREF 6HUZ A 1 357 UNP F0S2B6 F0S2B6_DESTD 1 357 SEQADV 6HUZ LYS A 358 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ LEU A 359 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ ALA A 360 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ ALA A 361 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ ALA A 362 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ LEU A 363 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ GLU A 364 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ HIS A 365 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ HIS A 366 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ HIS A 367 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ HIS A 368 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ HIS A 369 UNP F0S2B6 EXPRESSION TAG SEQADV 6HUZ HIS A 370 UNP F0S2B6 EXPRESSION TAG SEQRES 1 A 370 MET ARG VAL THR VAL TYR GLY PHE GLY SER LEU ASN TYR SEQRES 2 A 370 TYR SER ASN LYS LEU ASN VAL PRO GLU LYS LEU GLY GLY SEQRES 3 A 370 GLU PRO PRO TYR GLY GLY SER ALA MET ALA VAL GLU PHE SEQRES 4 A 370 ALA LYS ALA GLY HIS ASP VAL THR LEU SER ASP PRO ASN SEQRES 5 A 370 ILE ASP LYS VAL PRO ASP GLU ILE ARG LYS LYS VAL GLU SEQRES 6 A 370 ASP ALA GLY VAL LYS LEU THR THR ASP ASP ILE GLU ALA SEQRES 7 A 370 ALA LYS GLU ALA GLU VAL ALA ILE LEU PHE THR PRO PHE SEQRES 8 A 370 ARG GLY GLY VAL THR PHE LYS ILE ALA GLU THR ILE LEU SEQRES 9 A 370 PRO TYR LEU VAL GLU ASN ALA VAL ILE CYS THR THR CYS SEQRES 10 A 370 THR MET SER ILE LEU VAL LEU ASN SER TYR LEU GLN ASN SEQRES 11 A 370 ALA ILE PHE LEU GLU GLY ARG GLU ASP ILE GLY PHE SER SEQRES 12 A 370 THR MET HIS PRO ALA ALA ILE PRO GLY THR PRO GLN HIS SEQRES 13 A 370 LYS HIS TYR LEU ILE ALA THR ASN GLU LEU LEU ARG LYS SEQRES 14 A 370 PRO ILE VAL THR GLU GLU GLN ILE GLU LYS LEU LYS LYS SEQRES 15 A 370 LEU ALA THR ASP THR GLY LYS GLU ALA TYR LEU LEU PRO SEQRES 16 A 370 ALA GLU LEU VAL SER PRO VAL GLY ASP MET GLY ILE VAL SEQRES 17 A 370 THR THR ALA ILE ALA PHE ALA GLY ALA ILE GLU TYR TYR SEQRES 18 A 370 LYS VAL SER ARG ASP ILE LEU LYS THR LYS ARG SER MET SEQRES 19 A 370 THR GLU PHE GLN ILE ALA GLN SER LEU GLN VAL ILE SER SEQRES 20 A 370 SER LEU VAL THR LYS TYR GLY LEU GLU GLY LEU ILE LYS SEQRES 21 A 370 LEU LEU ASN VAL ASP ALA MET LYS ALA SER LEU GLN SER SEQRES 22 A 370 MET ILE LEU ASP LYS ASN GLU GLN PRO LEU THR VAL THR SEQRES 23 A 370 ALA SER LYS LEU LEU GLU LYS ILE GLU GLU THR ILE PRO SEQRES 24 A 370 GLU LEU ILE LYS GLU ALA GLU ASN PHE SER PRO SER GLU SEQRES 25 A 370 PRO THR TYR THR SER ALA PRO SER PRO MET LEU VAL GLU SEQRES 26 A 370 HIS MET GLU ASP LEU VAL GLY ASP ASP VAL LEU LYS GLY SEQRES 27 A 370 ILE LEU ARG GLU SER TRP LYS LYS PHE TYR GLU ASN VAL SEQRES 28 A 370 SER GLU ARG ASN LYS GLU LYS LEU ALA ALA ALA LEU GLU SEQRES 29 A 370 HIS HIS HIS HIS HIS HIS HET FE9 A 401 41 HET GUE A 402 33 HET GOL A 403 6 HET GOL A 404 6 HET EDO A 405 4 HET NA A 406 1 HET NA A 407 1 HET NA A 408 1 HETNAM FE9 IRON-GUANYLYL PYRIDINOL COFACTOR HETNAM GUE 5,10-METHENYLTETRAHYDROFOLATE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FE9 C21 H23 FE N6 O13 P S 4+ FORMUL 3 GUE C20 H22 N7 O6 1+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 EDO C2 H6 O2 FORMUL 7 NA 3(NA 1+) FORMUL 10 HOH *281(H2 O) HELIX 1 AA1 SER A 10 ASN A 16 1 7 HELIX 2 AA2 ASN A 19 LEU A 24 1 6 HELIX 3 AA3 GLY A 31 ALA A 42 1 12 HELIX 4 AA4 ASN A 52 VAL A 56 5 5 HELIX 5 AA5 PRO A 57 ALA A 67 1 11 HELIX 6 AA6 ASP A 74 LYS A 80 1 7 HELIX 7 AA7 GLY A 94 LEU A 104 1 11 HELIX 8 AA8 SER A 120 LEU A 128 1 9 HELIX 9 AA9 LEU A 128 GLY A 136 1 9 HELIX 10 AB1 THR A 173 THR A 187 1 15 HELIX 11 AB2 LEU A 198 ASP A 204 1 7 HELIX 12 AB3 GLY A 206 ILE A 227 1 22 HELIX 13 AB4 LYS A 231 ASN A 263 1 33 HELIX 14 AB5 ASN A 263 GLN A 272 1 10 HELIX 15 AB6 SER A 273 ILE A 275 5 3 HELIX 16 AB7 ASP A 277 GLU A 280 5 4 HELIX 17 AB8 GLN A 281 LYS A 293 1 13 HELIX 18 AB9 LYS A 293 ILE A 298 1 6 HELIX 19 AC1 ILE A 298 ASN A 307 1 10 HELIX 20 AC2 PRO A 319 GLY A 332 1 14 HELIX 21 AC3 GLY A 332 LYS A 346 1 15 SHEET 1 AA1 6 LYS A 70 THR A 72 0 SHEET 2 AA1 6 ASP A 45 SER A 49 1 N LEU A 48 O LYS A 70 SHEET 3 AA1 6 ARG A 2 TYR A 6 1 N VAL A 5 O THR A 47 SHEET 4 AA1 6 VAL A 84 LEU A 87 1 O ILE A 86 N TYR A 6 SHEET 5 AA1 6 VAL A 112 THR A 115 1 O CYS A 114 N LEU A 87 SHEET 6 AA1 6 GLY A 141 THR A 144 1 O GLY A 141 N ILE A 113 SHEET 1 AA2 2 HIS A 158 THR A 163 0 SHEET 2 AA2 2 GLU A 190 PRO A 195 1 O TYR A 192 N TYR A 159 LINK SG CYS A 117 FE FE9 A 401 1555 1555 2.49 LINK OE1 GLU A 236 NA NA A 408 1555 2455 2.97 LINK OE2 GLU A 236 NA NA A 408 1555 2455 2.98 LINK O GLN A 238 NA NA A 407 1555 1555 2.89 LINK OE1 GLN A 238 NA NA A 407 1555 1555 2.97 LINK OG SER A 242 NA NA A 407 1555 1555 2.84 LINK OE1 GLU A 256 NA NA A 408 1555 1555 2.99 LINK O LYS A 356 NA NA A 408 1555 1555 2.93 LINK FE FE9 A 401 O HOH A 509 1555 1555 2.25 LINK NA NA A 408 O HOH A 742 1555 1555 2.75 CISPEP 1 PRO A 28 PRO A 29 0 3.43 SITE 1 AC1 33 TYR A 6 PHE A 8 GLY A 9 SER A 10 SITE 2 AC1 33 TYR A 14 SER A 49 ASP A 50 PRO A 51 SITE 3 AC1 33 ASN A 52 ASP A 75 PHE A 88 THR A 89 SITE 4 AC1 33 PRO A 90 VAL A 95 LYS A 98 ILE A 99 SITE 5 AC1 33 THR A 116 CYS A 117 THR A 118 HIS A 146 SITE 6 AC1 33 PRO A 147 ALA A 148 ALA A 149 ILE A 150 SITE 7 AC1 33 PRO A 151 GUE A 402 GOL A 404 HOH A 509 SITE 8 AC1 33 HOH A 524 HOH A 565 HOH A 580 HOH A 609 SITE 9 AC1 33 HOH A 628 SITE 1 AC2 22 TYR A 13 LYS A 17 PHE A 91 ALA A 148 SITE 2 AC2 22 GLY A 203 ASP A 204 MET A 205 LYS A 229 SITE 3 AC2 22 THR A 230 MET A 234 SER A 270 SER A 273 SITE 4 AC2 22 MET A 274 FE9 A 401 HOH A 509 HOH A 524 SITE 5 AC2 22 HOH A 541 HOH A 552 HOH A 579 HOH A 580 SITE 6 AC2 22 HOH A 591 HOH A 685 SITE 1 AC3 8 GLU A 138 ILE A 140 GLY A 141 PRO A 170 SITE 2 AC3 8 ILE A 171 VAL A 172 GLN A 176 HOH A 513 SITE 1 AC4 8 PHE A 8 GLY A 9 LEU A 11 ASP A 50 SITE 2 AC4 8 ASN A 52 VAL A 56 FE9 A 401 HOH A 522 SITE 1 AC5 6 GLU A 178 LYS A 181 LYS A 182 THR A 185 SITE 2 AC5 6 HOH A 561 HOH A 623 SITE 1 AC6 2 MET A 322 GLU A 325 SITE 1 AC7 4 PRO A 201 GLN A 238 GLN A 241 SER A 242 SITE 1 AC8 6 ARG A 232 GLU A 236 GLY A 254 GLU A 256 SITE 2 AC8 6 LYS A 356 HOH A 742 CRYST1 65.200 132.020 49.160 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020342 0.00000