HEADER METAL BINDING PROTEIN 10-OCT-18 6HV2 TITLE MMP-13 IN COMPLEX WITH THE PEPTIDE IMISF COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MATRIX METALLOPROTEINASE-13,MMP-13; COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COLLAGENASE 3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: MATRIX METALLOPROTEINASE-13,MMP-13; COMPND 11 EC: 3.4.24.-; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: AUTO-PROTEOLYTIC FRAGMENT OF MMP-13 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MMP13; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDASE, MATRIX METALLO PROTEASE, SELF-DEGRADATION, MMP, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.MITTL,R.RIEDL,D.HOHL REVDAT 5 24-JAN-24 6HV2 1 LINK REVDAT 4 22-APR-20 6HV2 1 REMARK REVDAT 3 20-MAR-19 6HV2 1 JRNL REVDAT 2 13-FEB-19 6HV2 1 JRNL REVDAT 1 30-JAN-19 6HV2 0 JRNL AUTH F.M.GALL,D.HOHL,D.FRASSON,T.WERMELINGER,P.R.E.MITTL, JRNL AUTH 2 M.SIEVERS,R.RIEDL JRNL TITL DRUG DESIGN INSPIRED BY NATURE: CRYSTALLOGRAPHIC DETECTION JRNL TITL 2 OF AN AUTO-TAILORED PROTEASE INHIBITOR TEMPLATE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 4051 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30615822 JRNL DOI 10.1002/ANIE.201812348 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6959 - 4.1174 1.00 2612 148 0.1493 0.2070 REMARK 3 2 4.1174 - 3.2688 1.00 2589 140 0.1536 0.2136 REMARK 3 3 3.2688 - 2.8558 1.00 2628 137 0.1775 0.2216 REMARK 3 4 2.8558 - 2.5948 1.00 2594 140 0.2013 0.2465 REMARK 3 5 2.5948 - 2.4089 1.00 2616 137 0.2587 0.2965 REMARK 3 6 2.4089 - 2.2669 1.00 2583 140 0.3067 0.3903 REMARK 3 7 2.2669 - 2.1534 1.00 2581 142 0.3110 0.3363 REMARK 3 8 2.1534 - 2.0596 1.00 2599 136 0.3156 0.3513 REMARK 3 9 2.0596 - 1.9803 1.00 2614 131 0.3178 0.3685 REMARK 3 10 1.9803 - 1.9120 1.00 2603 141 0.3281 0.3746 REMARK 3 11 1.9120 - 1.8522 1.00 2614 141 0.3613 0.3736 REMARK 3 12 1.8522 - 1.7993 1.00 2618 135 0.3886 0.4743 REMARK 3 13 1.7993 - 1.7519 1.00 2584 138 0.4144 0.4216 REMARK 3 14 1.7519 - 1.7092 0.97 2533 136 0.4462 0.4492 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1435 REMARK 3 ANGLE : 0.649 1948 REMARK 3 CHIRALITY : 0.045 196 REMARK 3 PLANARITY : 0.005 252 REMARK 3 DIHEDRAL : 12.461 820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 32.5920 -6.6922 16.4356 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.4003 REMARK 3 T33: 0.2619 T12: 0.0056 REMARK 3 T13: 0.0473 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.9570 L22: 3.0523 REMARK 3 L33: 3.8039 L12: -0.7550 REMARK 3 L13: 0.7046 L23: -0.5954 REMARK 3 S TENSOR REMARK 3 S11: -0.1982 S12: -0.2247 S13: 0.0522 REMARK 3 S21: 0.3403 S22: 0.3091 S23: 0.2314 REMARK 3 S31: -0.4281 S32: -0.5188 S33: -0.0747 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 - 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAY 1, 2016 REMARK 200 BUILT=20160617 REMARK 200 DATA SCALING SOFTWARE : XDS VERSION MAY 1, 2016 REMARK 200 BUILT=20160617 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.709 REMARK 200 RESOLUTION RANGE LOW (A) : 34.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 37.30 REMARK 200 R MERGE (I) : 0.21060 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 36.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP VERS 11.4.06 REMARK 200 STARTING MODEL: 2OW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM GLYCINE, 20% PEG4000, 1 M REMARK 280 AMMONIUM FORMATE, PH 9.4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.52100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.04200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.78150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 111.30250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.26050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.52100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 89.04200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 111.30250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.78150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.26050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 107 REMARK 465 PRO A 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 103 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 170 -131.49 53.21 REMARK 500 TYR A 176 76.31 -112.70 REMARK 500 SER A 182 -161.62 63.63 REMARK 500 ASN A 194 -114.57 56.80 REMARK 500 SER A 210 -117.85 -124.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 ASP A 128 OD2 47.1 REMARK 620 3 ASP A 203 O 157.5 145.2 REMARK 620 4 ASP A 203 OD1 105.3 93.4 62.2 REMARK 620 5 GLU A 205 O 115.6 72.3 85.6 96.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 162 O REMARK 620 2 ASN A 194 O 172.8 REMARK 620 3 GLY A 196 O 89.5 97.6 REMARK 620 4 ASP A 198 OD1 90.6 89.9 95.2 REMARK 620 5 HOH A 421 O 92.6 80.2 168.3 96.3 REMARK 620 6 HOH A 431 O 85.6 94.3 81.4 174.9 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 ASP A 174 OD2 111.9 REMARK 620 3 HIS A 187 NE2 117.0 110.9 REMARK 620 4 HIS A 200 ND1 107.1 94.3 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD1 REMARK 620 2 GLY A 180 O 99.3 REMARK 620 3 SER A 182 O 83.7 90.6 REMARK 620 4 LEU A 184 O 91.2 169.5 90.3 REMARK 620 5 ASP A 202 OD2 105.5 81.1 168.4 96.5 REMARK 620 6 GLU A 205 OE2 162.5 81.4 78.8 88.5 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HIS A 226 NE2 96.6 REMARK 620 3 HIS A 232 NE2 125.0 90.3 REMARK 620 4 ILE B 163 N 108.4 93.4 125.6 REMARK 620 5 ILE B 163 O 82.2 174.1 95.1 81.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 DBREF 6HV2 A 103 270 UNP P45452 MMP13_HUMAN 103 270 DBREF 6HV2 B 163 167 UNP P45452 MMP13_HUMAN 163 167 SEQRES 1 A 168 GLU TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS SEQRES 2 A 168 MET ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP SEQRES 3 A 168 MET THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA SEQRES 4 A 168 PHE LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR SEQRES 5 A 168 ARG LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE SEQRES 6 A 168 GLY ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY SEQRES 7 A 168 PRO SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO SEQRES 8 A 168 ASN TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR SEQRES 9 A 168 TRP THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL SEQRES 10 A 168 ALA ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SEQRES 11 A 168 SER LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR SEQRES 12 A 168 TYR THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP SEQRES 13 A 168 VAL GLN GLY ILE GLN SER LEU TYR GLY PRO GLY ASP SEQRES 1 B 5 ILE MET ILE SER PHE HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET GOL A 306 6 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CA 3(CA 2+) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *77(H2 O) HELIX 1 AA1 THR A 130 ASP A 147 1 18 HELIX 2 AA2 LEU A 216 LEU A 228 1 13 HELIX 3 AA3 PRO A 255 GLY A 267 1 13 SHEET 1 AA1 6 ASN A 152 LEU A 156 0 SHEET 2 AA1 6 ASN A 117 ILE A 122 1 N TYR A 120 O LEU A 156 SHEET 3 AA1 6 ILE A 163 GLY A 168 1 O ILE A 165 N ARG A 121 SHEET 4 AA1 6 ALA A 199 ASP A 202 1 O PHE A 201 N GLY A 168 SHEET 5 AA1 6 LEU A 184 ALA A 188 -1 N HIS A 187 O HIS A 200 SHEET 6 AA1 6 MET B 164 ILE B 165 -1 O MET B 164 N LEU A 185 SHEET 1 AA2 2 TRP A 207 THR A 208 0 SHEET 2 AA2 2 TYR A 214 ASN A 215 1 O TYR A 214 N THR A 208 LINK OD1 ASP A 128 CA CA A 305 1555 1555 2.93 LINK OD2 ASP A 128 CA CA A 305 1555 1555 2.47 LINK O ASP A 162 CA CA A 304 1555 1555 2.47 LINK NE2 HIS A 172 ZN ZN A 302 1555 1555 2.00 LINK OD2 ASP A 174 ZN ZN A 302 1555 1555 2.02 LINK OD1 ASP A 179 CA CA A 303 1555 1555 2.50 LINK O GLY A 180 CA CA A 303 1555 1555 2.27 LINK O SER A 182 CA CA A 303 1555 1555 2.35 LINK O LEU A 184 CA CA A 303 1555 1555 2.32 LINK NE2 HIS A 187 ZN ZN A 302 1555 1555 2.16 LINK O ASN A 194 CA CA A 304 1555 1555 2.33 LINK O GLY A 196 CA CA A 304 1555 1555 2.28 LINK OD1 ASP A 198 CA CA A 304 1555 1555 2.51 LINK ND1 HIS A 200 ZN ZN A 302 1555 1555 2.09 LINK OD2 ASP A 202 CA CA A 303 1555 1555 2.29 LINK O ASP A 203 CA CA A 305 1555 1555 2.56 LINK OD1 ASP A 203 CA CA A 305 1555 1555 3.07 LINK OE2 GLU A 205 CA CA A 303 1555 1555 2.35 LINK O GLU A 205 CA CA A 305 1555 1555 2.50 LINK NE2 HIS A 222 ZN ZN A 301 1555 1555 2.04 LINK NE2 HIS A 226 ZN ZN A 301 1555 1555 2.17 LINK NE2 HIS A 232 ZN ZN A 301 1555 1555 1.99 LINK ZN ZN A 301 N ILE B 163 1555 1555 2.11 LINK ZN ZN A 301 O ILE B 163 1555 1555 2.27 LINK CA CA A 304 O HOH A 421 1555 1555 2.39 LINK CA CA A 304 O HOH A 431 1555 1555 2.26 SITE 1 AC1 4 HIS A 222 HIS A 226 HIS A 232 ILE B 163 SITE 1 AC2 4 HIS A 172 ASP A 174 HIS A 187 HIS A 200 SITE 1 AC3 6 ASP A 179 GLY A 180 SER A 182 LEU A 184 SITE 2 AC3 6 ASP A 202 GLU A 205 SITE 1 AC4 7 TYR A 104 ASP A 162 ASN A 194 GLY A 196 SITE 2 AC4 7 ASP A 198 HOH A 421 HOH A 431 SITE 1 AC5 3 ASP A 128 ASP A 203 GLU A 205 SITE 1 AC6 6 ALA A 188 HIS A 226 HIS A 232 LYS A 234 SITE 2 AC6 6 HOH A 472 ILE B 163 CRYST1 68.928 68.928 133.563 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014508 0.008376 0.000000 0.00000 SCALE2 0.000000 0.016752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007487 0.00000