HEADER HYDROLASE 22-OCT-18 6HYY TITLE HUMAN PHOSPHOSERINE PHOSPHATASE WITH SERINE AND PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PSPASE,L-3-PHOSPHOSERINE PHOSPHATASE,O-PHOSPHOSERINE COMPND 5 PHOSPHOHYDROLASE; COMPND 6 EC: 3.1.3.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS HUMAN PHOSPHOSERINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WOUTERS,M.HAUFROID,M.MIRGAUX REVDAT 3 24-JAN-24 6HYY 1 LINK REVDAT 2 26-JUN-19 6HYY 1 JRNL REVDAT 1 12-JUN-19 6HYY 0 JRNL AUTH M.HAUFROID,M.MIRGAUX,L.LEHERTE,J.WOUTERS JRNL TITL CRYSTAL STRUCTURES AND SNAPSHOTS ALONG THE REACTION PATHWAY JRNL TITL 2 OF HUMAN PHOSPHOSERINE PHOSPHATASE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 592 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31205021 JRNL DOI 10.1107/S2059798319006867 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 69605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9595 - 4.5769 0.99 2847 149 0.1920 0.2349 REMARK 3 2 4.5769 - 3.6337 1.00 2707 143 0.1639 0.2021 REMARK 3 3 3.6337 - 3.1746 1.00 2718 143 0.1788 0.2016 REMARK 3 4 3.1746 - 2.8845 1.00 2667 140 0.1970 0.2117 REMARK 3 5 2.8845 - 2.6778 1.00 2691 142 0.2065 0.2409 REMARK 3 6 2.6778 - 2.5199 1.00 2674 141 0.1940 0.2103 REMARK 3 7 2.5199 - 2.3937 1.00 2654 139 0.1947 0.2389 REMARK 3 8 2.3937 - 2.2896 1.00 2682 142 0.2012 0.2360 REMARK 3 9 2.2896 - 2.2014 1.00 2656 139 0.1995 0.2299 REMARK 3 10 2.2014 - 2.1255 1.00 2637 139 0.1951 0.2176 REMARK 3 11 2.1255 - 2.0590 1.00 2657 140 0.1939 0.2407 REMARK 3 12 2.0590 - 2.0002 1.00 2652 139 0.2018 0.2244 REMARK 3 13 2.0002 - 1.9475 1.00 2637 139 0.1987 0.2088 REMARK 3 14 1.9475 - 1.9000 1.00 2642 139 0.1993 0.2410 REMARK 3 15 1.9000 - 1.8568 1.00 2649 140 0.2113 0.2576 REMARK 3 16 1.8568 - 1.8173 1.00 2609 137 0.2141 0.2360 REMARK 3 17 1.8173 - 1.7809 1.00 2671 141 0.2087 0.2282 REMARK 3 18 1.7809 - 1.7473 1.00 2628 138 0.2119 0.2408 REMARK 3 19 1.7473 - 1.7161 1.00 2645 139 0.2116 0.2570 REMARK 3 20 1.7161 - 1.6870 1.00 2603 137 0.2251 0.2660 REMARK 3 21 1.6870 - 1.6598 1.00 2668 141 0.2339 0.2668 REMARK 3 22 1.6598 - 1.6343 1.00 2594 136 0.2498 0.2683 REMARK 3 23 1.6343 - 1.6102 1.00 2656 140 0.2629 0.2732 REMARK 3 24 1.6102 - 1.5876 1.00 2628 139 0.3122 0.3306 REMARK 3 25 1.5876 - 1.5661 0.85 2252 119 0.3922 0.4117 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.566 REMARK 200 RESOLUTION RANGE LOW (A) : 38.947 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01387 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24370 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NNL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CACL2; SODIUM CACODYLATE 0.1 M REMARK 280 PH 6.5; PEG 2000 20%, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.89500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.89500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.57000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.57000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.57000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.57000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.89500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.57000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.57000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.89500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.57000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.57000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 555 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 222 REMARK 465 LEU B 223 REMARK 465 GLU B 224 REMARK 465 GLU B 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 109 O HOH A 401 2.03 REMARK 500 O HOH A 401 O HOH A 449 2.05 REMARK 500 OE1 GLU A 29 O HOH A 402 2.14 REMARK 500 O HOH B 403 O HOH B 513 2.15 REMARK 500 O HOH A 516 O HOH A 549 2.16 REMARK 500 O HOH B 502 O HOH B 505 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 21 -64.53 -90.07 REMARK 500 THR A 24 -73.10 -117.07 REMARK 500 SER A 121 41.13 -83.44 REMARK 500 GLU A 222 -64.64 -131.22 REMARK 500 LEU A 223 -4.39 -155.12 REMARK 500 GLU A 224 79.88 40.28 REMARK 500 GLU B 6 -24.37 72.19 REMARK 500 SER B 13 11.07 59.76 REMARK 500 VAL B 21 -67.58 -100.64 REMARK 500 THR B 24 -74.57 -115.48 REMARK 500 ALA B 43 0.91 -63.14 REMARK 500 VAL B 44 26.86 -75.67 REMARK 500 SER B 45 61.29 -67.24 REMARK 500 GLU B 46 -90.00 -98.03 REMARK 500 LYS B 173 86.11 -150.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 121 LYS A 122 145.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD2 REMARK 620 2 ASP A 22 O 81.8 REMARK 620 3 ASP A 179 OD1 74.4 90.5 REMARK 620 4 HOH A 453 O 95.6 176.6 90.9 REMARK 620 5 HOH A 455 O 156.0 86.5 84.9 96.7 REMARK 620 6 HOH A 515 O 124.6 104.5 156.8 75.2 78.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 20 OD1 REMARK 620 2 ASP B 20 OD2 48.0 REMARK 620 3 ASP B 22 O 98.9 81.7 REMARK 620 4 ASP B 179 OD1 116.1 70.7 86.9 REMARK 620 5 PO4 B 301 O2 66.3 113.2 99.1 173.2 REMARK 620 6 HOH B 435 O 77.1 94.1 175.5 93.0 81.2 REMARK 620 7 HOH B 521 O 156.0 154.5 83.8 87.7 89.7 100.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 DBREF 6HYY A 5 225 UNP P78330 SERB_HUMAN 5 225 DBREF 6HYY B 5 225 UNP P78330 SERB_HUMAN 5 225 SEQRES 1 A 221 SER GLU LEU ARG LYS LEU PHE TYR SER ALA ASP ALA VAL SEQRES 2 A 221 CYS PHE ASP VAL ASP SER THR VAL ILE ARG GLU GLU GLY SEQRES 3 A 221 ILE ASP GLU LEU ALA LYS ILE CYS GLY VAL GLU ASP ALA SEQRES 4 A 221 VAL SER GLU MET THR ARG ARG ALA MET GLY GLY ALA VAL SEQRES 5 A 221 PRO PHE LYS ALA ALA LEU THR GLU ARG LEU ALA LEU ILE SEQRES 6 A 221 GLN PRO SER ARG GLU GLN VAL GLN ARG LEU ILE ALA GLU SEQRES 7 A 221 GLN PRO PRO HIS LEU THR PRO GLY ILE ARG GLU LEU VAL SEQRES 8 A 221 SER ARG LEU GLN GLU ARG ASN VAL GLN VAL PHE LEU ILE SEQRES 9 A 221 SER GLY GLY PHE ARG SER ILE VAL GLU HIS VAL ALA SER SEQRES 10 A 221 LYS LEU ASN ILE PRO ALA THR ASN VAL PHE ALA ASN ARG SEQRES 11 A 221 LEU LYS PHE TYR PHE ASN GLY GLU TYR ALA GLY PHE ASP SEQRES 12 A 221 GLU THR GLN PRO THR ALA GLU SER GLY GLY LYS GLY LYS SEQRES 13 A 221 VAL ILE LYS LEU LEU LYS GLU LYS PHE HIS PHE LYS LYS SEQRES 14 A 221 ILE ILE MET ILE GLY ASP GLY ALA THR ASP MET GLU ALA SEQRES 15 A 221 CYS PRO PRO ALA ASP ALA PHE ILE GLY PHE GLY GLY ASN SEQRES 16 A 221 VAL ILE ARG GLN GLN VAL LYS ASP ASN ALA LYS TRP TYR SEQRES 17 A 221 ILE THR ASP PHE VAL GLU LEU LEU GLY GLU LEU GLU GLU SEQRES 1 B 221 SER GLU LEU ARG LYS LEU PHE TYR SER ALA ASP ALA VAL SEQRES 2 B 221 CYS PHE ASP VAL ASP SER THR VAL ILE ARG GLU GLU GLY SEQRES 3 B 221 ILE ASP GLU LEU ALA LYS ILE CYS GLY VAL GLU ASP ALA SEQRES 4 B 221 VAL SER GLU MET THR ARG ARG ALA MET GLY GLY ALA VAL SEQRES 5 B 221 PRO PHE LYS ALA ALA LEU THR GLU ARG LEU ALA LEU ILE SEQRES 6 B 221 GLN PRO SER ARG GLU GLN VAL GLN ARG LEU ILE ALA GLU SEQRES 7 B 221 GLN PRO PRO HIS LEU THR PRO GLY ILE ARG GLU LEU VAL SEQRES 8 B 221 SER ARG LEU GLN GLU ARG ASN VAL GLN VAL PHE LEU ILE SEQRES 9 B 221 SER GLY GLY PHE ARG SER ILE VAL GLU HIS VAL ALA SER SEQRES 10 B 221 LYS LEU ASN ILE PRO ALA THR ASN VAL PHE ALA ASN ARG SEQRES 11 B 221 LEU LYS PHE TYR PHE ASN GLY GLU TYR ALA GLY PHE ASP SEQRES 12 B 221 GLU THR GLN PRO THR ALA GLU SER GLY GLY LYS GLY LYS SEQRES 13 B 221 VAL ILE LYS LEU LEU LYS GLU LYS PHE HIS PHE LYS LYS SEQRES 14 B 221 ILE ILE MET ILE GLY ASP GLY ALA THR ASP MET GLU ALA SEQRES 15 B 221 CYS PRO PRO ALA ASP ALA PHE ILE GLY PHE GLY GLY ASN SEQRES 16 B 221 VAL ILE ARG GLN GLN VAL LYS ASP ASN ALA LYS TRP TYR SEQRES 17 B 221 ILE THR ASP PHE VAL GLU LEU LEU GLY GLU LEU GLU GLU HET PO4 A 301 5 HET MG A 302 1 HET SER A 303 7 HET PO4 B 301 5 HET CA B 302 1 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM SER SERINE HETNAM CA CALCIUM ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MG MG 2+ FORMUL 5 SER C3 H7 N O3 FORMUL 7 CA CA 2+ FORMUL 8 HOH *347(H2 O) HELIX 1 AA1 SER A 5 SER A 13 1 9 HELIX 2 AA2 GLU A 29 CYS A 38 1 10 HELIX 3 AA3 VAL A 40 ALA A 51 1 12 HELIX 4 AA4 PRO A 57 GLN A 70 1 14 HELIX 5 AA5 SER A 72 GLN A 83 1 12 HELIX 6 AA6 GLY A 90 ARG A 101 1 12 HELIX 7 AA7 ARG A 113 SER A 121 1 9 HELIX 8 AA8 PRO A 126 THR A 128 5 3 HELIX 9 AA9 GLN A 150 GLU A 154 5 5 HELIX 10 AB1 GLY A 156 HIS A 170 1 15 HELIX 11 AB2 GLY A 180 GLU A 185 1 6 HELIX 12 AB3 ARG A 202 ALA A 209 1 8 HELIX 13 AB4 ASP A 215 LEU A 219 5 5 HELIX 14 AB5 GLU B 6 TYR B 12 1 7 HELIX 15 AB6 GLU B 29 CYS B 38 1 10 HELIX 16 AB7 PRO B 57 GLN B 70 1 14 HELIX 17 AB8 SER B 72 GLN B 83 1 12 HELIX 18 AB9 GLY B 90 ARG B 101 1 12 HELIX 19 AC1 ARG B 113 LEU B 123 1 11 HELIX 20 AC2 PRO B 126 THR B 128 5 3 HELIX 21 AC3 GLN B 150 GLU B 154 5 5 HELIX 22 AC4 GLY B 156 HIS B 170 1 15 HELIX 23 AC5 GLY B 180 GLU B 185 1 6 HELIX 24 AC6 ARG B 202 ALA B 209 1 8 HELIX 25 AC7 ASP B 215 GLY B 221 1 7 SHEET 1 AA1 6 VAL A 130 ASN A 133 0 SHEET 2 AA1 6 GLN A 104 PHE A 112 1 N GLY A 111 O ASN A 133 SHEET 3 AA1 6 ALA A 16 ASP A 20 1 N PHE A 19 O PHE A 106 SHEET 4 AA1 6 ILE A 174 GLY A 178 1 O ILE A 175 N CYS A 18 SHEET 5 AA1 6 ALA A 192 PHE A 196 1 O ILE A 194 N MET A 176 SHEET 6 AA1 6 TRP A 211 ILE A 213 1 O TRP A 211 N GLY A 195 SHEET 1 AA2 2 LEU A 135 PHE A 137 0 SHEET 2 AA2 2 TYR A 143 PHE A 146 -1 O ALA A 144 N LYS A 136 SHEET 1 AA3 6 VAL B 130 ASN B 133 0 SHEET 2 AA3 6 GLN B 104 PHE B 112 1 N LEU B 107 O PHE B 131 SHEET 3 AA3 6 ALA B 16 ASP B 20 1 N PHE B 19 O PHE B 106 SHEET 4 AA3 6 ILE B 174 GLY B 178 1 O ILE B 175 N CYS B 18 SHEET 5 AA3 6 ALA B 192 PHE B 196 1 O ALA B 192 N MET B 176 SHEET 6 AA3 6 TRP B 211 ILE B 213 1 O TRP B 211 N GLY B 195 SHEET 1 AA4 2 LEU B 135 PHE B 137 0 SHEET 2 AA4 2 TYR B 143 PHE B 146 -1 O GLY B 145 N LYS B 136 LINK OD2 ASP A 20 MG MG A 302 1555 1555 2.19 LINK O ASP A 22 MG MG A 302 1555 1555 2.29 LINK OD1 ASP A 179 MG MG A 302 1555 1555 2.27 LINK MG MG A 302 O HOH A 453 1555 1555 2.23 LINK MG MG A 302 O HOH A 455 1555 1555 2.24 LINK MG MG A 302 O HOH A 515 1555 1555 2.04 LINK OD1 ASP B 20 CA CA B 302 1555 1555 2.91 LINK OD2 ASP B 20 CA CA B 302 1555 1555 2.26 LINK O ASP B 22 CA CA B 302 1555 1555 2.32 LINK OD1 ASP B 179 CA CA B 302 1555 1555 2.31 LINK O2 PO4 B 301 CA CA B 302 1555 1555 2.42 LINK CA CA B 302 O HOH B 435 1555 1555 2.41 LINK CA CA B 302 O HOH B 521 1555 1555 2.35 CISPEP 1 CYS A 187 PRO A 188 0 1.38 CISPEP 2 PRO A 188 PRO A 189 0 6.92 CISPEP 3 CYS B 187 PRO B 188 0 -8.46 CISPEP 4 PRO B 188 PRO B 189 0 5.94 SITE 1 AC1 10 MET A 52 GLY A 53 GLY A 180 ALA A 181 SITE 2 AC1 10 THR A 182 ARG A 202 HOH A 404 HOH A 417 SITE 3 AC1 10 HOH A 419 HOH A 453 SITE 1 AC2 6 ASP A 20 ASP A 22 ASP A 179 HOH A 453 SITE 2 AC2 6 HOH A 455 HOH A 515 SITE 1 AC3 12 ASP A 20 VAL A 21 ASP A 22 ILE A 108 SITE 2 AC3 12 SER A 109 GLY A 110 LYS A 158 HOH A 401 SITE 3 AC3 12 HOH A 402 HOH A 404 HOH A 446 HOH A 515 SITE 1 AC4 11 ASP B 20 VAL B 21 ASP B 22 SER B 109 SITE 2 AC4 11 GLY B 110 GLY B 111 LYS B 158 CA B 302 SITE 3 AC4 11 HOH B 417 HOH B 461 HOH B 501 SITE 1 AC5 6 ASP B 20 ASP B 22 ASP B 179 PO4 B 301 SITE 2 AC5 6 HOH B 435 HOH B 521 CRYST1 49.140 129.140 155.790 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006419 0.00000