HEADER PEPTIDE BINDING PROTEIN 23-OCT-18 6HZQ TITLE APO STRUCTURE OF TP DOMAIN FROM ESCHERICHIA COLI PENICILLIN-BINDING TITLE 2 PROTEIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 3,PBP-3; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FTSI, APZ14_15225; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PENICILLIN-BINDING PROTEIN, PEPTIDOGLYCAN, TRANSPEPTIDASE, PEPTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,L.KOEKEMOER,H.NEWMAN,C.G.DOWSON REVDAT 3 24-JAN-24 6HZQ 1 REMARK REVDAT 2 19-FEB-20 6HZQ 1 JRNL REVDAT 1 20-NOV-19 6HZQ 0 JRNL AUTH D.BELLINI,L.KOEKEMOER,H.NEWMAN,C.G.DOWSON JRNL TITL NOVEL AND IMPROVED CRYSTAL STRUCTURES OF H. INFLUENZAE, E. JRNL TITL 2 COLI AND P. AERUGINOSA PENICILLIN-BINDING PROTEIN 3 (PBP3) JRNL TITL 3 AND N. GONORRHOEAE PBP2: TOWARD A BETTER UNDERSTANDING OF JRNL TITL 4 BETA-LACTAM TARGET-MEDIATED RESISTANCE. JRNL REF J.MOL.BIOL. V. 431 3501 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 31301409 JRNL DOI 10.1016/J.JMB.2019.07.010 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 53.6 REMARK 3 NUMBER OF REFLECTIONS : 11318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 0.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.694 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.808 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.884 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2286 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3104 ; 1.605 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.795 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;32.155 ;22.927 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;13.208 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.493 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1689 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11868 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 78.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 4BJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6,000, 0.1 M CACL2, 15% REMARK 280 ETHYLENE GLYCOL AND 0.1 M TRISHCL PH 9, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.52650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 21.52650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.93500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.01250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.93500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.01250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.52650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.93500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.01250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 21.52650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.93500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.01250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 227 REMARK 465 PRO A 228 REMARK 465 GLY A 229 REMARK 465 TYR A 230 REMARK 465 GLN A 231 REMARK 465 ASP A 232 REMARK 465 PRO A 233 REMARK 465 GLY A 294 REMARK 465 ARG A 295 REMARK 465 ASN A 296 REMARK 465 ASN A 337 REMARK 465 GLY A 338 REMARK 465 GLY A 392 REMARK 465 LEU A 393 REMARK 465 VAL A 394 REMARK 465 GLY A 395 REMARK 465 GLU A 396 REMARK 465 ARG A 397 REMARK 465 SER A 398 REMARK 465 GLY A 399 REMARK 465 LEU A 400 REMARK 465 GLN A 403 REMARK 465 LYS A 404 REMARK 465 GLN A 405 REMARK 465 ARG A 406 REMARK 465 TRP A 407 REMARK 465 LEU A 568 REMARK 465 THR A 569 REMARK 465 THR A 570 REMARK 465 GLY A 571 REMARK 465 ASP A 572 REMARK 465 LYS A 573 REMARK 465 ASN A 574 REMARK 465 GLU A 575 REMARK 465 PHE A 576 REMARK 465 VAL A 577 REMARK 465 ILE A 578 REMARK 465 ASN A 579 REMARK 465 GLN A 580 REMARK 465 GLY A 581 REMARK 465 GLU A 582 REMARK 465 GLY A 583 REMARK 465 THR A 584 REMARK 465 GLY A 585 REMARK 465 GLY A 586 REMARK 465 ARG A 587 REMARK 465 SER A 588 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 520 O GLN A 523 1.77 REMARK 500 OG SER A 522 OD1 ASP A 566 2.15 REMARK 500 O TYR A 540 O HOH A 601 2.16 REMARK 500 NZ LYS A 310 OG SER A 359 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 324 NH1 ARG A 525 6554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 524 C - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 269 -31.32 -134.04 REMARK 500 ASP A 301 -158.88 -89.82 REMARK 500 ASN A 562 58.81 36.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HZH RELATED DB: PDB REMARK 900 RELATED ID: 6HZI RELATED DB: PDB REMARK 900 RELATED ID: 6HZJ RELATED DB: PDB REMARK 900 RELATED ID: 6HZO RELATED DB: PDB REMARK 900 RELATED ID: 4BJP RELATED DB: PDB DBREF1 6HZQ A 234 588 UNP A0A0V7WLC6_ECOLX DBREF2 6HZQ A A0A0V7WLC6 234 588 SEQADV 6HZQ GLY A 227 UNP A0A0V7WLC EXPRESSION TAG SEQADV 6HZQ PRO A 228 UNP A0A0V7WLC EXPRESSION TAG SEQADV 6HZQ GLY A 229 UNP A0A0V7WLC EXPRESSION TAG SEQADV 6HZQ TYR A 230 UNP A0A0V7WLC EXPRESSION TAG SEQADV 6HZQ GLN A 231 UNP A0A0V7WLC EXPRESSION TAG SEQADV 6HZQ ASP A 232 UNP A0A0V7WLC EXPRESSION TAG SEQADV 6HZQ PRO A 233 UNP A0A0V7WLC EXPRESSION TAG SEQADV 6HZQ A UNP A0A0V7WLC SER 280 DELETION SEQADV 6HZQ A UNP A0A0V7WLC TYR 281 DELETION SEQADV 6HZQ A UNP A0A0V7WLC ASN 282 DELETION SEQADV 6HZQ A UNP A0A0V7WLC PRO 283 DELETION SEQADV 6HZQ A UNP A0A0V7WLC ASN 284 DELETION SEQADV 6HZQ A UNP A0A0V7WLC ASN 285 DELETION SEQADV 6HZQ A UNP A0A0V7WLC LEU 286 DELETION SEQADV 6HZQ A UNP A0A0V7WLC SER 287 DELETION SEQADV 6HZQ A UNP A0A0V7WLC GLY 288 DELETION SEQADV 6HZQ A UNP A0A0V7WLC THR 289 DELETION SEQADV 6HZQ A UNP A0A0V7WLC PRO 290 DELETION SEQADV 6HZQ A UNP A0A0V7WLC LYS 291 DELETION SEQADV 6HZQ A UNP A0A0V7WLC GLU 292 DELETION SEQADV 6HZQ A UNP A0A0V7WLC ALA 293 DELETION SEQADV 6HZQ GLY A 294 UNP A0A0V7WLC MET 294 CONFLICT SEQRES 1 A 348 GLY PRO GLY TYR GLN ASP PRO LEU SER ILE ASP GLU ARG SEQRES 2 A 348 LEU GLN ALA LEU VAL TYR ARG GLU LEU ASN ASN ALA VAL SEQRES 3 A 348 ALA PHE ASN LYS ALA GLU SER GLY SER ALA VAL LEU VAL SEQRES 4 A 348 ASP VAL ASN THR GLY GLU VAL LEU ALA MET ALA ASN SER SEQRES 5 A 348 PRO GLY ARG ASN ARG THR ILE THR ASP VAL PHE GLU PRO SEQRES 6 A 348 GLY SER THR VAL LYS PRO MET VAL VAL MET THR ALA LEU SEQRES 7 A 348 GLN ARG GLY VAL VAL ARG GLU ASN SER VAL LEU ASN THR SEQRES 8 A 348 ILE PRO TYR ARG ILE ASN GLY HIS GLU ILE LYS ASP VAL SEQRES 9 A 348 ALA ARG TYR SER GLU LEU THR LEU THR GLY VAL LEU GLN SEQRES 10 A 348 LYS SER SER ASN VAL GLY VAL SER LYS LEU ALA LEU ALA SEQRES 11 A 348 MET PRO SER SER ALA LEU VAL ASP THR TYR SER ARG PHE SEQRES 12 A 348 GLY LEU GLY LYS ALA THR ASN LEU GLY LEU VAL GLY GLU SEQRES 13 A 348 ARG SER GLY LEU TYR PRO GLN LYS GLN ARG TRP SER ASP SEQRES 14 A 348 ILE GLU ARG ALA THR PHE SER PHE GLY TYR GLY LEU MET SEQRES 15 A 348 VAL THR PRO LEU GLN LEU ALA ARG VAL TYR ALA THR ILE SEQRES 16 A 348 GLY SER TYR GLY ILE TYR ARG PRO LEU SER ILE THR LYS SEQRES 17 A 348 VAL ASP PRO PRO VAL PRO GLY GLU ARG VAL PHE PRO GLU SEQRES 18 A 348 SER ILE VAL ARG THR VAL VAL HIS MET MET GLU SER VAL SEQRES 19 A 348 ALA LEU PRO GLY GLY GLY GLY VAL LYS ALA ALA ILE LYS SEQRES 20 A 348 GLY TYR ARG ILE ALA ILE LYS THR GLY THR ALA LYS LYS SEQRES 21 A 348 VAL GLY PRO ASP GLY ARG TYR ILE ASN LYS TYR ILE ALA SEQRES 22 A 348 TYR THR ALA GLY VAL ALA PRO ALA SER GLN PRO ARG PHE SEQRES 23 A 348 ALA LEU VAL VAL VAL ILE ASN ASP PRO GLN ALA GLY LYS SEQRES 24 A 348 TYR TYR GLY GLY ALA VAL SER ALA PRO VAL PHE GLY ALA SEQRES 25 A 348 ILE MET GLY GLY VAL LEU ARG THR MET ASN ILE GLU PRO SEQRES 26 A 348 ASP ALA LEU THR THR GLY ASP LYS ASN GLU PHE VAL ILE SEQRES 27 A 348 ASN GLN GLY GLU GLY THR GLY GLY ARG SER FORMUL 2 HOH *51(H2 O) HELIX 1 AA1 ASP A 237 ASN A 255 1 19 HELIX 2 AA2 PRO A 305 THR A 308 5 4 HELIX 3 AA3 VAL A 309 ARG A 320 1 12 HELIX 4 AA4 LEU A 352 LYS A 358 1 7 HELIX 5 AA5 SER A 360 ALA A 370 1 11 HELIX 6 AA6 SER A 373 PHE A 383 1 11 HELIX 7 AA7 ASP A 409 PHE A 417 1 9 HELIX 8 AA8 THR A 424 SER A 437 1 14 HELIX 9 AA9 PRO A 460 MET A 471 1 12 HELIX 10 AB1 GLU A 472 ALA A 475 5 4 HELIX 11 AB2 GLY A 481 ALA A 485 5 5 HELIX 12 AB3 SER A 546 MET A 561 1 16 SHEET 1 AA1 5 VAL A 272 SER A 278 0 SHEET 2 AA1 5 SER A 259 ASP A 266 -1 N LEU A 264 O ALA A 274 SHEET 3 AA1 5 PHE A 526 ASN A 533 -1 O VAL A 531 N SER A 261 SHEET 4 AA1 5 TYR A 507 ALA A 519 -1 N THR A 515 O VAL A 530 SHEET 5 AA1 5 ALA A 492 GLY A 496 -1 N GLY A 496 O TYR A 514 SHEET 1 AA2 5 VAL A 272 SER A 278 0 SHEET 2 AA2 5 SER A 259 ASP A 266 -1 N LEU A 264 O ALA A 274 SHEET 3 AA2 5 PHE A 526 ASN A 533 -1 O VAL A 531 N SER A 261 SHEET 4 AA2 5 TYR A 507 ALA A 519 -1 N THR A 515 O VAL A 530 SHEET 5 AA2 5 LYS A 499 VAL A 501 -1 N LYS A 500 O ILE A 508 SHEET 1 AA3 2 VAL A 328 ASN A 330 0 SHEET 2 AA3 2 GLU A 349 THR A 351 -1 O LEU A 350 N LEU A 329 SHEET 1 AA4 2 ILE A 440 TYR A 441 0 SHEET 2 AA4 2 GLU A 456 ARG A 457 -1 O GLU A 456 N TYR A 441 CISPEP 1 PRO A 451 PRO A 452 0 -1.71 CISPEP 2 ALA A 519 PRO A 520 0 -8.92 CRYST1 91.870 150.025 43.053 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023227 0.00000