data_6I1M # _entry.id 6I1M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6I1M pdb_00006i1m 10.2210/pdb6i1m/pdb WWPDB D_1200011469 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6I1M _pdbx_database_status.recvd_initial_deposition_date 2018-10-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Busa, M.' 1 0000-0002-4750-5992 'Rezacova, P.' 2 0000-0001-9626-346X 'Pachl, P.' 3 0000-0001-9215-9817 'Stefanic, S.' 4 0000-0001-7367-1831 'Mares, M.' 5 0000-0002-0847-5022 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 299 _citation.language ? _citation.page_first 102970 _citation.page_last 102970 _citation.title ;An evolutionary molecular adaptation of an unusual stefin from the liver fluke Fasciola hepatica redefines the cystatin superfamily. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2023.102970 _citation.pdbx_database_id_PubMed 36736427 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Busa, M.' 1 ? primary 'Matouskova, Z.' 2 ? primary 'Bartosova-Sojkova, P.' 3 ? primary 'Pachl, P.' 4 ? primary 'Rezacova, P.' 5 ? primary 'Eichenberger, R.M.' 6 ? primary 'Deplazes, P.' 7 ? primary 'Horn, M.' 8 ? primary 'Stefanic, S.' 9 ? primary 'Mares, M.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6I1M _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.878 _cell.length_a_esd ? _cell.length_b 67.177 _cell.length_b_esd ? _cell.length_c 44.493 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Cystatin 9799.197 1 ? ? ? ;IRG: N-terminal cloning artifact AAAHHHHHH: C-terminal His-tag E36V, I54T: natural mutations found in the sequence (compared to GenBank AAV68752.1) ; 2 non-polymer syn 'IODIDE ION' 126.904 2 ? ? ? ? 3 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VGGYTEPRSVTPEERSVFQPMILSKLLTAGSVVSSCELELLQVSTQVVAGTNYKFKVSGGATCPGCWEVVVFVPLYSSKS ATSVGTPTRVSCT ; _entity_poly.pdbx_seq_one_letter_code_can ;VGGYTEPRSVTPEERSVFQPMILSKLLTAGSVVSSCELELLQVSTQVVAGTNYKFKVSGGATCPGCWEVVVFVPLYSSKS ATSVGTPTRVSCT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLY n 1 3 GLY n 1 4 TYR n 1 5 THR n 1 6 GLU n 1 7 PRO n 1 8 ARG n 1 9 SER n 1 10 VAL n 1 11 THR n 1 12 PRO n 1 13 GLU n 1 14 GLU n 1 15 ARG n 1 16 SER n 1 17 VAL n 1 18 PHE n 1 19 GLN n 1 20 PRO n 1 21 MET n 1 22 ILE n 1 23 LEU n 1 24 SER n 1 25 LYS n 1 26 LEU n 1 27 LEU n 1 28 THR n 1 29 ALA n 1 30 GLY n 1 31 SER n 1 32 VAL n 1 33 VAL n 1 34 SER n 1 35 SER n 1 36 CYS n 1 37 GLU n 1 38 LEU n 1 39 GLU n 1 40 LEU n 1 41 LEU n 1 42 GLN n 1 43 VAL n 1 44 SER n 1 45 THR n 1 46 GLN n 1 47 VAL n 1 48 VAL n 1 49 ALA n 1 50 GLY n 1 51 THR n 1 52 ASN n 1 53 TYR n 1 54 LYS n 1 55 PHE n 1 56 LYS n 1 57 VAL n 1 58 SER n 1 59 GLY n 1 60 GLY n 1 61 ALA n 1 62 THR n 1 63 CYS n 1 64 PRO n 1 65 GLY n 1 66 CYS n 1 67 TRP n 1 68 GLU n 1 69 VAL n 1 70 VAL n 1 71 VAL n 1 72 PHE n 1 73 VAL n 1 74 PRO n 1 75 LEU n 1 76 TYR n 1 77 SER n 1 78 SER n 1 79 LYS n 1 80 SER n 1 81 ALA n 1 82 THR n 1 83 SER n 1 84 VAL n 1 85 GLY n 1 86 THR n 1 87 PRO n 1 88 THR n 1 89 ARG n 1 90 VAL n 1 91 SER n 1 92 CYS n 1 93 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 108 _entity_src_gen.gene_src_common_name 'Liver fluke' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Cyt _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Fasciola hepatica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6192 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Komagataella phaffii GS115' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 644223 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q17TZ2_FASHE _struct_ref.pdbx_db_accession Q17TZ2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VGGYTEPRSVTPEERSVFQPMILSKLLTAGSVESSCELELLQVSTQVVAGINYKFKVSGGATCPGCWEVVVFVPLYSSKS ATSVGTPTRVSCT ; _struct_ref.pdbx_align_begin 24 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6I1M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q17TZ2 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 116 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 96 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6I1M VAL A 33 ? UNP Q17TZ2 GLU 56 conflict 36 1 1 6I1M THR A 51 ? UNP Q17TZ2 ILE 74 conflict 54 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6I1M _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.43 _exptl_crystal.description 'very small needles in phase separation' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;2.0M Ammonium Sulfate 0.1M Sodium Iodide 0.1M Sodium HEPES 7.5 5% v/v PEG 400 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-03-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9184 1.0 2 1.5 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '0.9184, 1.5' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 26.772 _reflns.entry_id 6I1M _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 46.670 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13043 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.717 _reflns.pdbx_Rmerge_I_obs 0.158 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.940 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.170 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.172 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 87605 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.600 1.690 ? 0.880 ? ? ? ? 2058 97.800 ? ? ? ? 1.921 ? ? ? ? ? ? ? ? 6.572 ? ? ? ? 2.086 ? ? 1 1 0.434 ? 1.690 1.810 ? 1.480 ? ? ? ? 1982 99.900 ? ? ? ? 1.288 ? ? ? ? ? ? ? ? 7.037 ? ? ? ? 1.391 ? ? 2 1 0.685 ? 1.810 1.960 ? 2.820 ? ? ? ? 1814 97.800 ? ? ? ? 0.695 ? ? ? ? ? ? ? ? 6.781 ? ? ? ? 0.752 ? ? 3 1 0.917 ? 1.960 2.140 ? 4.760 ? ? ? ? 1706 99.800 ? ? ? ? 0.409 ? ? ? ? ? ? ? ? 6.764 ? ? ? ? 0.444 ? ? 4 1 0.943 ? 2.140 2.390 ? 7.280 ? ? ? ? 1474 94.400 ? ? ? ? 0.261 ? ? ? ? ? ? ? ? 6.965 ? ? ? ? 0.283 ? ? 5 1 0.978 ? 2.390 2.760 ? 10.540 ? ? ? ? 1369 99.600 ? ? ? ? 0.164 ? ? ? ? ? ? ? ? 6.686 ? ? ? ? 0.178 ? ? 6 1 0.990 ? 2.760 3.380 ? 18.470 ? ? ? ? 1178 99.100 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 6.797 ? ? ? ? 0.097 ? ? 7 1 0.996 ? 3.380 4.770 ? 25.670 ? ? ? ? 909 98.300 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 6.149 ? ? ? ? 0.065 ? ? 8 1 0.997 ? 4.770 46.670 ? 27.570 ? ? ? ? 553 99.500 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 5.926 ? ? ? ? 0.057 ? ? 9 1 0.998 ? # _refine.aniso_B[1][1] 2.8300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] -1.3200 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -1.5100 _refine.B_iso_max 74.330 _refine.B_iso_mean 26.1320 _refine.B_iso_min 16.610 _refine.correlation_coeff_Fo_to_Fc 0.9600 _refine.correlation_coeff_Fo_to_Fc_free 0.9360 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6I1M _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 46.6700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12390 _refine.ls_number_reflns_R_free 653 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.3900 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2189 _refine.ls_R_factor_R_free 0.2616 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2167 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1050 _refine.pdbx_overall_ESU_R_Free 0.1090 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 46.6700 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 784 _refine_hist.pdbx_number_residues_total 93 _refine_hist.pdbx_B_iso_mean_ligand 23.39 _refine_hist.pdbx_B_iso_mean_solvent 36.18 _refine_hist.pdbx_number_atoms_protein 684 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.047 0.013 727 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.036 0.017 681 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.232 1.649 1000 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.362 1.561 1589 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.494 5.000 100 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 23.696 20.800 25 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.281 15.000 118 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 11.047 15.000 4 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.064 0.200 100 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 812 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 144 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.5970 _refine_ls_shell.d_res_low 1.6390 _refine_ls_shell.number_reflns_all 926 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_R_work 879 _refine_ls_shell.percent_reflns_obs 95.9600 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3530 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.4520 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6I1M _struct.title 'Secreted type 1 cystatin from Fasciola hepatica' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6I1M _struct_keywords.text 'cystatin, stefin, protease inhibitor, fasciola hepatica, hydrolase inhibitor' _struct_keywords.pdbx_keywords 'Hydrolase inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 11 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 29 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 14 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 32 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 36 SG A ? ? 1_555 A CYS 63 SG A ? A CYS 39 A CYS 66 1_555 ? ? ? ? ? ? ? 2.072 ? ? disulf2 disulf ? ? A CYS 66 SG ? ? ? 1_555 A CYS 92 SG ? ? A CYS 69 A CYS 95 1_555 ? ? ? ? ? ? ? 2.080 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 38 ? VAL A 47 ? LEU A 41 VAL A 50 AA1 2 GLY A 50 ? GLY A 59 ? GLY A 53 GLY A 62 AA1 3 CYS A 66 ? PRO A 74 ? CYS A 69 PRO A 77 AA1 4 SER A 83 ? VAL A 84 ? SER A 86 VAL A 87 AA2 1 LEU A 38 ? VAL A 47 ? LEU A 41 VAL A 50 AA2 2 GLY A 50 ? GLY A 59 ? GLY A 53 GLY A 62 AA2 3 CYS A 66 ? PRO A 74 ? CYS A 69 PRO A 77 AA2 4 THR A 88 ? VAL A 90 ? THR A 91 VAL A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 44 ? N SER A 47 O LYS A 54 ? O LYS A 57 AA1 2 3 N TYR A 53 ? N TYR A 56 O VAL A 71 ? O VAL A 74 AA1 3 4 N PHE A 72 ? N PHE A 75 O SER A 83 ? O SER A 86 AA2 1 2 N SER A 44 ? N SER A 47 O LYS A 54 ? O LYS A 57 AA2 2 3 N TYR A 53 ? N TYR A 56 O VAL A 71 ? O VAL A 74 AA2 3 4 N GLU A 68 ? N GLU A 71 O THR A 88 ? O THR A 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 101 ? 2 'binding site for residue IOD A 101' AC2 Software A IOD 102 ? 4 'binding site for residue IOD A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 15 ? ARG A 18 . ? 6_555 ? 2 AC1 2 LEU A 40 ? LEU A 43 . ? 6_555 ? 3 AC2 4 ARG A 89 ? ARG A 92 . ? 1_555 ? 4 AC2 4 ARG A 89 ? ARG A 92 . ? 4_556 ? 5 AC2 4 HOH D . ? HOH A 273 . ? 4_556 ? 6 AC2 4 HOH D . ? HOH A 273 . ? 1_555 ? # _atom_sites.entry_id 6I1M _atom_sites.fract_transf_matrix[1][1] 0.015414 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014886 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022475 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 4 4 VAL VAL A . n A 1 2 GLY 2 5 5 GLY GLY A . n A 1 3 GLY 3 6 6 GLY GLY A . n A 1 4 TYR 4 7 7 TYR TYR A . n A 1 5 THR 5 8 8 THR THR A . n A 1 6 GLU 6 9 9 GLU GLU A . n A 1 7 PRO 7 10 10 PRO PRO A . n A 1 8 ARG 8 11 11 ARG ARG A . n A 1 9 SER 9 12 12 SER SER A . n A 1 10 VAL 10 13 13 VAL VAL A . n A 1 11 THR 11 14 14 THR THR A . n A 1 12 PRO 12 15 15 PRO PRO A . n A 1 13 GLU 13 16 16 GLU GLU A . n A 1 14 GLU 14 17 17 GLU GLU A . n A 1 15 ARG 15 18 18 ARG ARG A . n A 1 16 SER 16 19 19 SER SER A . n A 1 17 VAL 17 20 20 VAL VAL A . n A 1 18 PHE 18 21 21 PHE PHE A . n A 1 19 GLN 19 22 22 GLN GLN A . n A 1 20 PRO 20 23 23 PRO PRO A . n A 1 21 MET 21 24 24 MET MET A . n A 1 22 ILE 22 25 25 ILE ILE A . n A 1 23 LEU 23 26 26 LEU LEU A . n A 1 24 SER 24 27 27 SER SER A . n A 1 25 LYS 25 28 28 LYS LYS A . n A 1 26 LEU 26 29 29 LEU LEU A . n A 1 27 LEU 27 30 30 LEU LEU A . n A 1 28 THR 28 31 31 THR THR A . n A 1 29 ALA 29 32 32 ALA ALA A . n A 1 30 GLY 30 33 33 GLY GLY A . n A 1 31 SER 31 34 34 SER SER A . n A 1 32 VAL 32 35 35 VAL VAL A . n A 1 33 VAL 33 36 36 VAL VAL A . n A 1 34 SER 34 37 37 SER SER A . n A 1 35 SER 35 38 38 SER SER A . n A 1 36 CYS 36 39 39 CYS CYS A . n A 1 37 GLU 37 40 40 GLU GLU A . n A 1 38 LEU 38 41 41 LEU LEU A . n A 1 39 GLU 39 42 42 GLU GLU A . n A 1 40 LEU 40 43 43 LEU LEU A . n A 1 41 LEU 41 44 44 LEU LEU A . n A 1 42 GLN 42 45 45 GLN GLN A . n A 1 43 VAL 43 46 46 VAL VAL A . n A 1 44 SER 44 47 47 SER SER A . n A 1 45 THR 45 48 48 THR THR A . n A 1 46 GLN 46 49 49 GLN GLN A . n A 1 47 VAL 47 50 50 VAL VAL A . n A 1 48 VAL 48 51 51 VAL VAL A . n A 1 49 ALA 49 52 52 ALA ALA A . n A 1 50 GLY 50 53 53 GLY GLY A . n A 1 51 THR 51 54 54 THR THR A . n A 1 52 ASN 52 55 55 ASN ASN A . n A 1 53 TYR 53 56 56 TYR TYR A . n A 1 54 LYS 54 57 57 LYS LYS A . n A 1 55 PHE 55 58 58 PHE PHE A . n A 1 56 LYS 56 59 59 LYS LYS A . n A 1 57 VAL 57 60 60 VAL VAL A . n A 1 58 SER 58 61 61 SER SER A . n A 1 59 GLY 59 62 62 GLY GLY A . n A 1 60 GLY 60 63 63 GLY GLY A . n A 1 61 ALA 61 64 64 ALA ALA A . n A 1 62 THR 62 65 65 THR THR A . n A 1 63 CYS 63 66 66 CYS CYS A . n A 1 64 PRO 64 67 67 PRO PRO A . n A 1 65 GLY 65 68 68 GLY GLY A . n A 1 66 CYS 66 69 69 CYS CYS A . n A 1 67 TRP 67 70 70 TRP TRP A . n A 1 68 GLU 68 71 71 GLU GLU A . n A 1 69 VAL 69 72 72 VAL VAL A . n A 1 70 VAL 70 73 73 VAL VAL A . n A 1 71 VAL 71 74 74 VAL VAL A . n A 1 72 PHE 72 75 75 PHE PHE A . n A 1 73 VAL 73 76 76 VAL VAL A . n A 1 74 PRO 74 77 77 PRO PRO A . n A 1 75 LEU 75 78 78 LEU LEU A . n A 1 76 TYR 76 79 79 TYR TYR A . n A 1 77 SER 77 80 80 SER SER A . n A 1 78 SER 78 81 81 SER SER A . n A 1 79 LYS 79 82 82 LYS LYS A . n A 1 80 SER 80 83 83 SER SER A . n A 1 81 ALA 81 84 84 ALA ALA A . n A 1 82 THR 82 85 85 THR THR A . n A 1 83 SER 83 86 86 SER SER A . n A 1 84 VAL 84 87 87 VAL VAL A . n A 1 85 GLY 85 88 88 GLY GLY A . n A 1 86 THR 86 89 89 THR THR A . n A 1 87 PRO 87 90 90 PRO PRO A . n A 1 88 THR 88 91 91 THR THR A . n A 1 89 ARG 89 92 92 ARG ARG A . n A 1 90 VAL 90 93 93 VAL VAL A . n A 1 91 SER 91 94 94 SER SER A . n A 1 92 CYS 92 95 95 CYS CYS A . n A 1 93 THR 93 96 96 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 101 1 IOD IOD A . C 2 IOD 1 102 2 IOD IOD A . D 3 HOH 1 201 89 HOH HOH A . D 3 HOH 2 202 91 HOH HOH A . D 3 HOH 3 203 74 HOH HOH A . D 3 HOH 4 204 76 HOH HOH A . D 3 HOH 5 205 25 HOH HOH A . D 3 HOH 6 206 47 HOH HOH A . D 3 HOH 7 207 58 HOH HOH A . D 3 HOH 8 208 1 HOH HOH A . D 3 HOH 9 209 17 HOH HOH A . D 3 HOH 10 210 32 HOH HOH A . D 3 HOH 11 211 44 HOH HOH A . D 3 HOH 12 212 20 HOH HOH A . D 3 HOH 13 213 80 HOH HOH A . D 3 HOH 14 214 62 HOH HOH A . D 3 HOH 15 215 57 HOH HOH A . D 3 HOH 16 216 96 HOH HOH A . D 3 HOH 17 217 90 HOH HOH A . D 3 HOH 18 218 8 HOH HOH A . D 3 HOH 19 219 86 HOH HOH A . D 3 HOH 20 220 19 HOH HOH A . D 3 HOH 21 221 10 HOH HOH A . D 3 HOH 22 222 2 HOH HOH A . D 3 HOH 23 223 39 HOH HOH A . D 3 HOH 24 224 87 HOH HOH A . D 3 HOH 25 225 68 HOH HOH A . D 3 HOH 26 226 72 HOH HOH A . D 3 HOH 27 227 95 HOH HOH A . D 3 HOH 28 228 5 HOH HOH A . D 3 HOH 29 229 6 HOH HOH A . D 3 HOH 30 230 42 HOH HOH A . D 3 HOH 31 231 12 HOH HOH A . D 3 HOH 32 232 3 HOH HOH A . D 3 HOH 33 233 28 HOH HOH A . D 3 HOH 34 234 16 HOH HOH A . D 3 HOH 35 235 13 HOH HOH A . D 3 HOH 36 236 71 HOH HOH A . D 3 HOH 37 237 15 HOH HOH A . D 3 HOH 38 238 18 HOH HOH A . D 3 HOH 39 239 64 HOH HOH A . D 3 HOH 40 240 75 HOH HOH A . D 3 HOH 41 241 22 HOH HOH A . D 3 HOH 42 242 83 HOH HOH A . D 3 HOH 43 243 24 HOH HOH A . D 3 HOH 44 244 79 HOH HOH A . D 3 HOH 45 245 77 HOH HOH A . D 3 HOH 46 246 4 HOH HOH A . D 3 HOH 47 247 45 HOH HOH A . D 3 HOH 48 248 46 HOH HOH A . D 3 HOH 49 249 85 HOH HOH A . D 3 HOH 50 250 55 HOH HOH A . D 3 HOH 51 251 11 HOH HOH A . D 3 HOH 52 252 66 HOH HOH A . D 3 HOH 53 253 40 HOH HOH A . D 3 HOH 54 254 88 HOH HOH A . D 3 HOH 55 255 26 HOH HOH A . D 3 HOH 56 256 52 HOH HOH A . D 3 HOH 57 257 9 HOH HOH A . D 3 HOH 58 258 34 HOH HOH A . D 3 HOH 59 259 37 HOH HOH A . D 3 HOH 60 260 23 HOH HOH A . D 3 HOH 61 261 97 HOH HOH A . D 3 HOH 62 262 48 HOH HOH A . D 3 HOH 63 263 43 HOH HOH A . D 3 HOH 64 264 41 HOH HOH A . D 3 HOH 65 265 65 HOH HOH A . D 3 HOH 66 266 21 HOH HOH A . D 3 HOH 67 267 93 HOH HOH A . D 3 HOH 68 268 63 HOH HOH A . D 3 HOH 69 269 30 HOH HOH A . D 3 HOH 70 270 82 HOH HOH A . D 3 HOH 71 271 50 HOH HOH A . D 3 HOH 72 272 73 HOH HOH A . D 3 HOH 73 273 98 HOH HOH A . D 3 HOH 74 274 7 HOH HOH A . D 3 HOH 75 275 67 HOH HOH A . D 3 HOH 76 276 54 HOH HOH A . D 3 HOH 77 277 84 HOH HOH A . D 3 HOH 78 278 35 HOH HOH A . D 3 HOH 79 279 49 HOH HOH A . D 3 HOH 80 280 27 HOH HOH A . D 3 HOH 81 281 33 HOH HOH A . D 3 HOH 82 282 14 HOH HOH A . D 3 HOH 83 283 29 HOH HOH A . D 3 HOH 84 284 94 HOH HOH A . D 3 HOH 85 285 70 HOH HOH A . D 3 HOH 86 286 51 HOH HOH A . D 3 HOH 87 287 31 HOH HOH A . D 3 HOH 88 288 69 HOH HOH A . D 3 HOH 89 289 92 HOH HOH A . D 3 HOH 90 290 56 HOH HOH A . D 3 HOH 91 291 38 HOH HOH A . D 3 HOH 92 292 61 HOH HOH A . D 3 HOH 93 293 36 HOH HOH A . D 3 HOH 94 294 78 HOH HOH A . D 3 HOH 95 295 81 HOH HOH A . D 3 HOH 96 296 60 HOH HOH A . D 3 HOH 97 297 53 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 230 ? 1 MORE -0 ? 1 'SSA (A^2)' 5800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A IOD 102 ? C IOD . 2 1 A HOH 273 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-26 2 'Structure model' 1 1 2023-03-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_database_2.pdbx_DOI' 14 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0232 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 51 ? ? -118.68 -136.19 2 1 CYS A 66 ? A -147.14 51.50 3 1 CYS A 66 ? B -152.80 57.98 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Regional Development Fund' 'Czech Republic' CZ.02.1.01/0.0/0.0/16_019/0000729 1 'Czech Academy of Sciences' 'Czech Republic' 61388963 2 'Ministry of Education, Youth and Sports of the Czech Republic' 'Czech Republic' LO1304 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'mass spectrometry' ? 2 1 'gel filtration' ? #