HEADER TRANSCRIPTION 31-OCT-18 6I21 TITLE FLAVIN ANALOGUE SHEDS LIGHT ON LIGHT-OXYGEN-VOLTAGE DOMAIN MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUREOCHROME1-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROMONAS DANICA; SOURCE 3 ORGANISM_TAXID: 2986; SOURCE 4 GENE: ODAUREO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LOV DOMAIN, FMN, DARK GROWN, FLUORESCENCE, LIGHT SENSING, KEYWDS 2 TRANSCRIPTION FACTOR PAS DOMAIN, OCHRONOMAS DANICA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,M.E.KALVAITIS,R.K.ALLEMANN,R.J.MART,L.A.JOHNSON REVDAT 4 24-JAN-24 6I21 1 LINK REVDAT 3 21-AUG-19 6I21 1 REMARK REVDAT 2 19-JUN-19 6I21 1 JRNL REVDAT 1 29-MAY-19 6I21 0 JRNL AUTH M.E.KALVAITIS,L.A.JOHNSON,R.J.MART,P.RIZKALLAH,R.K.ALLEMANN JRNL TITL A NONCANONICAL CHROMOPHORE REVEALS STRUCTURAL REARRANGEMENTS JRNL TITL 2 OF THE LIGHT-OXYGEN-VOLTAGE DOMAIN UPON PHOTOACTIVATION. JRNL REF BIOCHEMISTRY V. 58 2608 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31082213 JRNL DOI 10.1021/ACS.BIOCHEM.9B00255 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 34209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1886 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 1.25000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1231 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1122 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1668 ; 2.006 ; 2.046 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2612 ; 1.044 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 6.054 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;34.594 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 195 ;14.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 176 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1342 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 234 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 564 ; 1.828 ; 1.313 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 563 ; 1.814 ; 1.311 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 712 ; 2.317 ; 1.978 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 713 ; 2.319 ; 1.979 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 666 ; 2.437 ; 1.710 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 665 ; 2.438 ; 1.709 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 954 ; 2.700 ; 2.424 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1582 ; 3.884 ;17.821 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1583 ; 3.883 ;17.819 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2351 ; 2.754 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 80 ;27.908 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2385 ; 8.616 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6500 -34.5578 7.8458 REMARK 3 T TENSOR REMARK 3 T11: 0.0732 T22: 0.0914 REMARK 3 T33: 0.0116 T12: -0.0364 REMARK 3 T13: -0.0068 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.0908 L22: 1.9877 REMARK 3 L33: 2.2232 L12: 1.1951 REMARK 3 L13: 0.6484 L23: -0.1778 REMARK 3 S TENSOR REMARK 3 S11: -0.1129 S12: 0.1876 S13: 0.1398 REMARK 3 S21: -0.2160 S22: 0.0839 S23: 0.0441 REMARK 3 S31: -0.0552 S32: -0.1509 S33: 0.0291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200011317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36515 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 67.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.30 REMARK 200 R MERGE FOR SHELL (I) : 2.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5A8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-25% PEG 2K OR 3K, 100 MM NA ACETATE REMARK 280 OR NA CITRATE, PH 4.5 - 4.9 PROTEIN CONC 10 MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.49533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.99067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.49533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.99067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.49533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 44.99067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.49533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.99067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 247 OE2 GLU A 251 1.82 REMARK 500 C2 EDO A 403 O HOH A 588 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 616 O HOH A 616 11655 0.55 REMARK 500 O HOH A 505 O HOH A 505 4545 2.02 REMARK 500 O HOH A 512 O HOH A 576 4545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 180 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 223 O REMARK 620 2 SER A 223 O 0.0 REMARK 620 3 LEU A 226 O 98.2 98.2 REMARK 620 4 LEU A 226 O 98.2 98.2 0.0 REMARK 620 5 HOH A 533 O 94.7 94.7 78.3 78.3 REMARK 620 6 HOH A 533 O 75.3 75.3 171.7 171.7 107.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 414 DBREF 6I21 A 181 312 UNP C5NSW6 C5NSW6_OCHDN 181 312 SEQADV 6I21 GLY A 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I21 ALA A 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I21 MET A 180 UNP C5NSW6 EXPRESSION TAG SEQRES 1 A 135 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 A 135 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 A 135 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 A 135 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 A 135 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 A 135 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 A 135 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 A 135 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 A 135 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 A 135 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 11 A 135 GLU GLU ASN GLU LYS HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET CL A 407 1 HET MG A 408 1 HET MG A 409 1 HET PEG A 410 7 HET PEG A 411 7 HET PEG A 412 7 HET FMN A 413 31 HET FMN A 414 31 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN EDO ETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 EDO 6(C2 H6 O2) FORMUL 8 CL CL 1- FORMUL 9 MG 2(MG 2+) FORMUL 11 PEG 3(C4 H10 O3) FORMUL 14 FMN 2(C17 H21 N4 O9 P) FORMUL 16 HOH *129(H2 O) HELIX 1 AA1 GLY A 178 ASP A 181 5 4 HELIX 2 AA2 TYR A 182 ALA A 191 1 10 HELIX 3 AA3 SER A 211 GLY A 219 1 9 HELIX 4 AA4 ALA A 221 LEU A 226 1 6 HELIX 5 AA5 ASN A 229 GLN A 234 5 6 HELIX 6 AA6 ASP A 239 GLY A 253 1 15 HELIX 7 AA7 SER A 297 LYS A 312 1 16 SHEET 1 AA1 5 ILE A 207 ALA A 210 0 SHEET 2 AA1 5 ASN A 194 SER A 198 -1 N ILE A 197 O VAL A 208 SHEET 3 AA1 5 VAL A 286 VAL A 296 -1 O GLN A 293 N ASN A 194 SHEET 4 AA1 5 THR A 269 ARG A 280 -1 N LEU A 279 O ASN A 288 SHEET 5 AA1 5 THR A 256 TYR A 263 -1 N ASN A 262 O PHE A 270 LINK O SER A 223 MG MG A 408 1555 1555 2.32 LINK O SER A 223 MG MG A 408 1555 12545 2.31 LINK O LEU A 226 MG MG A 408 1555 1555 2.28 LINK O LEU A 226 MG MG A 408 1555 12545 2.29 LINK MG MG A 408 O HOH A 533 1555 1555 2.55 LINK MG MG A 408 O HOH A 533 1555 12545 2.56 LINK MG MG A 409 O HOH A 539 1555 12545 1.97 SITE 1 AC1 6 TYR A 182 SER A 183 LEU A 184 ASP A 255 SITE 2 AC1 6 EDO A 402 HOH A 535 SITE 1 AC2 5 ALA A 278 LEU A 279 ARG A 280 EDO A 401 SITE 2 AC2 5 HOH A 522 SITE 1 AC3 9 ARG A 228 ASN A 229 PHE A 232 LYS A 265 SITE 2 AC3 9 HOH A 502 HOH A 503 HOH A 506 HOH A 588 SITE 3 AC3 9 HOH A 612 SITE 1 AC4 4 LEU A 222 GLY A 227 PEG A 411 HOH A 530 SITE 1 AC5 2 HOH A 550 HOH A 586 SITE 1 AC6 2 SER A 268 THR A 269 SITE 1 AC7 4 ASN A 205 ASN A 229 FMN A 413 FMN A 414 SITE 1 AC8 3 SER A 223 LEU A 226 HOH A 533 SITE 1 AC9 2 GLU A 224 HOH A 539 SITE 1 AD1 5 ARG A 231 PHE A 232 GLN A 234 HOH A 504 SITE 2 AD1 5 HOH A 568 SITE 1 AD2 8 PRO A 203 ASP A 204 ASP A 266 EDO A 404 SITE 2 AD2 8 HOH A 502 HOH A 512 HOH A 523 HOH A 534 SITE 1 AD3 6 LYS A 186 THR A 190 GLN A 273 TYR A 300 SITE 2 AD3 6 PHE A 304 HOH A 551 SITE 1 AD4 23 VAL A 196 ASN A 205 ASN A 229 CYS A 230 SITE 2 AD4 23 ARG A 231 LEU A 233 GLN A 234 VAL A 243 SITE 3 AD4 23 ARG A 247 LEU A 250 ASN A 262 ASN A 272 SITE 4 AD4 23 LEU A 274 TYR A 289 GLY A 291 GLN A 293 SITE 5 AD4 23 CL A 407 FMN A 414 HOH A 510 HOH A 516 SITE 6 AD4 23 HOH A 524 HOH A 536 HOH A 572 SITE 1 AD5 23 VAL A 196 SER A 198 ASN A 205 ASN A 229 SITE 2 AD5 23 CYS A 230 ARG A 231 GLN A 234 VAL A 243 SITE 3 AD5 23 ARG A 247 LEU A 250 LEU A 260 ASN A 262 SITE 4 AD5 23 ASN A 272 LEU A 274 GLY A 291 GLN A 293 SITE 5 AD5 23 CL A 407 FMN A 413 HOH A 510 HOH A 516 SITE 6 AD5 23 HOH A 524 HOH A 536 HOH A 572 CRYST1 106.389 106.389 67.486 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009399 0.005427 0.000000 0.00000 SCALE2 0.000000 0.010854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014818 0.00000