HEADER TRANSCRIPTION 31-OCT-18 6I25 TITLE FLAVIN ANALOGUE SHEDS LIGHT ON LIGHT-OXYGEN-VOLTAGE DOMAIN MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUREOCHROME1-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROMONAS DANICA; SOURCE 3 ORGANISM_TAXID: 2986; SOURCE 4 GENE: ODAUREO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LOV DOMAIN, FMN, DARK GROWN, FLUORESCENCE, LIGHT SENSING, KEYWDS 2 TRANSCRIPTION FACTOR PAS DOMAIN, OCHRONOMAS DANICA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,M.E.KALVAITIS REVDAT 4 09-OCT-24 6I25 1 REMARK REVDAT 3 24-JAN-24 6I25 1 LINK REVDAT 2 21-AUG-19 6I25 1 REMARK REVDAT 1 19-JUN-19 6I25 0 JRNL AUTH M.E.KALVAITIS,L.A.JOHNSON,R.J.MART,P.RIZKALLAH,R.K.ALLEMANN JRNL TITL A NONCANONICAL CHROMOPHORE REVEALS STRUCTURAL REARRANGEMENTS JRNL TITL 2 OF THE LIGHT-OXYGEN-VOLTAGE DOMAIN UPON PHOTOACTIVATION. JRNL REF BIOCHEMISTRY V. 58 2608 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31082213 JRNL DOI 10.1021/ACS.BIOCHEM.9B00255 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1177 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1187 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1065 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1632 ; 1.697 ; 2.035 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2486 ; 1.029 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 6.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;36.397 ;25.536 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 195 ;16.659 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1330 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 229 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 559 ; 1.418 ; 1.382 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 558 ; 1.412 ; 1.382 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 703 ; 1.882 ; 2.068 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 704 ; 1.884 ; 2.069 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 626 ; 1.580 ; 1.613 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 627 ; 1.580 ; 1.613 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 925 ; 2.032 ; 2.373 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1478 ; 3.510 ;17.575 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1479 ; 3.510 ;17.572 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2248 ; 1.765 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 85 ;28.691 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2291 ; 6.675 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6368 34.5412 7.9457 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.0563 REMARK 3 T33: 0.0093 T12: 0.0034 REMARK 3 T13: -0.0107 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.9291 L22: 2.1116 REMARK 3 L33: 1.5811 L12: 0.8559 REMARK 3 L13: -0.8806 L23: 0.0369 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.1979 S13: -0.0962 REMARK 3 S21: -0.2249 S22: 0.0280 S23: 0.0273 REMARK 3 S31: 0.1085 S32: 0.0007 S33: 0.0194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200011512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 54.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5-3 M NA MALONATE, 0.1 M REMARK 280 TRIS.ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.61967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.23933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.61967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.23933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.61967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 45.23933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.61967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.23933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 402 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 589 O HOH A 618 2.00 REMARK 500 NH2 ARG A 247 OE1 GLU A 251 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 621 O HOH A 621 12565 1.16 REMARK 500 O HOH A 631 O HOH A 631 12564 1.20 REMARK 500 O HOH A 587 O HOH A 587 4565 1.94 REMARK 500 NE2 GLN A 193 NE2 GLN A 193 10555 2.02 REMARK 500 O HOH A 550 O HOH A 619 11455 2.06 REMARK 500 O HOH A 563 O HOH A 615 4565 2.11 REMARK 500 O HOH A 593 O HOH A 615 4565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 223 O REMARK 620 2 SER A 223 O 0.0 REMARK 620 3 LEU A 226 O 96.6 96.6 REMARK 620 4 LEU A 226 O 96.6 96.6 0.0 REMARK 620 5 HOH A 511 O 96.2 96.2 79.7 79.7 REMARK 620 6 HOH A 511 O 74.1 74.1 168.7 168.7 107.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5DD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9O9 A 404 DBREF 6I25 A 181 312 UNP C5NSW6 C5NSW6_OCHDN 181 312 SEQADV 6I25 GLY A 178 UNP C5NSW6 EXPRESSION TAG SEQADV 6I25 ALA A 179 UNP C5NSW6 EXPRESSION TAG SEQADV 6I25 MET A 180 UNP C5NSW6 EXPRESSION TAG SEQRES 1 A 135 GLY ALA MET ASP TYR SER LEU VAL LYS ALA LEU GLN THR SEQRES 2 A 135 ALA GLN GLN ASN PHE VAL ILE SER ASP PRO SER ILE PRO SEQRES 3 A 135 ASP ASN PRO ILE VAL TYR ALA SER GLN GLY PHE LEU THR SEQRES 4 A 135 LEU THR GLY TYR ALA LEU SER GLU VAL LEU GLY ARG ASN SEQRES 5 A 135 CYS ARG PHE LEU GLN GLY PRO GLU THR ASP PRO LYS ALA SEQRES 6 A 135 VAL GLU LYS VAL ARG LYS GLY LEU GLU ARG GLY GLU ASP SEQRES 7 A 135 THR THR VAL VAL LEU LEU ASN TYR ARG LYS ASP GLY SER SEQRES 8 A 135 THR PHE TRP ASN GLN LEU PHE ILE ALA ALA LEU ARG ASP SEQRES 9 A 135 GLY GLU GLY ASN VAL VAL ASN TYR LEU GLY VAL GLN CYS SEQRES 10 A 135 LYS VAL SER GLU ASP TYR ALA LYS ALA PHE LEU LYS ASN SEQRES 11 A 135 GLU GLU ASN GLU LYS HET CL A 401 1 HET MG A 402 1 HET 5DD A 403 31 HET 9O9 A 404 31 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM 5DD [(2~{R},3~{S},4~{S})-5-[(4~{A}~{R})-7,8-DIMETHYL-2,4- HETNAM 2 5DD BIS(OXIDANYLIDENE)-4~{A},5-DIHYDROPYRIMIDO[4,5- HETNAM 3 5DD B]QUINOLIN-10-YL]-2,3,4-TRIS(OXIDANYL)PENTYL] HETNAM 4 5DD DIHYDROGEN PHOSPHATE HETNAM 9O9 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4- HETNAM 2 9O9 DIHYDROPYRIMIDO[4,5-B]QUINOLIN-10(2H)-YL)-5-O- HETNAM 3 9O9 PHOSPHONO-D-RIBITOL FORMUL 2 CL CL 1- FORMUL 3 MG MG 2+ FORMUL 4 5DD C18 H24 N3 O9 P FORMUL 5 9O9 C18 H22 N3 O9 P FORMUL 6 HOH *151(H2 O) HELIX 1 AA1 GLY A 178 ASP A 181 5 4 HELIX 2 AA2 TYR A 182 ALA A 191 1 10 HELIX 3 AA3 SER A 211 GLY A 219 1 9 HELIX 4 AA4 ALA A 221 LEU A 226 1 6 HELIX 5 AA5 ASN A 229 GLN A 234 5 6 HELIX 6 AA6 ASP A 239 GLY A 253 1 15 HELIX 7 AA7 SER A 297 LYS A 312 1 16 SHEET 1 AA1 5 ILE A 207 ALA A 210 0 SHEET 2 AA1 5 ASN A 194 SER A 198 -1 N ILE A 197 O VAL A 208 SHEET 3 AA1 5 VAL A 286 VAL A 296 -1 O GLY A 291 N VAL A 196 SHEET 4 AA1 5 THR A 269 ARG A 280 -1 N GLN A 273 O CYS A 294 SHEET 5 AA1 5 THR A 256 TYR A 263 -1 N VAL A 258 O LEU A 274 LINK SG BCYS A 230 C4AB5DD A 403 1555 1555 1.84 LINK O SER A 223 MG MG A 402 1555 1555 2.26 LINK O SER A 223 MG MG A 402 1555 12565 2.26 LINK O LEU A 226 MG MG A 402 1555 1555 2.24 LINK O LEU A 226 MG MG A 402 1555 12565 2.24 LINK MG MG A 402 O HOH A 511 1555 1555 2.61 LINK MG MG A 402 O HOH A 511 1555 12565 2.61 SITE 1 AC1 5 ASN A 205 ASN A 229 5DD A 403 9O9 A 404 SITE 2 AC1 5 HOH A 543 SITE 1 AC2 3 SER A 223 LEU A 226 HOH A 511 SITE 1 AC3 24 VAL A 196 SER A 198 ASN A 205 PHE A 214 SITE 2 AC3 24 ASN A 229 CYS A 230 ARG A 231 LEU A 233 SITE 3 AC3 24 GLN A 234 VAL A 243 VAL A 246 LEU A 250 SITE 4 AC3 24 ASN A 262 ASN A 272 LEU A 274 GLY A 291 SITE 5 AC3 24 GLN A 293 CL A 401 9O9 A 404 HOH A 502 SITE 6 AC3 24 HOH A 525 HOH A 543 HOH A 559 HOH A 593 SITE 1 AC4 25 VAL A 196 SER A 198 ASN A 205 ASN A 229 SITE 2 AC4 25 CYS A 230 ARG A 231 GLN A 234 VAL A 243 SITE 3 AC4 25 ARG A 247 LEU A 250 LEU A 260 ASN A 262 SITE 4 AC4 25 ASN A 272 LEU A 274 ILE A 276 TYR A 289 SITE 5 AC4 25 GLY A 291 GLN A 293 CL A 401 5DD A 403 SITE 6 AC4 25 HOH A 502 HOH A 525 HOH A 543 HOH A 559 SITE 7 AC4 25 HOH A 593 CRYST1 106.287 106.287 67.859 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009408 0.005432 0.000000 0.00000 SCALE2 0.000000 0.010864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014736 0.00000