HEADER PROTEIN FIBRIL 01-NOV-18 6I2O TITLE SOLUTION NMR STRUCTURE OF PILE1 FROM STREPTOCOCCUS SANGUINIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV PILIN PILE1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SANGUINIS; SOURCE 3 ORGANISM_TAXID: 1305; SOURCE 4 GENE: PILE1, SSV_2241; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH1; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 536056 KEYWDS TYPE IV PILIN, PILIN, PILUS, PROTEIN FIBRIL EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.L.BERRY,Y.XU REVDAT 4 15-MAY-24 6I2O 1 REMARK REVDAT 3 08-MAY-19 6I2O 1 JRNL REVDAT 2 20-MAR-19 6I2O 1 JRNL REVDAT 1 13-MAR-19 6I2O 0 JRNL AUTH J.L.BERRY,I.GURUNG,J.H.ANONSEN,I.SPIELMAN,E.HARPER, JRNL AUTH 2 A.M.J.HALL,V.J.GOOSENS,C.RAYNAUD,M.KOOMEY,N.BIAIS, JRNL AUTH 3 S.MATTHEWS,V.PELICIC JRNL TITL GLOBAL BIOCHEMICAL AND STRUCTURAL ANALYSIS OF THE TYPE IV JRNL TITL 2 PILUS FROM THE GRAM-POSITIVE BACTERIUMSTREPTOCOCCUS JRNL TITL 3 SANGUINIS. JRNL REF J.BIOL.CHEM. V. 294 6796 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30837269 JRNL DOI 10.1074/JBC.RA118.006917 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200011735. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 750 NM [U-13C; U-15N] PILE1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HBHA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D CBCA(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 35 HG1 THR A 37 1.58 REMARK 500 O GLN A 7 H ARG A 11 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 TYR A 29 CE1 TYR A 29 CZ -0.170 REMARK 500 2 TYR A 29 CZ TYR A 29 CE2 0.169 REMARK 500 4 TYR A 29 CE1 TYR A 29 CZ -0.177 REMARK 500 4 TYR A 29 CZ TYR A 29 CE2 0.171 REMARK 500 9 TYR A 29 CE1 TYR A 29 CZ -0.158 REMARK 500 9 TYR A 29 CZ TYR A 29 CE2 0.149 REMARK 500 10 TYR A 29 CE1 TYR A 29 CZ -0.177 REMARK 500 10 TYR A 29 CZ TYR A 29 CE2 0.175 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 38 66.95 -156.88 REMARK 500 1 ASN A 54 94.43 -43.20 REMARK 500 1 LYS A 56 -70.03 -134.20 REMARK 500 1 SER A 76 -43.13 69.37 REMARK 500 1 PRO A 78 105.41 -50.53 REMARK 500 1 ALA A 81 43.40 -84.76 REMARK 500 1 HIS A 89 56.53 71.61 REMARK 500 1 VAL A 115 51.53 -115.66 REMARK 500 2 ASN A 38 62.94 -159.82 REMARK 500 2 PRO A 39 172.64 -59.12 REMARK 500 2 SER A 52 -40.29 -148.25 REMARK 500 2 ASN A 54 12.46 56.06 REMARK 500 2 LYS A 56 -67.43 -165.26 REMARK 500 2 SER A 76 -41.33 71.89 REMARK 500 2 PRO A 78 105.09 -49.29 REMARK 500 2 HIS A 89 52.69 73.18 REMARK 500 3 ASN A 38 64.67 -158.09 REMARK 500 3 SER A 52 -40.85 -147.52 REMARK 500 3 ASN A 54 11.62 -160.29 REMARK 500 3 LYS A 56 -63.97 -167.92 REMARK 500 3 SER A 74 77.66 58.91 REMARK 500 3 SER A 76 -44.00 69.27 REMARK 500 3 PRO A 78 104.48 -50.82 REMARK 500 3 ALA A 81 41.97 -87.81 REMARK 500 3 HIS A 89 48.89 72.55 REMARK 500 3 SER A 117 94.37 -61.58 REMARK 500 4 ASN A 38 62.57 -161.75 REMARK 500 4 PRO A 39 177.26 -58.08 REMARK 500 4 SER A 40 -176.27 -68.48 REMARK 500 4 ASN A 54 -64.93 59.38 REMARK 500 4 LYS A 56 -40.07 -165.45 REMARK 500 4 SER A 74 88.02 60.86 REMARK 500 4 SER A 76 -42.48 72.03 REMARK 500 4 PRO A 78 105.82 -51.45 REMARK 500 4 HIS A 89 56.41 72.93 REMARK 500 4 ALA A 112 71.70 47.63 REMARK 500 4 ASN A 116 43.78 -85.89 REMARK 500 5 ASN A 38 63.70 -154.54 REMARK 500 5 ASN A 54 -73.45 29.67 REMARK 500 5 ALA A 55 155.03 -45.16 REMARK 500 5 LYS A 56 -54.77 -149.50 REMARK 500 5 SER A 74 88.75 60.65 REMARK 500 5 SER A 76 -42.41 70.33 REMARK 500 5 PRO A 78 107.22 -50.11 REMARK 500 5 HIS A 89 49.00 70.12 REMARK 500 6 ASN A 38 64.74 -159.98 REMARK 500 6 SER A 52 -32.65 -151.74 REMARK 500 6 ASN A 54 34.37 -155.17 REMARK 500 6 LYS A 56 -46.12 -136.64 REMARK 500 6 SER A 76 -38.39 72.52 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34325 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF PILE1 FROM STREPTOCOCCUS SANGUINIS DBREF1 6I2O A 6 118 UNP A0A0B7GU52_STRSA DBREF2 6I2O A A0A0B7GU52 45 157 SEQADV 6I2O HIS A 6 UNP A0A0B7GU5 PHE 45 CONFLICT SEQRES 1 A 113 HIS GLN ASP ASN ALA ARG LYS SER ARG ILE GLN SER GLU SEQRES 2 A 113 HIS ARG GLU LEU VAL SER ALA ILE GLN SER TYR ILE GLY SEQRES 3 A 113 ALA GLN ASP ASP PRO THR ASN PRO SER GLU ILE THR LEU SEQRES 4 A 113 ALA LYS LEU ALA PRO TYR MET SER LYS ASN ALA LYS ASN SEQRES 5 A 113 GLU ASP GLY ILE VAL ASN SER LEU ALA LYS ASP LYS SER SEQRES 6 A 113 GLY ASN SER SER THR SER ALA PRO GLY SER ALA HIS GLN SEQRES 7 A 113 ILE ASP THR THR ASN HIS LYS LEU ILE SER THR PHE THR SEQRES 8 A 113 PRO SER ASN GLY GLY GLN ALA THR VAL LEU THR TYR ASP SEQRES 9 A 113 TRP SER ALA ASN GLY VAL ASN SER ASN HELIX 1 AA1 HIS A 6 GLY A 31 1 26 HELIX 2 AA2 THR A 43 ALA A 48 1 6 HELIX 3 AA3 PRO A 49 MET A 51 5 3 HELIX 4 AA4 ASN A 57 LEU A 65 1 9 SHEET 1 AA1 2 LYS A 90 LEU A 91 0 SHEET 2 AA1 2 TYR A 108 ASP A 109 -1 O TYR A 108 N LEU A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1