HEADER PROTEIN BINDING 02-NOV-18 6I2V TITLE PILOTIN FROM VIBRIO VULNIFICUS TYPE 2 SECRETION SYSTEM, EPSS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 GENE: CRN52_08940, CRN59_22290, FORC17_1995, FORC36_0970; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P4-MBP KEYWDS PILOTIN, T2SS, V.VULNIFICUS, OUTER-MEMBRANE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.P.HOWARD,L.ESTROZI,Q.BERTRAND,C.CONTRERAS-MARTEL,T.STROZEN,V.JOB, AUTHOR 2 A.MARTINS,D.FENEL,G.SCHOEHN,A.DESSEN REVDAT 4 13-NOV-24 6I2V 1 REMARK REVDAT 3 24-JAN-24 6I2V 1 REMARK REVDAT 2 28-AUG-19 6I2V 1 JRNL REMARK REVDAT 1 10-APR-19 6I2V 0 JRNL AUTH S.P.HOWARD,L.F.ESTROZI,Q.BERTRAND,C.CONTRERAS-MARTEL, JRNL AUTH 2 T.STROZEN,V.JOB,A.MARTINS,D.FENEL,G.SCHOEHN,A.DESSEN JRNL TITL STRUCTURE AND ASSEMBLY OF PILOTIN-DEPENDENT AND -INDEPENDENT JRNL TITL 2 SECRETINS OF THE TYPE II SECRETION SYSTEM. JRNL REF PLOS PATHOG. V. 15 07731 2019 JRNL REFN ESSN 1553-7374 JRNL PMID 31083688 JRNL DOI 10.1371/JOURNAL.PPAT.1007731 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 13.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : 2.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.128 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 968 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 941 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1298 ; 1.397 ; 1.670 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2199 ; 1.304 ; 1.627 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 127 ; 6.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;33.979 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 189 ;13.749 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 7.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 128 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1016 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 165 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 458 ; 1.149 ; 1.498 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 456 ; 0.987 ; 1.487 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 574 ; 1.350 ; 2.221 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 575 ; 1.350 ; 2.223 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 510 ; 2.628 ; 2.028 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 491 ; 2.423 ; 1.908 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 686 ; 2.756 ; 2.666 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1016 ; 6.149 ;19.774 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1000 ; 6.099 ;19.113 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5600 6.5594 10.7469 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.2193 REMARK 3 T33: 0.1722 T12: 0.0526 REMARK 3 T13: 0.0402 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 9.5719 L22: 16.7233 REMARK 3 L33: 13.4667 L12: 0.8948 REMARK 3 L13: -0.3078 L23: -3.3388 REMARK 3 S TENSOR REMARK 3 S11: -0.1639 S12: 1.2295 S13: 0.4437 REMARK 3 S21: -0.9538 S22: -0.0103 S23: -0.3610 REMARK 3 S31: -0.2277 S32: 0.2622 S33: 0.1742 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9496 4.7931 21.4183 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.0555 REMARK 3 T33: 0.1339 T12: 0.0141 REMARK 3 T13: -0.0008 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 4.4115 L22: 4.8853 REMARK 3 L33: 11.7954 L12: -0.2777 REMARK 3 L13: -0.9203 L23: -4.8675 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.1825 S13: 0.2048 REMARK 3 S21: -0.1256 S22: -0.2520 S23: -0.3519 REMARK 3 S31: -0.1751 S32: 0.4103 S33: 0.2087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0782 2.9634 35.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.1610 REMARK 3 T33: 0.0792 T12: -0.0058 REMARK 3 T13: -0.0274 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 10.3690 L22: 1.7460 REMARK 3 L33: 5.4683 L12: 4.1269 REMARK 3 L13: -6.2695 L23: -2.2515 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: -0.4233 S13: 0.0397 REMARK 3 S21: 0.0517 S22: -0.0393 S23: -0.0154 REMARK 3 S31: -0.0776 S32: 0.4583 S33: -0.1051 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3969 10.6753 40.6694 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1001 REMARK 3 T33: 0.1914 T12: -0.0124 REMARK 3 T13: 0.0669 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 8.1938 L22: 9.5600 REMARK 3 L33: 11.6922 L12: -7.0817 REMARK 3 L13: 5.9476 L23: -0.3563 REMARK 3 S TENSOR REMARK 3 S11: 0.0874 S12: 0.1669 S13: 0.4892 REMARK 3 S21: -0.2221 S22: 0.2343 S23: -0.6867 REMARK 3 S31: -0.2727 S32: 0.5757 S33: -0.3217 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4464 3.0791 30.1679 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.0585 REMARK 3 T33: 0.0944 T12: -0.0066 REMARK 3 T13: -0.0048 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.8470 L22: 2.7278 REMARK 3 L33: 11.2581 L12: -1.1458 REMARK 3 L13: -2.8356 L23: 3.9798 REMARK 3 S TENSOR REMARK 3 S11: -0.1701 S12: 0.0422 S13: -0.0244 REMARK 3 S21: 0.2287 S22: 0.0686 S23: 0.1589 REMARK 3 S31: 0.5383 S32: -0.3027 S33: 0.1015 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9628 6.2671 24.3532 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0522 REMARK 3 T33: 0.1143 T12: 0.0074 REMARK 3 T13: -0.0309 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 10.2506 L22: 3.2425 REMARK 3 L33: 16.7878 L12: 1.7800 REMARK 3 L13: -10.2175 L23: -2.2420 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: 0.1959 S13: -0.1558 REMARK 3 S21: -0.1017 S22: 0.0523 S23: 0.0071 REMARK 3 S31: 0.2864 S32: -0.2457 S33: 0.0749 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2599 12.2879 38.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.0509 REMARK 3 T33: 0.0686 T12: 0.0193 REMARK 3 T13: 0.0684 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.2885 L22: 1.2731 REMARK 3 L33: 3.2680 L12: 0.7562 REMARK 3 L13: -0.4903 L23: -1.8859 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: 0.0202 S13: 0.1585 REMARK 3 S21: 0.1100 S22: 0.0510 S23: 0.1334 REMARK 3 S31: -0.1418 S32: -0.0782 S33: -0.1296 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7243 20.3792 31.9625 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0685 REMARK 3 T33: 0.0713 T12: 0.0103 REMARK 3 T13: 0.0172 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 10.3422 L22: 5.7624 REMARK 3 L33: 4.7947 L12: 4.3819 REMARK 3 L13: -2.0212 L23: -4.1025 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.1995 S13: 0.0591 REMARK 3 S21: 0.3802 S22: -0.0078 S23: -0.1602 REMARK 3 S31: -0.2309 S32: 0.0505 S33: 0.0775 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6310 19.5920 30.9882 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1091 REMARK 3 T33: 0.0767 T12: 0.0082 REMARK 3 T13: 0.0076 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 14.9841 L22: 8.9522 REMARK 3 L33: 5.0166 L12: 2.1891 REMARK 3 L13: -1.9954 L23: -3.2996 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: -0.7853 S13: 0.3486 REMARK 3 S21: 0.6056 S22: 0.0776 S23: 0.0383 REMARK 3 S31: -0.1841 S32: -0.1901 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2724 16.1806 24.4368 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.0600 REMARK 3 T33: 0.1262 T12: 0.0081 REMARK 3 T13: 0.0057 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 1.4620 L22: 2.1751 REMARK 3 L33: 4.3669 L12: 0.8415 REMARK 3 L13: 0.7136 L23: 0.3653 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: -0.0553 S13: -0.0931 REMARK 3 S21: 0.0056 S22: -0.0749 S23: -0.2888 REMARK 3 S31: 0.1680 S32: 0.0231 S33: 0.0261 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1918 8.1560 28.7079 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0725 REMARK 3 T33: 0.0825 T12: -0.0039 REMARK 3 T13: -0.0079 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 3.8665 L22: 1.6409 REMARK 3 L33: 1.7498 L12: 1.2835 REMARK 3 L13: -2.5969 L23: -0.7822 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.2094 S13: 0.0275 REMARK 3 S21: 0.0488 S22: 0.0487 S23: 0.0826 REMARK 3 S31: 0.0260 S32: -0.1464 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9960 19.5914 21.8918 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0497 REMARK 3 T33: 0.1291 T12: 0.0139 REMARK 3 T13: 0.0097 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 3.0908 L22: 1.6323 REMARK 3 L33: 1.2169 L12: 2.0491 REMARK 3 L13: -0.7147 L23: -0.9222 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: 0.1193 S13: 0.2968 REMARK 3 S21: -0.0350 S22: 0.0379 S23: 0.1956 REMARK 3 S31: -0.0785 S32: -0.0029 S33: 0.0036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 45.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.15000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: 4FTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL PH 7.5 1.9M AMONIUM REMARK 280 SULFATE 2.5% (V/V) PEG400, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.91500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.39500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.91500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.39500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.91500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.39500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.91500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -249.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 90.79000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 90.79000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 212 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 388 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 5 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 64 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 43 -125.56 48.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 204 REMARK 610 1PE A 205 REMARK 610 1PE A 206 REMARK 610 1PE A 208 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO3 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 213 DBREF1 6I2V A 3 114 UNP A0A1V8MYF4_VIBVL DBREF2 6I2V A A0A1V8MYF4 19 130 SEQADV 6I2V GLY A 1 UNP A0A1V8MYF CLONING ARTIFACT SEQADV 6I2V SER A 2 UNP A0A1V8MYF CLONING ARTIFACT SEQRES 1 A 114 GLY SER SER SER ASN GLY GLU LYS GLU ARG GLN LEU GLU SEQRES 2 A 114 LEU MET ALA SER ASN ARG ALA GLY VAL LEU SER ALA GLY SEQRES 3 A 114 LEU PRO ILE GLU TYR GLY PRO LEU LYS VAL MET ARG ILE SEQRES 4 A 114 SER SER SER LYS ASN ILE VAL GLU ILE MET MET ILE TYR SEQRES 5 A 114 ASN THR ASP ALA THR GLY ALA LYS PRO THR GLN GLU LEU SEQRES 6 A 114 LEU SER THR SER VAL SER LYS TYR CYS GLU ASP ALA THR SEQRES 7 A 114 VAL ARG ASN GLN LEU ASP MET GLY LEU MET TYR ARG ILE SEQRES 8 A 114 LYS ILE ARG ASN SER ARG GLY GLN LEU ILE ILE ASP GLU SEQRES 9 A 114 MET VAL THR ALA ALA SER CYS GLN PRO GLN HET 1PE A 201 16 HET EDO A 202 4 HET SO3 A 203 4 HET 1PE A 204 4 HET 1PE A 205 3 HET 1PE A 206 4 HET EDO A 207 4 HET 1PE A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET SO4 A 211 5 HET SO4 A 212 5 HET SO4 A 213 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO3 SULFITE ION HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 1PE 5(C10 H22 O6) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 SO3 O3 S 2- FORMUL 10 SO4 5(O4 S 2-) FORMUL 15 HOH *95(H2 O) HELIX 1 AA1 ASN A 5 ALA A 25 1 21 HELIX 2 AA2 ASN A 53 GLY A 58 1 6 HELIX 3 AA3 PRO A 61 ASP A 76 1 16 HELIX 4 AA4 ASP A 76 GLY A 86 1 11 HELIX 5 AA5 THR A 107 GLN A 112 5 6 SHEET 1 AA1 5 ILE A 29 TYR A 31 0 SHEET 2 AA1 5 LEU A 34 SER A 42 -1 O VAL A 36 N ILE A 29 SHEET 3 AA1 5 ILE A 45 TYR A 52 -1 O GLU A 47 N SER A 40 SHEET 4 AA1 5 MET A 88 ARG A 94 1 O ARG A 94 N TYR A 52 SHEET 5 AA1 5 LEU A 100 VAL A 106 -1 O VAL A 106 N TYR A 89 SSBOND 1 CYS A 74 CYS A 111 1555 1555 2.04 CISPEP 1 LEU A 27 PRO A 28 0 -4.37 SITE 1 AC1 7 ARG A 80 ARG A 90 ASP A 103 GLU A 104 SITE 2 AC1 7 MET A 105 THR A 107 HOH A 345 SITE 1 AC2 5 VAL A 70 ASN A 81 ASP A 84 MET A 105 SITE 2 AC2 5 SER A 110 SITE 1 AC3 4 VAL A 70 SER A 110 HOH A 337 HOH A 356 SITE 1 AC4 4 ILE A 29 TYR A 31 TYR A 73 HOH A 317 SITE 1 AC5 3 LEU A 34 THR A 68 SER A 69 SITE 1 AC6 3 LYS A 72 ASP A 76 HOH A 317 SITE 1 AC7 2 TYR A 31 ALA A 56 SITE 1 AC8 3 GLY A 26 ARG A 97 HOH A 383 SITE 1 AC9 6 ARG A 19 THR A 78 HOH A 303 HOH A 342 SITE 2 AC9 6 HOH A 354 HOH A 363 SITE 1 AD1 6 SER A 40 ARG A 94 HOH A 321 HOH A 325 SITE 2 AD1 6 HOH A 332 HOH A 366 SITE 1 AD2 5 ARG A 10 GLN A 11 SER A 42 LYS A 43 SITE 2 AD2 5 HOH A 357 SITE 1 AD3 3 ARG A 38 MET A 49 ARG A 94 SITE 1 AD4 3 ARG A 90 HOH A 306 HOH A 315 CRYST1 35.830 83.210 90.790 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011014 0.00000