HEADER CYTOKINE 12-NOV-18 6I50 TITLE STRUCTURE OF EIGER TNF FROM S. FRUGIPERDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SFRICE_029225; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPODOPTERA FRUGIPERDA; SOURCE 3 ORGANISM_COMMON: FALL ARMYWORM; SOURCE 4 ORGANISM_TAXID: 7108; SOURCE 5 CELL_LINE: SF9 KEYWDS TNF, TUMOUR NECROSIS FACTOR, APOPTOSIS, ARTHROPOD, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR M.BERTINELLI,G.C.PAESEN,J.M.GRIMES,M.RENNER REVDAT 4 24-JAN-24 6I50 1 REMARK REVDAT 3 20-NOV-19 6I50 1 JRNL REVDAT 2 28-AUG-19 6I50 1 JRNL REVDAT 1 14-AUG-19 6I50 0 JRNL AUTH M.BERTINELLI,G.C.PAESEN,J.M.GRIMES,M.RENNER JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF ARTHROPOD EIGER TNF JRNL TITL 2 SUGGESTS A MODE OF RECEPTOR ENGAGEMENT AND ALTERED SURFACE JRNL TITL 3 CHARGE WITHIN ENDOSOMES. JRNL REF COMMUN BIOL V. 2 293 2019 JRNL REFN ESSN 2399-3642 JRNL PMID 31396573 JRNL DOI 10.1038/S42003-019-0541-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.BERTINELLI,G.C.PAESEN,J.M.GRIMES,M.RENNER REMARK 1 TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF ARTHROPOD EIGER TNF REMARK 1 TITL 2 SUGGESTS A MODE OF RECEPTOR ENGAGEMENT AND ALTERED SURFACE REMARK 1 TITL 3 CHARGE WITHIN ENDOSOMES. REMARK 1 REF COMMUN BIOL V. 2 293 2019 REMARK 1 REFN ESSN 2399-3642 REMARK 1 PMID 31396573 REMARK 1 DOI 10.1038/S42003-019-0541-0 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 17652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3839 - 3.0708 1.00 2886 140 0.1324 0.1311 REMARK 3 2 3.0708 - 2.4374 1.00 2804 210 0.1553 0.2014 REMARK 3 3 2.4374 - 2.1293 1.00 2893 122 0.1547 0.2012 REMARK 3 4 2.1293 - 1.9346 1.00 2860 147 0.1611 0.2010 REMARK 3 5 1.9346 - 1.7960 0.98 2808 146 0.1892 0.2182 REMARK 3 6 1.7960 - 1.6901 0.87 2519 117 0.2369 0.2524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1279 REMARK 3 ANGLE : 0.766 1750 REMARK 3 CHIRALITY : 0.054 193 REMARK 3 PLANARITY : 0.005 227 REMARK 3 DIHEDRAL : 11.791 748 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1796 4.7010 28.8986 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.1031 REMARK 3 T33: 0.1089 T12: 0.0162 REMARK 3 T13: -0.0057 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 8.5003 L22: 5.3559 REMARK 3 L33: 9.6299 L12: 1.0392 REMARK 3 L13: -2.4536 L23: -2.9469 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.6895 S13: 0.0139 REMARK 3 S21: -0.2062 S22: 0.0132 S23: -0.0121 REMARK 3 S31: -0.1525 S32: -0.2461 S33: 0.0402 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8310 -2.6864 48.8222 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.2502 REMARK 3 T33: 0.2564 T12: 0.0624 REMARK 3 T13: -0.0072 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 2.0340 L22: 6.4666 REMARK 3 L33: 7.9552 L12: -0.1312 REMARK 3 L13: -0.4599 L23: -2.7108 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.6183 S13: -0.4245 REMARK 3 S21: 0.1150 S22: 0.0285 S23: -0.3607 REMARK 3 S31: 0.7920 S32: 0.0739 S33: 0.0159 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4011 -0.4193 30.6842 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.0466 REMARK 3 T33: 0.1315 T12: 0.0191 REMARK 3 T13: 0.0031 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 4.9827 L22: 0.6729 REMARK 3 L33: 2.7864 L12: 1.2756 REMARK 3 L13: -0.8121 L23: 0.6807 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.0031 S13: -0.4041 REMARK 3 S21: -0.0286 S22: -0.0406 S23: -0.0944 REMARK 3 S31: 0.2457 S32: 0.0318 S33: 0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7883 8.7847 45.6309 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0561 REMARK 3 T33: 0.0767 T12: 0.0067 REMARK 3 T13: 0.0031 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.2586 L22: 0.9580 REMARK 3 L33: 4.1595 L12: 0.1697 REMARK 3 L13: -1.0729 L23: -0.6999 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.1333 S13: -0.0352 REMARK 3 S21: 0.1489 S22: 0.0030 S23: -0.0002 REMARK 3 S31: -0.0881 S32: 0.1308 S33: -0.0318 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0370 10.7567 41.9963 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.1061 REMARK 3 T33: 0.1420 T12: -0.0138 REMARK 3 T13: -0.0100 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 9.1765 L22: 5.2012 REMARK 3 L33: 7.2460 L12: -5.9640 REMARK 3 L13: -5.7404 L23: 5.3331 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: -0.0917 S13: 0.1117 REMARK 3 S21: -0.0548 S22: 0.0782 S23: -0.3299 REMARK 3 S31: -0.1068 S32: 0.4075 S33: -0.0927 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6527 9.1912 66.6782 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.2831 REMARK 3 T33: 0.1698 T12: -0.0019 REMARK 3 T13: 0.0007 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 3.3946 L22: 3.5496 REMARK 3 L33: 8.6837 L12: -1.9013 REMARK 3 L13: -0.4167 L23: -4.4078 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: 0.4798 S13: 0.1493 REMARK 3 S21: 0.3609 S22: 0.1134 S23: -0.0082 REMARK 3 S31: -0.5617 S32: -0.4517 S33: -0.2331 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0806 12.4140 42.9607 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.1115 REMARK 3 T33: 0.0922 T12: -0.0105 REMARK 3 T13: -0.0125 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.9789 L22: 2.0944 REMARK 3 L33: 5.4764 L12: 0.8845 REMARK 3 L13: -3.2720 L23: -1.6113 REMARK 3 S TENSOR REMARK 3 S11: 0.1303 S12: -0.2457 S13: 0.0359 REMARK 3 S21: 0.1222 S22: -0.0381 S23: 0.0041 REMARK 3 S31: -0.2195 S32: 0.2594 S33: -0.0749 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8212 5.3039 37.3057 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.1123 REMARK 3 T33: 0.1513 T12: 0.0119 REMARK 3 T13: 0.0118 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.8275 L22: 1.4091 REMARK 3 L33: 2.0328 L12: -1.2813 REMARK 3 L13: -1.4434 L23: 0.7433 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.1247 S13: 0.0026 REMARK 3 S21: -0.0104 S22: 0.1324 S23: -0.1372 REMARK 3 S31: 0.2927 S32: 0.3211 S33: -0.1872 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3544 4.5253 43.8875 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.0832 REMARK 3 T33: 0.0910 T12: 0.0420 REMARK 3 T13: 0.0011 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.9062 L22: 3.3622 REMARK 3 L33: 3.2524 L12: 0.9191 REMARK 3 L13: -1.2050 L23: -1.2015 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.2146 S13: -0.0762 REMARK 3 S21: 0.1680 S22: 0.0763 S23: 0.0268 REMARK 3 S31: 0.3405 S32: 0.0461 S33: -0.0598 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4664 17.7992 26.4622 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.3012 REMARK 3 T33: 0.2821 T12: 0.0309 REMARK 3 T13: -0.0021 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.0106 L22: 0.7475 REMARK 3 L33: 7.6072 L12: 3.6318 REMARK 3 L13: 2.0532 L23: 2.4425 REMARK 3 S TENSOR REMARK 3 S11: -0.2762 S12: 1.5374 S13: -0.0801 REMARK 3 S21: -0.0416 S22: 0.4966 S23: -0.2599 REMARK 3 S31: 0.0205 S32: 1.0910 S33: -0.2194 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 47.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U5Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M SODIUM NITRATE, 0.09 M SODIUM REMARK 280 PHOSPHATE DIBASIC, 0.09M AMMONIUM SULFATE, 0.1 M IMIDAZOLE/MES, REMARK 280 PH 6.5, 30% ETHYLENE GLYCOL/PEG8K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.61100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.94122 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.36533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 27.61100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 15.94122 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.36533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 27.61100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 15.94122 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.36533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.88244 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 94.73067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.88244 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 94.73067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.88244 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 94.73067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -27.61100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 47.82365 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.22200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 326 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 361 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 14 REMARK 465 LEU A 15 REMARK 465 ASN A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 HIS A 20 REMARK 465 ASP A 21 REMARK 465 HIS A 22 REMARK 465 TYR A 23 REMARK 465 LYS A 24 REMARK 465 GLY A 25 REMARK 465 ASN A 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 290 O HOH A 343 1.86 REMARK 500 O HOH A 330 O HOH A 342 2.08 REMARK 500 O HOH A 336 O HOH A 347 2.11 REMARK 500 O HOH A 304 O HOH A 355 2.13 REMARK 500 O HOH A 321 O HOH A 354 2.14 REMARK 500 O HOH A 348 O HOH A 362 2.15 REMARK 500 OD1 ASP A 143 O HOH A 201 2.17 REMARK 500 O HOH A 222 O HOH A 289 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 242 O HOH A 351 3555 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 39 44.53 -99.85 REMARK 500 ASP A 143 78.03 57.36 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6I50 A 1 170 UNP A0A2H1VTZ0_SPOFR DBREF2 6I50 A A0A2H1VTZ0 37 206 SEQRES 1 A 170 ARG PRO PHE ILE ALA ALA HIS PHE HIS GLY ASN THR SER SEQRES 2 A 170 HIS LEU ASN SER ALA ILE HIS ASP HIS TYR LYS GLY ASN SEQRES 3 A 170 GLY LEU VAL ARG VAL SER HIS ASP ALA PRO HIS ASP VAL SEQRES 4 A 170 TRP TYR PRO ALA PRO TRP THR VAL ALA SER PRO HIS PRO SEQRES 5 A 170 ARG PRO THR LEU THR ARG THR GLY HIS VAL HIS VAL HIS SEQRES 6 A 170 HIS THR GLY VAL TYR LEU VAL TYR VAL GLN ILE TYR TYR SEQRES 7 A 170 LEU ASP SER HIS ASP THR ILE SER TRP VAL LEU HIS ARG SEQRES 8 A 170 THR ASN ALA ASP ILE GLU GLY ARG GLU THR LEU LEU GLN SEQRES 9 A 170 CYS ALA GLN SER SER TYR SER THR GLU PRO ILE ASP LYS SEQRES 10 A 170 PRO ASN SER CYS PHE SER ALA ALA ALA LEU PHE LEU LYS SEQRES 11 A 170 ALA GLY ASP ARG LEU ALA VAL ARG ASN THR ALA GLY ASP SEQRES 12 A 170 ARG HIS SER LEU MET GLN PRO GLU LYS SER PHE ILE GLY SEQRES 13 A 170 LEU VAL LYS LEU ALA ASP ALA GLU ASP PRO THR GLN GLU SEQRES 14 A 170 LEU FORMUL 2 HOH *175(H2 O) HELIX 1 AA1 ALA A 43 ALA A 48 1 6 SHEET 1 AA1 5 TRP A 40 PRO A 42 0 SHEET 2 AA1 5 ALA A 5 GLY A 10 -1 N HIS A 9 O TYR A 41 SHEET 3 AA1 5 PHE A 154 ALA A 161 -1 O ILE A 155 N PHE A 8 SHEET 4 AA1 5 GLY A 68 ASP A 80 -1 N VAL A 69 O LEU A 160 SHEET 5 AA1 5 LYS A 117 LEU A 129 -1 O LEU A 127 N TYR A 70 SHEET 1 AA2 2 LEU A 28 VAL A 31 0 SHEET 2 AA2 2 ARG A 144 LEU A 147 -1 O SER A 146 N VAL A 29 SHEET 1 AA3 5 THR A 55 LEU A 56 0 SHEET 2 AA3 5 VAL A 62 HIS A 63 -1 O HIS A 63 N THR A 55 SHEET 3 AA3 5 ARG A 134 ASN A 139 -1 O LEU A 135 N VAL A 62 SHEET 4 AA3 5 THR A 84 THR A 92 -1 N HIS A 90 O ALA A 136 SHEET 5 AA3 5 GLU A 100 SER A 108 -1 O GLU A 100 N ARG A 91 SSBOND 1 CYS A 105 CYS A 121 1555 1555 2.05 CRYST1 55.222 55.222 142.096 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018109 0.010455 0.000000 0.00000 SCALE2 0.000000 0.020910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007037 0.00000