HEADER HYDROLASE 14-NOV-18 6I5S TITLE AH, BOTTROMYCIN AMIDOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTTROMYCIN AMIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MODIFIED RESIDUE: KCX; LYSINE CARBOXYLIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PURPUREUS; SOURCE 3 ORGANISM_TAXID: 1951; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GATEKEEPER ENZYME, BOTTROMYCIN, AMIDOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,A.SIKANDAR REVDAT 1 25-SEP-19 6I5S 0 JRNL AUTH A.SIKANDAR,L.FRANZ,O.MELSE,I.ANTES,J.KOEHNKE JRNL TITL THIAZOLINE-SPECIFIC AMIDOHYDROLASE PURAH IS THE GATEKEEPER JRNL TITL 2 OF BOTTROMYCIN BIOSYNTHESIS. JRNL REF J.AM.CHEM.SOC. V. 141 9748 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 31192589 JRNL DOI 10.1021/JACS.8B12231 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 48812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.0719 - 4.4476 0.94 2793 135 0.1636 0.1545 REMARK 3 2 4.4476 - 3.5304 0.95 2723 125 0.1260 0.1505 REMARK 3 3 3.5304 - 3.0842 0.96 2670 164 0.1453 0.1768 REMARK 3 4 3.0842 - 2.8022 0.97 2727 138 0.1597 0.2248 REMARK 3 5 2.8022 - 2.6013 0.98 2725 162 0.1593 0.1870 REMARK 3 6 2.6013 - 2.4480 0.97 2695 142 0.1506 0.1821 REMARK 3 7 2.4480 - 2.3254 0.97 2699 138 0.1417 0.1879 REMARK 3 8 2.3254 - 2.2241 0.98 2729 137 0.1465 0.1937 REMARK 3 9 2.2241 - 2.1385 0.99 2725 142 0.1487 0.2040 REMARK 3 10 2.1385 - 2.0647 0.99 2755 143 0.1644 0.2405 REMARK 3 11 2.0647 - 2.0002 0.99 2766 137 0.1667 0.2230 REMARK 3 12 2.0002 - 1.9430 0.99 2709 144 0.1819 0.2503 REMARK 3 13 1.9430 - 1.8918 0.99 2733 146 0.1969 0.2459 REMARK 3 14 1.8918 - 1.8457 0.99 2734 129 0.2248 0.2606 REMARK 3 15 1.8457 - 1.8037 0.99 2712 145 0.2434 0.2763 REMARK 3 16 1.8037 - 1.7653 1.00 2775 123 0.2749 0.3085 REMARK 3 17 1.7653 - 1.7300 0.99 2759 133 0.3035 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3502 REMARK 3 ANGLE : 1.093 4786 REMARK 3 CHIRALITY : 0.070 523 REMARK 3 PLANARITY : 0.009 638 REMARK 3 DIHEDRAL : 14.945 2066 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9141 1.2292 64.4254 REMARK 3 T TENSOR REMARK 3 T11: 0.2595 T22: 0.2178 REMARK 3 T33: 0.2136 T12: 0.0132 REMARK 3 T13: -0.0086 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 1.9422 L22: 1.1291 REMARK 3 L33: 2.0072 L12: 0.2664 REMARK 3 L13: -0.4844 L23: -0.1898 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.0001 S13: 0.0374 REMARK 3 S21: -0.0896 S22: 0.0427 S23: -0.0859 REMARK 3 S31: 0.1744 S32: 0.1794 S33: -0.1485 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6800 6.1815 66.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.2190 T22: 0.2100 REMARK 3 T33: 0.2136 T12: 0.0176 REMARK 3 T13: 0.0005 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.4768 L22: 1.1936 REMARK 3 L33: 1.9782 L12: 0.2067 REMARK 3 L13: 0.1765 L23: -0.2962 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: 0.0172 S13: -0.0273 REMARK 3 S21: -0.0617 S22: -0.0103 S23: -0.0455 REMARK 3 S31: 0.0784 S32: 0.1874 S33: -0.0535 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2280 18.3140 89.8849 REMARK 3 T TENSOR REMARK 3 T11: 0.3155 T22: 0.2743 REMARK 3 T33: 0.2532 T12: 0.0243 REMARK 3 T13: -0.0193 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.1558 L22: 3.1910 REMARK 3 L33: 1.6856 L12: -0.3187 REMARK 3 L13: -1.0737 L23: 0.4222 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.1024 S13: 0.0064 REMARK 3 S21: 0.2572 S22: 0.0600 S23: 0.1783 REMARK 3 S31: -0.1580 S32: -0.0577 S33: -0.0306 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3292 31.8122 77.9897 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.2432 REMARK 3 T33: 0.2819 T12: -0.0025 REMARK 3 T13: 0.0458 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.6893 L22: 2.0595 REMARK 3 L33: 2.0570 L12: -0.5199 REMARK 3 L13: -0.0717 L23: -0.7402 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: -0.0375 S13: 0.3240 REMARK 3 S21: 0.1487 S22: 0.0227 S23: -0.0865 REMARK 3 S31: -0.4348 S32: -0.1125 S33: -0.1249 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2147 24.4886 60.0315 REMARK 3 T TENSOR REMARK 3 T11: 0.3007 T22: 0.3506 REMARK 3 T33: 0.3327 T12: 0.0465 REMARK 3 T13: -0.0243 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 2.4960 L22: 4.2204 REMARK 3 L33: 1.0551 L12: 1.5170 REMARK 3 L13: 0.2445 L23: 0.9559 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: 0.4392 S13: 0.2572 REMARK 3 S21: -0.2214 S22: 0.0500 S23: 0.4627 REMARK 3 S31: -0.0657 S32: 0.0157 S33: 0.0537 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9295 30.4827 64.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.2363 REMARK 3 T33: 0.3069 T12: 0.0043 REMARK 3 T13: 0.0037 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.4127 L22: 1.6350 REMARK 3 L33: 1.5509 L12: -0.4414 REMARK 3 L13: 0.3728 L23: -0.1650 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.1300 S13: 0.0791 REMARK 3 S21: -0.1552 S22: 0.0643 S23: 0.2243 REMARK 3 S31: -0.2877 S32: -0.0987 S33: -0.0424 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3782 17.1811 66.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.2502 T22: 0.2625 REMARK 3 T33: 0.2489 T12: 0.0050 REMARK 3 T13: 0.0069 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.3636 L22: 1.6987 REMARK 3 L33: 2.0600 L12: 0.4606 REMARK 3 L13: -0.4749 L23: 0.6683 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.0151 S13: 0.0433 REMARK 3 S21: -0.0354 S22: 0.0243 S23: -0.2039 REMARK 3 S31: 0.0530 S32: 0.2594 S33: -0.0536 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4436 9.3549 53.0999 REMARK 3 T TENSOR REMARK 3 T11: 0.3733 T22: 0.3477 REMARK 3 T33: 0.2308 T12: 0.0208 REMARK 3 T13: -0.0034 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.2938 L22: 1.9730 REMARK 3 L33: 1.6379 L12: -0.5666 REMARK 3 L13: 0.2710 L23: -0.1348 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: 0.3312 S13: 0.0652 REMARK 3 S21: -0.5253 S22: -0.0759 S23: 0.0040 REMARK 3 S31: -0.0341 S32: 0.0858 S33: -0.0286 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6I5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-17; 09-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID23-1; MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242; 0.96775 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M; DECTRIS REMARK 200 EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48843 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 56.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 - 4.2 M SODIUM FORMATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.44800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.44800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.48650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.36300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.48650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.36300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.44800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.48650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.36300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.44800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.48650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.36300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 792 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 75 REMARK 465 ASP A 76 REMARK 465 GLY A 77 REMARK 465 HIS A 257 REMARK 465 GLY A 258 REMARK 465 ASP A 259 REMARK 465 ARG A 260 REMARK 465 VAL A 461 REMARK 465 THR A 462 REMARK 465 GLY A 463 REMARK 465 ALA A 464 REMARK 465 ARG A 465 REMARK 465 PRO A 466 REMARK 465 ASP A 467 REMARK 465 LYS A 468 REMARK 465 GLU A 469 REMARK 465 ALA A 470 REMARK 465 ALA A 471 REMARK 465 HIS A 472 REMARK 465 ALA A 473 REMARK 465 GLY A 474 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 79 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 202 O HOH A 601 1.99 REMARK 500 O3 GOL A 503 O HOH A 602 1.99 REMARK 500 O PRO A 150 O HOH A 603 2.10 REMARK 500 OD2 ASP A 218 O HOH A 604 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 602 O HOH A 612 6554 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 94 82.11 -155.26 REMARK 500 HIS A 255 30.00 -93.72 REMARK 500 THR A 382 -92.72 -134.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 104.2 REMARK 620 3 KCX A 183 OQ1 94.3 97.8 REMARK 620 4 ASP A 348 OD1 92.2 81.4 173.5 REMARK 620 5 HOH A 620 O 172.8 73.9 92.9 80.7 REMARK 620 6 HOH A 621 O 107.6 145.7 92.4 84.9 72.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 183 OQ2 REMARK 620 2 HIS A 210 NE2 85.2 REMARK 620 3 HIS A 229 NE2 93.8 97.9 REMARK 620 4 HOH A 605 O 114.2 99.5 148.0 REMARK 620 5 HOH A 621 O 100.6 170.4 89.3 71.3 REMARK 620 6 HOH A 787 O 178.3 94.4 87.9 64.2 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 DBREF 6I5S A 1 474 PDB 6I5S 6I5S 1 474 SEQRES 1 A 474 MET SER PRO SER VAL THR GLU ASP ALA GLN TRP ARG HIS SEQRES 2 A 474 ARG ARG GLY LEU LEU PRO GLU GLY ASP PRO LEU VAL ALA SEQRES 3 A 474 ALA LEU GLU ARG LEU ALA ASP ARG PRO ARG THR HIS VAL SEQRES 4 A 474 PHE LYS ALA VAL GLY LEU ILE ASP ALA ALA THR GLY GLU SEQRES 5 A 474 THR ALA PRO PRO ARG ASP LEU GLU VAL ALA ASP GLY VAL SEQRES 6 A 474 VAL ALA GLY TRP SER PRO THR PRO PRO VAL ASP GLY ARG SEQRES 7 A 474 PRO ALA PRO TYR ASP TRP TYR VAL THR PRO GLY PHE VAL SEQRES 8 A 474 ASP ALA HIS ALA HIS VAL SER SER VAL SER ASP LEU VAL SEQRES 9 A 474 GLY LEU LEU VAL HIS GLY VAL THR ALA TYR ARG GLN LEU SEQRES 10 A 474 TRP GLY GLU PRO ALA HIS LEU LEU ALA ALA GLY VAL HIS SEQRES 11 A 474 ARG ALA ARG HIS ALA VAL LEU PRO ARG PRO TRP VAL THR SEQRES 12 A 474 ALA GLY VAL VAL ASP GLY PRO GLY SER HIS VAL PRO GLN SEQRES 13 A 474 ALA ALA THR ILE VAL SER GLY MET ARG ASP VAL ALA LYS SEQRES 14 A 474 VAL VAL ASP ASP VAL LEU GLY PHE GLY PHE ASP GLY ILE SEQRES 15 A 474 KCX VAL TYR ASP ASP VAL GLU ARG PRO VAL PHE GLU ALA SEQRES 16 A 474 LEU VAL ARG ASP ALA ASP ARG ALA GLY ILE PRO VAL VAL SEQRES 17 A 474 GLY HIS VAL PRO GLN ALA VAL ARG LEU ASP VAL ALA LEU SEQRES 18 A 474 ARG THR MET ARG SER THR GLU HIS LEU TYR GLY PHE VAL SEQRES 19 A 474 PRO ASN VAL PHE ARG LEU PRO ALA ALA GLU ARG TRP ASP SEQRES 20 A 474 ALA LEU ALA ASP ALA LEU ARG HIS HIS HIS GLY ASP ARG SEQRES 21 A 474 LEU ALA GLU ALA ALA GLY HIS PHE VAL CYS PRO THR LEU SEQRES 22 A 474 VAL ALA TRP ARG ALA ARG THR GLY GLU ARG ARG PHE THR SEQRES 23 A 474 ARG PRO SER ARG ALA VAL LEU GLN ALA ALA THR PRO SER SEQRES 24 A 474 ARG ARG PRO ALA TRP GLN ALA ALA ALA ARG ASP ALA LEU SEQRES 25 A 474 ARG LEU ASP PRO ALA GLU ALA GLU ARG ARG GLY ALA LEU SEQRES 26 A 474 VAL ASP ARG LEU GLY ARG ILE ALA ARG ALA LEU ALA GLU SEQRES 27 A 474 GLU GLY ALA ARG LEU LEU VAL GLY THR ASP CYS GLY ASN SEQRES 28 A 474 PRO PHE VAL VAL ALA GLY PRO SER PHE HIS LYS GLU ILE SEQRES 29 A 474 ALA GLU LEU THR ARG ALA GLY LEU GLY PHE GLY ALA VAL SEQRES 30 A 474 LEU LYS ALA ALA THR ALA ASP ALA TYR ASP VAL MET GLY SEQRES 31 A 474 TRP HIS ASP LYS PRO ALA ALA GLY ARG ALA ASP LEU VAL SEQRES 32 A 474 PHE TYR ARG ARG HIS PRO ASP ASP GLY PRO THR GLY LEU SEQRES 33 A 474 ALA ARG PRO ASP GLY VAL LEU VAL ASP GLY VAL PHE LEU SEQRES 34 A 474 ASP GLY GLU ASP LEU ASP ARG LEU TRP SER LEU ARG LEU SEQRES 35 A 474 SER ALA ALA GLY LEU ASP PRO SER ALA TRP ALA ARG GLY SEQRES 36 A 474 ALA LEU ASP PRO PRO VAL THR GLY ALA ARG PRO ASP LYS SEQRES 37 A 474 GLU ALA ALA HIS ALA GLY HET KCX A 183 12 HET ZN A 501 1 HET ZN A 502 1 HET GOL A 503 6 HET CL A 504 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 ZN 2(ZN 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 CL CL 1- FORMUL 6 HOH *207(H2 O) HELIX 1 AA1 ASP A 22 ALA A 32 1 11 HELIX 2 AA2 SER A 99 HIS A 109 1 11 HELIX 3 AA3 GLU A 120 ARG A 133 1 14 HELIX 4 AA4 GLY A 163 GLY A 178 1 16 HELIX 5 AA5 GLU A 189 GLY A 204 1 16 HELIX 6 AA6 ARG A 216 MET A 224 1 9 HELIX 7 AA7 ASN A 236 LEU A 240 5 5 HELIX 8 AA8 PRO A 241 ALA A 243 5 3 HELIX 9 AA9 GLU A 244 HIS A 255 1 12 HELIX 10 AB1 LEU A 261 ALA A 265 5 5 HELIX 11 AB2 THR A 272 THR A 280 1 9 HELIX 12 AB3 SER A 289 ALA A 296 1 8 HELIX 13 AB4 ARG A 300 LEU A 314 1 15 HELIX 14 AB5 ASP A 315 GLU A 339 1 25 HELIX 15 AB6 GLY A 357 ALA A 370 1 14 HELIX 16 AB7 GLY A 373 THR A 382 1 10 HELIX 17 AB8 THR A 382 MET A 389 1 8 HELIX 18 AB9 GLY A 431 ALA A 445 1 15 HELIX 19 AC1 ASP A 448 TRP A 452 5 5 SHEET 1 AA1 7 VAL A 65 PRO A 71 0 SHEET 2 AA1 7 ARG A 57 ALA A 62 -1 N ASP A 58 O SER A 70 SHEET 3 AA1 7 HIS A 38 LEU A 45 -1 N VAL A 43 O ARG A 57 SHEET 4 AA1 7 TRP A 84 PRO A 88 1 O TRP A 84 N GLY A 44 SHEET 5 AA1 7 LEU A 402 TYR A 405 -1 O VAL A 403 N THR A 87 SHEET 6 AA1 7 GLY A 421 VAL A 424 -1 O GLY A 421 N PHE A 404 SHEET 7 AA1 7 VAL A 427 ASP A 430 -1 O LEU A 429 N VAL A 422 SHEET 1 AA2 3 PHE A 90 ALA A 95 0 SHEET 2 AA2 3 VAL A 111 GLN A 116 1 O ARG A 115 N ALA A 95 SHEET 3 AA2 3 ARG A 139 VAL A 142 1 O TRP A 141 N GLN A 116 SHEET 1 AA3 2 VAL A 147 ASP A 148 0 SHEET 2 AA3 2 THR A 159 ILE A 160 1 O THR A 159 N ASP A 148 SHEET 1 AA4 2 ILE A 182 VAL A 184 0 SHEET 2 AA4 2 VAL A 207 GLY A 209 1 O VAL A 208 N ILE A 182 SHEET 1 AA5 3 SER A 226 GLU A 228 0 SHEET 2 AA5 3 PHE A 268 CYS A 270 1 O CYS A 270 N THR A 227 SHEET 3 AA5 3 ARG A 342 LEU A 343 1 O ARG A 342 N VAL A 269 LINK NE2 HIS A 94 ZN ZN A 502 1555 1555 2.12 LINK NE2 HIS A 96 ZN ZN A 502 1555 1555 2.10 LINK C ILE A 182 N KCX A 183 1555 1555 1.32 LINK C KCX A 183 N VAL A 184 1555 1555 1.35 LINK OQ1 KCX A 183 ZN ZN A 502 1555 1555 2.06 LINK OQ2 KCX A 183 ZN ZN A 501 1555 1555 1.98 LINK NE2 HIS A 210 ZN ZN A 501 1555 1555 2.15 LINK NE2 HIS A 229 ZN ZN A 501 1555 1555 2.19 LINK OD1 ASP A 348 ZN ZN A 502 1555 1555 2.24 LINK ZN ZN A 501 O HOH A 605 1555 1555 2.14 LINK ZN ZN A 501 O HOH A 621 1555 1555 2.24 LINK ZN ZN A 501 O HOH A 787 1555 1555 2.61 LINK ZN ZN A 502 O HOH A 620 1555 1555 2.15 LINK ZN ZN A 502 O HOH A 621 1555 1555 2.11 SITE 1 AC1 7 KCX A 183 HIS A 210 HIS A 229 ZN A 502 SITE 2 AC1 7 HOH A 605 HOH A 621 HOH A 787 SITE 1 AC2 7 HIS A 94 HIS A 96 KCX A 183 ASP A 348 SITE 2 AC2 7 ZN A 501 HOH A 620 HOH A 621 SITE 1 AC3 8 ARG A 190 ARG A 216 HIS A 361 THR A 414 SITE 2 AC3 8 LEU A 416 ALA A 417 HOH A 602 HOH A 612 SITE 1 AC4 2 GLN A 305 ARG A 309 CRYST1 100.973 110.726 84.896 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011779 0.00000