HEADER TRANSFERASE 15-NOV-18 6I6M TITLE PAPAVER SOMNIFERUM O-METHYLTRANSFERASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-METHYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: SEQUENCE AFTER 3C PROTEASE CLEAVAGE OF TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAPAVER SOMNIFERUM; SOURCE 3 ORGANISM_COMMON: OPIUM POPPY; SOURCE 4 ORGANISM_TAXID: 3469; SOURCE 5 GENE: MT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SAM-DEPENDENT O-METHYLTRANSFERASE, PAPAVER SOMNIFERUM, KEYWDS 2 TETRAHYDROCOLUMBAMINE, S-ADENOSYL HOMOCYSTEINE, NOSCAPINE, KEYWDS 3 BENZYLISOQUINOLINE ALKALOID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.CABRY,W.A.OFFEN,T.WINZER,Y.LI,I.A.GRAHAM,G.J.DAVIES,P.SALEH REVDAT 3 24-JAN-24 6I6M 1 REMARK REVDAT 2 10-APR-19 6I6M 1 JRNL REVDAT 1 27-MAR-19 6I6M 0 JRNL AUTH M.P.CABRY,W.A.OFFEN,T.H.WINZER,Y.LI,I.A.GRAHAM,G.J.DAVIES, JRNL AUTH 2 P.SALEH JRNL TITL STRUCTURE OF PAPAVER SOMNIFERUM O-METHYLTRANSFERASE 1 JRNL TITL 2 REVEALS INITIATION OF NOSCAPINE BIOSYNTHESIS WITH JRNL TITL 3 IMPLICATIONS FOR PLANT NATURAL PRODUCT METHYLATION JRNL REF ACS CATALYSIS 2019 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.9B01038 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 225776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 818 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 892 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6008 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5712 ; 0.005 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8223 ; 1.942 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13328 ; 1.609 ; 1.591 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 799 ; 6.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;34.339 ;23.775 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;12.526 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.994 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 783 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6839 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1186 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3044 ; 1.633 ; 1.333 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3045 ; 1.633 ; 1.333 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3864 ; 2.140 ; 2.013 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3865 ; 2.140 ; 2.013 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2964 ; 2.768 ; 1.599 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2965 ; 2.767 ; 1.598 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4349 ; 3.281 ; 2.290 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6697 ; 3.890 ;17.502 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6698 ; 3.890 ;17.501 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11720 ; 3.965 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 237667 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 76.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6I5Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, DIAMMONIUM CITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.30850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 ILE A 7 REMARK 465 PHE A 8 REMARK 465 ASN A 9 REMARK 465 THR A 10 REMARK 465 TYR A 11 REMARK 465 GLY A 12 REMARK 465 HIS A 13 REMARK 465 ASN A 14 REMARK 465 HIS A 15 REMARK 465 GLN A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 THR A 21 REMARK 465 LYS A 22 REMARK 465 ILE A 23 REMARK 465 THR A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ASN A 27 REMARK 465 GLU A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 ASN A 31 REMARK 465 GLY A 32 REMARK 465 THR A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 SER A 116 REMARK 465 ILE A 117 REMARK 465 ASN A 118 REMARK 465 ARG A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 ASP A 122 REMARK 465 ASP A 123 REMARK 465 VAL A 124 REMARK 465 VAL A 125 REMARK 465 VAL A 126 REMARK 465 HIS A 127 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 ILE B 7 REMARK 465 PHE B 8 REMARK 465 ASN B 9 REMARK 465 THR B 10 REMARK 465 TYR B 11 REMARK 465 GLY B 12 REMARK 465 HIS B 13 REMARK 465 ASN B 14 REMARK 465 HIS B 15 REMARK 465 GLN B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 VAL B 20 REMARK 465 THR B 21 REMARK 465 LYS B 22 REMARK 465 ILE B 23 REMARK 465 THR B 24 REMARK 465 ALA B 25 REMARK 465 SER B 26 REMARK 465 ASN B 27 REMARK 465 GLU B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 ASN B 31 REMARK 465 GLY B 32 REMARK 465 VAL B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 LYS B 176 CE NZ REMARK 470 ASP B 227 CG OD1 OD2 REMARK 470 LYS B 229 CE NZ REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 525 O HOH A 835 2.11 REMARK 500 O HOH B 844 O HOH B 876 2.17 REMARK 500 O HOH B 550 O HOH B 806 2.18 REMARK 500 O HOH B 563 O HOH B 811 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 65 CB SER A 65 OG 0.087 REMARK 500 GLU B 128 CD GLU B 128 OE1 -0.076 REMARK 500 GLU B 145 CD GLU B 145 OE1 0.071 REMARK 500 GLU B 191 CD GLU B 191 OE1 -0.085 REMARK 500 GLU B 196 CD GLU B 196 OE2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 220 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 220 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 146 2.75 -153.69 REMARK 500 ASP A 227 -0.99 68.30 REMARK 500 VAL A 294 -61.10 -109.89 REMARK 500 LYS A 373 70.23 48.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 963 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 964 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 965 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 966 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A 969 DISTANCE = 8.91 ANGSTROMS REMARK 525 HOH B 917 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 918 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 919 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 920 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 921 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH B 922 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B 923 DISTANCE = 7.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SLX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SLX B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 402 DBREF 6I6M A 1 390 UNP I3PLQ5 I3PLQ5_PAPSO 1 390 DBREF 6I6M B 1 390 UNP I3PLQ5 I3PLQ5_PAPSO 1 390 SEQADV 6I6M GLY A -2 UNP I3PLQ5 EXPRESSION TAG SEQADV 6I6M PRO A -1 UNP I3PLQ5 EXPRESSION TAG SEQADV 6I6M ALA A 0 UNP I3PLQ5 EXPRESSION TAG SEQADV 6I6M ALA A 114 UNP I3PLQ5 LYS 114 ENGINEERED MUTATION SEQADV 6I6M ALA A 115 UNP I3PLQ5 LYS 115 ENGINEERED MUTATION SEQADV 6I6M ALA A 297 UNP I3PLQ5 ASP 297 ENGINEERED MUTATION SEQADV 6I6M GLY B -2 UNP I3PLQ5 EXPRESSION TAG SEQADV 6I6M PRO B -1 UNP I3PLQ5 EXPRESSION TAG SEQADV 6I6M ALA B 0 UNP I3PLQ5 EXPRESSION TAG SEQADV 6I6M ALA B 114 UNP I3PLQ5 LYS 114 ENGINEERED MUTATION SEQADV 6I6M ALA B 115 UNP I3PLQ5 LYS 115 ENGINEERED MUTATION SEQADV 6I6M ALA B 297 UNP I3PLQ5 ASP 297 ENGINEERED MUTATION SEQRES 1 A 393 GLY PRO ALA MET ALA THR ASN GLY GLU ILE PHE ASN THR SEQRES 2 A 393 TYR GLY HIS ASN HIS GLN SER ALA THR VAL THR LYS ILE SEQRES 3 A 393 THR ALA SER ASN GLU SER SER ASN GLY VAL CYS TYR LEU SEQRES 4 A 393 SER GLU THR ALA ASN LEU GLY LYS LEU ILE CYS ILE PRO SEQRES 5 A 393 MET ALA LEU ARG ALA ALA MET GLU LEU ASN VAL PHE GLN SEQRES 6 A 393 LEU ILE SER LYS PHE GLY THR ASP ALA LYS VAL SER ALA SEQRES 7 A 393 SER GLU ILE ALA SER LYS MET PRO ASN ALA LYS ASN ASN SEQRES 8 A 393 PRO GLU ALA ALA MET TYR LEU ASP ARG ILE LEU ARG LEU SEQRES 9 A 393 LEU GLY ALA SER SER ILE LEU SER VAL SER THR THR ALA SEQRES 10 A 393 ALA SER ILE ASN ARG GLY GLY ASP ASP VAL VAL VAL HIS SEQRES 11 A 393 GLU LYS LEU TYR GLY LEU THR ASN SER SER CYS CYS LEU SEQRES 12 A 393 VAL PRO ARG GLN GLU ASP GLY VAL SER LEU VAL GLU GLU SEQRES 13 A 393 LEU LEU PHE THR SER ASP LYS VAL VAL VAL ASP SER PHE SEQRES 14 A 393 PHE LYS LEU LYS CYS VAL VAL GLU GLU LYS ASP SER VAL SEQRES 15 A 393 PRO PHE GLU VAL ALA HIS GLY ALA LYS ILE PHE GLU TYR SEQRES 16 A 393 ALA ALA THR GLU PRO ARG MET ASN GLN VAL PHE ASN ASP SEQRES 17 A 393 GLY MET ALA VAL PHE SER ILE VAL VAL PHE GLU ALA VAL SEQRES 18 A 393 PHE ARG VAL TYR ASP GLY PHE LEU ASP MET LYS GLU LEU SEQRES 19 A 393 LEU ASP VAL GLY GLY GLY ILE GLY THR SER VAL SER LYS SEQRES 20 A 393 ILE VAL ALA LYS TYR PRO LEU ILE ARG GLY VAL ASN PHE SEQRES 21 A 393 ASP LEU PRO HIS VAL ILE SER VAL ALA PRO GLN TYR PRO SEQRES 22 A 393 GLY VAL GLU HIS VAL ALA GLY ASP MET PHE GLU GLU VAL SEQRES 23 A 393 PRO LYS GLY GLN ASN MET LEU LEU LYS TRP VAL LEU HIS SEQRES 24 A 393 ALA TRP GLY ASP GLU ARG CYS VAL LYS LEU LEU LYS ASN SEQRES 25 A 393 CYS TRP ASN SER LEU PRO VAL GLY GLY LYS VAL LEU ILE SEQRES 26 A 393 ILE GLU PHE VAL LEU PRO ASN GLU LEU GLY ASN ASN ALA SEQRES 27 A 393 GLU SER PHE ASN ALA LEU ILE PRO ASP LEU LEU LEU MET SEQRES 28 A 393 ALA LEU ASN PRO GLY GLY LYS GLU ARG THR ILE SER GLU SEQRES 29 A 393 TYR ASP ASP LEU GLY LYS ALA ALA GLY PHE ILE LYS THR SEQRES 30 A 393 ILE PRO ILE PRO ILE SER ASN GLY LEU HIS VAL ILE GLU SEQRES 31 A 393 PHE HIS LYS SEQRES 1 B 393 GLY PRO ALA MET ALA THR ASN GLY GLU ILE PHE ASN THR SEQRES 2 B 393 TYR GLY HIS ASN HIS GLN SER ALA THR VAL THR LYS ILE SEQRES 3 B 393 THR ALA SER ASN GLU SER SER ASN GLY VAL CYS TYR LEU SEQRES 4 B 393 SER GLU THR ALA ASN LEU GLY LYS LEU ILE CYS ILE PRO SEQRES 5 B 393 MET ALA LEU ARG ALA ALA MET GLU LEU ASN VAL PHE GLN SEQRES 6 B 393 LEU ILE SER LYS PHE GLY THR ASP ALA LYS VAL SER ALA SEQRES 7 B 393 SER GLU ILE ALA SER LYS MET PRO ASN ALA LYS ASN ASN SEQRES 8 B 393 PRO GLU ALA ALA MET TYR LEU ASP ARG ILE LEU ARG LEU SEQRES 9 B 393 LEU GLY ALA SER SER ILE LEU SER VAL SER THR THR ALA SEQRES 10 B 393 ALA SER ILE ASN ARG GLY GLY ASP ASP VAL VAL VAL HIS SEQRES 11 B 393 GLU LYS LEU TYR GLY LEU THR ASN SER SER CYS CYS LEU SEQRES 12 B 393 VAL PRO ARG GLN GLU ASP GLY VAL SER LEU VAL GLU GLU SEQRES 13 B 393 LEU LEU PHE THR SER ASP LYS VAL VAL VAL ASP SER PHE SEQRES 14 B 393 PHE LYS LEU LYS CYS VAL VAL GLU GLU LYS ASP SER VAL SEQRES 15 B 393 PRO PHE GLU VAL ALA HIS GLY ALA LYS ILE PHE GLU TYR SEQRES 16 B 393 ALA ALA THR GLU PRO ARG MET ASN GLN VAL PHE ASN ASP SEQRES 17 B 393 GLY MET ALA VAL PHE SER ILE VAL VAL PHE GLU ALA VAL SEQRES 18 B 393 PHE ARG VAL TYR ASP GLY PHE LEU ASP MET LYS GLU LEU SEQRES 19 B 393 LEU ASP VAL GLY GLY GLY ILE GLY THR SER VAL SER LYS SEQRES 20 B 393 ILE VAL ALA LYS TYR PRO LEU ILE ARG GLY VAL ASN PHE SEQRES 21 B 393 ASP LEU PRO HIS VAL ILE SER VAL ALA PRO GLN TYR PRO SEQRES 22 B 393 GLY VAL GLU HIS VAL ALA GLY ASP MET PHE GLU GLU VAL SEQRES 23 B 393 PRO LYS GLY GLN ASN MET LEU LEU LYS TRP VAL LEU HIS SEQRES 24 B 393 ALA TRP GLY ASP GLU ARG CYS VAL LYS LEU LEU LYS ASN SEQRES 25 B 393 CYS TRP ASN SER LEU PRO VAL GLY GLY LYS VAL LEU ILE SEQRES 26 B 393 ILE GLU PHE VAL LEU PRO ASN GLU LEU GLY ASN ASN ALA SEQRES 27 B 393 GLU SER PHE ASN ALA LEU ILE PRO ASP LEU LEU LEU MET SEQRES 28 B 393 ALA LEU ASN PRO GLY GLY LYS GLU ARG THR ILE SER GLU SEQRES 29 B 393 TYR ASP ASP LEU GLY LYS ALA ALA GLY PHE ILE LYS THR SEQRES 30 B 393 ILE PRO ILE PRO ILE SER ASN GLY LEU HIS VAL ILE GLU SEQRES 31 B 393 PHE HIS LYS HET SLX A 401 24 HET SAH A 402 26 HET SLX B 401 24 HET SAH B 402 26 HETNAM SLX (13AS)-3,10-DIMETHOXY-5,8,13,13A-TETRAHYDRO-6H- HETNAM 2 SLX ISOQUINO[3,2-A]ISOQUINOLINE-2,9-DIOL HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETSYN SLX (S)-SCOULERINE FORMUL 3 SLX 2(C19 H21 N O4) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 7 HOH *892(H2 O) HELIX 1 AA1 CYS A 34 LEU A 58 1 25 HELIX 2 AA2 ASN A 59 LYS A 66 1 8 HELIX 3 AA3 ALA A 75 SER A 80 1 6 HELIX 4 AA4 LYS A 81 LYS A 86 5 6 HELIX 5 AA5 GLU A 90 SER A 105 1 16 HELIX 6 AA6 THR A 134 CYS A 139 1 6 HELIX 7 AA7 LEU A 150 SER A 158 1 9 HELIX 8 AA8 ASP A 159 PHE A 167 1 9 HELIX 9 AA9 LYS A 170 GLU A 175 1 6 HELIX 10 AB1 VAL A 179 GLY A 186 1 8 HELIX 11 AB2 LYS A 188 GLU A 196 1 9 HELIX 12 AB3 GLU A 196 TYR A 222 1 27 HELIX 13 AB4 GLY A 239 TYR A 249 1 11 HELIX 14 AB5 LEU A 259 SER A 264 1 6 HELIX 15 AB6 VAL A 294 TRP A 298 5 5 HELIX 16 AB7 GLY A 299 LEU A 314 1 16 HELIX 17 AB8 ASN A 334 ASN A 351 1 18 HELIX 18 AB9 THR A 358 ALA A 369 1 12 HELIX 19 AC1 TYR B 35 LEU B 58 1 24 HELIX 20 AC2 ASN B 59 LYS B 66 1 8 HELIX 21 AC3 ALA B 75 SER B 80 1 6 HELIX 22 AC4 LYS B 81 LYS B 86 5 6 HELIX 23 AC5 GLU B 90 SER B 105 1 16 HELIX 24 AC6 THR B 113 ARG B 119 1 7 HELIX 25 AC7 THR B 134 CYS B 139 1 6 HELIX 26 AC8 LEU B 150 SER B 158 1 9 HELIX 27 AC9 ASP B 159 PHE B 167 1 9 HELIX 28 AD1 LYS B 170 GLU B 175 1 6 HELIX 29 AD2 VAL B 179 GLY B 186 1 8 HELIX 30 AD3 LYS B 188 ALA B 194 1 7 HELIX 31 AD4 GLU B 196 TYR B 222 1 27 HELIX 32 AD5 GLY B 239 TYR B 249 1 11 HELIX 33 AD6 LEU B 259 SER B 264 1 6 HELIX 34 AD7 VAL B 294 TRP B 298 5 5 HELIX 35 AD8 GLY B 299 LEU B 314 1 16 HELIX 36 AD9 ASN B 334 ASN B 351 1 18 HELIX 37 AE1 THR B 358 ALA B 369 1 12 SHEET 1 AA1 3 VAL A 73 SER A 74 0 SHEET 2 AA1 3 LEU A 130 GLY A 132 -1 O TYR A 131 N VAL A 73 SHEET 3 AA1 3 SER A 109 SER A 111 -1 N SER A 111 O LEU A 130 SHEET 1 AA2 7 VAL A 272 ALA A 276 0 SHEET 2 AA2 7 ARG A 253 ASP A 258 1 N ASN A 256 O GLU A 273 SHEET 3 AA2 7 GLU A 230 VAL A 234 1 N ASP A 233 O VAL A 255 SHEET 4 AA2 7 MET A 289 LYS A 292 1 O LEU A 290 N VAL A 234 SHEET 5 AA2 7 LYS A 319 PHE A 325 1 O LEU A 321 N LEU A 291 SHEET 6 AA2 7 LEU A 383 HIS A 389 -1 O ILE A 386 N ILE A 322 SHEET 7 AA2 7 LYS A 373 SER A 380 -1 N ILE A 379 O LEU A 383 SHEET 1 AA3 3 VAL B 73 SER B 74 0 SHEET 2 AA3 3 LEU B 130 LEU B 133 -1 O TYR B 131 N VAL B 73 SHEET 3 AA3 3 LEU B 108 SER B 111 -1 N SER B 111 O LEU B 130 SHEET 1 AA4 7 VAL B 272 ALA B 276 0 SHEET 2 AA4 7 ARG B 253 ASP B 258 1 N ASN B 256 O GLU B 273 SHEET 3 AA4 7 GLU B 230 VAL B 234 1 N ASP B 233 O VAL B 255 SHEET 4 AA4 7 MET B 289 LYS B 292 1 O LEU B 290 N VAL B 234 SHEET 5 AA4 7 LYS B 319 PHE B 325 1 O LEU B 321 N LEU B 291 SHEET 6 AA4 7 LEU B 383 HIS B 389 -1 O ILE B 386 N ILE B 322 SHEET 7 AA4 7 ILE B 372 SER B 380 -1 N ILE B 379 O LEU B 383 SITE 1 AC1 11 GLU A 153 PHE A 156 THR A 157 PHE A 203 SITE 2 AC1 11 TRP A 293 HIS A 296 ASN A 339 ILE A 342 SITE 3 AC1 11 SAH A 402 HOH A 534 HOH A 584 SITE 1 AC2 17 MET A 207 SER A 211 GLY A 235 GLY A 237 SITE 2 AC2 17 ASP A 258 LEU A 259 VAL A 262 ASP A 278 SITE 3 AC2 17 MET A 279 LYS A 292 TRP A 293 SLX A 401 SITE 4 AC2 17 HOH A 538 HOH A 577 HOH A 583 HOH A 614 SITE 5 AC2 17 HOH A 692 SITE 1 AC3 11 GLU B 153 PHE B 156 PHE B 203 TRP B 293 SITE 2 AC3 11 HIS B 296 ASN B 339 ILE B 342 SAH B 402 SITE 3 AC3 11 HOH B 546 HOH B 591 HOH B 659 SITE 1 AC4 18 MET B 207 SER B 211 GLY B 235 GLY B 237 SITE 2 AC4 18 ASP B 258 LEU B 259 VAL B 262 ASP B 278 SITE 3 AC4 18 MET B 279 LYS B 292 TRP B 293 SLX B 401 SITE 4 AC4 18 HOH B 536 HOH B 575 HOH B 580 HOH B 597 SITE 5 AC4 18 HOH B 699 HOH B 710 CRYST1 68.868 76.617 77.158 90.00 101.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014521 0.000000 0.002968 0.00000 SCALE2 0.000000 0.013052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013228 0.00000