HEADER OXIDOREDUCTASE 15-NOV-18 6I6V
TITLE SEPIAPTERIN REDUCTASE IN COMPLEX WITH COMPOUND 6
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SEPIAPTERIN REDUCTASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: SPR;
COMPND 5 EC: 1.1.1.153;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SPR;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: NICO;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28
KEYWDS SEPIAPTERIN-REDUCTASE, OXIDOREDUCTASE, PROTEROS BIOSTRUCTURES GMBH
EXPDTA X-RAY DIFFRACTION
AUTHOR J.ALEN,M.SCHADE,M.WAGENER,M.BLAESSE
REVDAT 3 15-MAY-24 6I6V 1 REMARK
REVDAT 2 24-JUL-19 6I6V 1 JRNL
REVDAT 1 10-JUL-19 6I6V 0
JRNL AUTH J.ALEN,M.SCHADE,M.WAGENER,F.CHRISTIAN,S.NORDHOFF,B.MERLA,
JRNL AUTH 2 T.R.DUNKERN,G.BAHRENBERG,P.RATCLIFFE
JRNL TITL FRAGMENT-BASED DISCOVERY OF NOVEL POTENT SEPIAPTERIN
JRNL TITL 2 REDUCTASE INHIBITORS.
JRNL REF J.MED.CHEM. V. 62 6391 2019
JRNL REFN ISSN 0022-2623
JRNL PMID 31244106
JRNL DOI 10.1021/ACS.JMEDCHEM.9B00218
REMARK 2
REMARK 2 RESOLUTION. 1.43 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0155
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.23
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3
REMARK 3 NUMBER OF REFLECTIONS : 89997
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.162
REMARK 3 R VALUE (WORKING SET) : 0.159
REMARK 3 FREE R VALUE : 0.212
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200
REMARK 3 FREE R VALUE TEST SET COUNT : 4925
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47
REMARK 3 REFLECTION IN BIN (WORKING SET) : 6583
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.48
REMARK 3 BIN R VALUE (WORKING SET) : 0.4400
REMARK 3 BIN FREE R VALUE SET COUNT : 379
REMARK 3 BIN FREE R VALUE : 0.4660
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3947
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 160
REMARK 3 SOLVENT ATOMS : 446
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.73
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.26000
REMARK 3 B22 (A**2) : -0.53000
REMARK 3 B33 (A**2) : -0.73000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.073
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.860
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4263 ; 0.009 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 4215 ; 0.002 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5810 ; 1.643 ; 2.041
REMARK 3 BOND ANGLES OTHERS (DEGREES): 9691 ; 2.025 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 5.708 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;37.327 ;24.036
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 724 ;11.574 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.820 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.081 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4790 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 924 ; 0.004 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2140 ; 3.517 ; 2.641
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2139 ; 3.504 ; 2.640
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2683 ; 3.911 ; 4.483
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2684 ; 3.919 ; 4.483
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2123 ; 5.132 ; 3.254
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2123 ; 5.130 ; 3.254
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3112 ; 5.313 ; 5.224
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4801 ; 6.674 ;27.311
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4802 ; 6.674 ;27.318
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8478 ;11.228 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): 268 ;36.544 ; 5.000
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8585 ;13.667 ; 5.000
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 6I6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-18.
REMARK 100 THE DEPOSITION ID IS D_1200012935.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 07-APR-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94922
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430
REMARK 200 RESOLUTION RANGE LOW (A) : 64.230
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3
REMARK 200 DATA REDUNDANCY : 2.700
REMARK 200 R MERGE (I) : 0.04600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4800
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1
REMARK 200 DATA REDUNDANCY IN SHELL : 2.60
REMARK 200 R MERGE FOR SHELL (I) : 0.59700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: REFMAC
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.92
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15.00 %W/V PEG 3350, 0.40 M MG
REMARK 280 FORMATE, VAPOR DIFFUSION, TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.20400
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.77050
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.80550
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.77050
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.20400
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.80550
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7550 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 20290 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -14
REMARK 465 GLY A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 HIS A -9
REMARK 465 HIS A -8
REMARK 465 ARG A 58
REMARK 465 SER A 59
REMARK 465 LYS A 261
REMARK 465 MET B -14
REMARK 465 GLY B -13
REMARK 465 HIS B -12
REMARK 465 HIS B -11
REMARK 465 HIS B -10
REMARK 465 HIS B -9
REMARK 465 HIS B -8
REMARK 465 HIS B -7
REMARK 465 GLU B -6
REMARK 465 ASN B -5
REMARK 465 LEU B -4
REMARK 465 TYR B -3
REMARK 465 PHE B -2
REMARK 465 GLN B -1
REMARK 465 GLY B 0
REMARK 465 MET B 1
REMARK 465 GLU B 2
REMARK 465 GLY B 3
REMARK 465 LYS B 261
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 GLU A -6 CD OE1 OE2
REMARK 480 GLU A 57 CG CD OE1 OE2
REMARK 480 GLU A 85 CD OE1 OE2
REMARK 480 LYS A 220 CD CE NZ
REMARK 480 LYS B 90 CG CD CE NZ
REMARK 480 LYS B 220 CD CE NZ
REMARK 480 GLU B 224 CG CD OE1 OE2
REMARK 480 LYS B 228 CE NZ
REMARK 480 LYS B 230 CE NZ
REMARK 480 LYS B 235 NZ
REMARK 480 LYS B 247 NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES
REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 MET A 131 CG - SD - CE ANGL. DEV. = -9.7 DEGREES
REMARK 500 ARG B 210 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 156 -159.22 -106.76
REMARK 500 SER B 156 -158.48 -107.20
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 623 DISTANCE = 6.01 ANGSTROMS
REMARK 615
REMARK 615 ZERO OCCUPANCY ATOM
REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 615 M RES C SSEQI
REMARK 615 H6E A 302
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue H6E A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue H6E B 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305
DBREF 6I6V A 1 261 UNP P35270 SPRE_HUMAN 1 261
DBREF 6I6V B 1 261 UNP P35270 SPRE_HUMAN 1 261
SEQADV 6I6V MET A -14 UNP P35270 INITIATING METHIONINE
SEQADV 6I6V GLY A -13 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS A -12 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS A -11 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS A -10 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS A -9 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS A -8 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS A -7 UNP P35270 EXPRESSION TAG
SEQADV 6I6V GLU A -6 UNP P35270 EXPRESSION TAG
SEQADV 6I6V ASN A -5 UNP P35270 EXPRESSION TAG
SEQADV 6I6V LEU A -4 UNP P35270 EXPRESSION TAG
SEQADV 6I6V TYR A -3 UNP P35270 EXPRESSION TAG
SEQADV 6I6V PHE A -2 UNP P35270 EXPRESSION TAG
SEQADV 6I6V GLN A -1 UNP P35270 EXPRESSION TAG
SEQADV 6I6V GLY A 0 UNP P35270 EXPRESSION TAG
SEQADV 6I6V MET B -14 UNP P35270 INITIATING METHIONINE
SEQADV 6I6V GLY B -13 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS B -12 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS B -11 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS B -10 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS B -9 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS B -8 UNP P35270 EXPRESSION TAG
SEQADV 6I6V HIS B -7 UNP P35270 EXPRESSION TAG
SEQADV 6I6V GLU B -6 UNP P35270 EXPRESSION TAG
SEQADV 6I6V ASN B -5 UNP P35270 EXPRESSION TAG
SEQADV 6I6V LEU B -4 UNP P35270 EXPRESSION TAG
SEQADV 6I6V TYR B -3 UNP P35270 EXPRESSION TAG
SEQADV 6I6V PHE B -2 UNP P35270 EXPRESSION TAG
SEQADV 6I6V GLN B -1 UNP P35270 EXPRESSION TAG
SEQADV 6I6V GLY B 0 UNP P35270 EXPRESSION TAG
SEQRES 1 A 276 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE
SEQRES 2 A 276 GLN GLY MET GLU GLY GLY LEU GLY ARG ALA VAL CYS LEU
SEQRES 3 A 276 LEU THR GLY ALA SER ARG GLY PHE GLY ARG THR LEU ALA
SEQRES 4 A 276 PRO LEU LEU ALA SER LEU LEU SER PRO GLY SER VAL LEU
SEQRES 5 A 276 VAL LEU SER ALA ARG ASN ASP GLU ALA LEU ARG GLN LEU
SEQRES 6 A 276 GLU ALA GLU LEU GLY ALA GLU ARG SER GLY LEU ARG VAL
SEQRES 7 A 276 VAL ARG VAL PRO ALA ASP LEU GLY ALA GLU ALA GLY LEU
SEQRES 8 A 276 GLN GLN LEU LEU GLY ALA LEU ARG GLU LEU PRO ARG PRO
SEQRES 9 A 276 LYS GLY LEU GLN ARG LEU LEU LEU ILE ASN ASN ALA GLY
SEQRES 10 A 276 SER LEU GLY ASP VAL SER LYS GLY PHE VAL ASP LEU SER
SEQRES 11 A 276 ASP SER THR GLN VAL ASN ASN TYR TRP ALA LEU ASN LEU
SEQRES 12 A 276 THR SER MET LEU CYS LEU THR SER SER VAL LEU LYS ALA
SEQRES 13 A 276 PHE PRO ASP SER PRO GLY LEU ASN ARG THR VAL VAL ASN
SEQRES 14 A 276 ILE SER SER LEU CYS ALA LEU GLN PRO PHE LYS GLY TRP
SEQRES 15 A 276 ALA LEU TYR CYS ALA GLY LYS ALA ALA ARG ASP MET LEU
SEQRES 16 A 276 PHE GLN VAL LEU ALA LEU GLU GLU PRO ASN VAL ARG VAL
SEQRES 17 A 276 LEU ASN TYR ALA PRO GLY PRO LEU ASP THR ASP MET GLN
SEQRES 18 A 276 GLN LEU ALA ARG GLU THR SER VAL ASP PRO ASP MET ARG
SEQRES 19 A 276 LYS GLY LEU GLN GLU LEU LYS ALA LYS GLY LYS LEU VAL
SEQRES 20 A 276 ASP CYS LYS VAL SER ALA GLN LYS LEU LEU SER LEU LEU
SEQRES 21 A 276 GLU LYS ASP GLU PHE LYS SER GLY ALA HIS VAL ASP PHE
SEQRES 22 A 276 TYR ASP LYS
SEQRES 1 B 276 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE
SEQRES 2 B 276 GLN GLY MET GLU GLY GLY LEU GLY ARG ALA VAL CYS LEU
SEQRES 3 B 276 LEU THR GLY ALA SER ARG GLY PHE GLY ARG THR LEU ALA
SEQRES 4 B 276 PRO LEU LEU ALA SER LEU LEU SER PRO GLY SER VAL LEU
SEQRES 5 B 276 VAL LEU SER ALA ARG ASN ASP GLU ALA LEU ARG GLN LEU
SEQRES 6 B 276 GLU ALA GLU LEU GLY ALA GLU ARG SER GLY LEU ARG VAL
SEQRES 7 B 276 VAL ARG VAL PRO ALA ASP LEU GLY ALA GLU ALA GLY LEU
SEQRES 8 B 276 GLN GLN LEU LEU GLY ALA LEU ARG GLU LEU PRO ARG PRO
SEQRES 9 B 276 LYS GLY LEU GLN ARG LEU LEU LEU ILE ASN ASN ALA GLY
SEQRES 10 B 276 SER LEU GLY ASP VAL SER LYS GLY PHE VAL ASP LEU SER
SEQRES 11 B 276 ASP SER THR GLN VAL ASN ASN TYR TRP ALA LEU ASN LEU
SEQRES 12 B 276 THR SER MET LEU CYS LEU THR SER SER VAL LEU LYS ALA
SEQRES 13 B 276 PHE PRO ASP SER PRO GLY LEU ASN ARG THR VAL VAL ASN
SEQRES 14 B 276 ILE SER SER LEU CYS ALA LEU GLN PRO PHE LYS GLY TRP
SEQRES 15 B 276 ALA LEU TYR CYS ALA GLY LYS ALA ALA ARG ASP MET LEU
SEQRES 16 B 276 PHE GLN VAL LEU ALA LEU GLU GLU PRO ASN VAL ARG VAL
SEQRES 17 B 276 LEU ASN TYR ALA PRO GLY PRO LEU ASP THR ASP MET GLN
SEQRES 18 B 276 GLN LEU ALA ARG GLU THR SER VAL ASP PRO ASP MET ARG
SEQRES 19 B 276 LYS GLY LEU GLN GLU LEU LYS ALA LYS GLY LYS LEU VAL
SEQRES 20 B 276 ASP CYS LYS VAL SER ALA GLN LYS LEU LEU SER LEU LEU
SEQRES 21 B 276 GLU LYS ASP GLU PHE LYS SER GLY ALA HIS VAL ASP PHE
SEQRES 22 B 276 TYR ASP LYS
HET NAP A 301 48
HET H6E A 302 20
HET EDO A 303 4
HET EDO A 304 4
HET EDO A 305 4
HET NAP B 301 48
HET H6E B 302 20
HET EDO B 303 4
HET EDO B 304 4
HET EDO B 305 4
HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HETNAM H6E 2-[[(3~{R})-OXAN-3-YL]METHYLSULFONYL]-2-
HETNAM 2 H6E AZASPIRO[4.5]DECANE
HETNAM EDO 1,2-ETHANEDIOL
HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 NAP 2(C21 H28 N7 O17 P3)
FORMUL 4 H6E 2(C15 H27 N O3 S)
FORMUL 5 EDO 6(C2 H6 O2)
FORMUL 13 HOH *446(H2 O)
HELIX 1 AA1 HIS A -7 GLN A -1 5 7
HELIX 2 AA2 ARG A 17 LEU A 31 1 15
HELIX 3 AA3 ASN A 43 GLU A 57 1 15
HELIX 4 AA4 ALA A 72 GLU A 85 1 14
HELIX 5 AA5 GLY A 110 LEU A 114 5 5
HELIX 6 AA6 ASP A 116 LEU A 128 1 13
HELIX 7 AA7 LEU A 128 PHE A 142 1 15
HELIX 8 AA8 SER A 157 LEU A 161 5 5
HELIX 9 AA9 TRP A 167 GLU A 188 1 22
HELIX 10 AB1 THR A 203 SER A 213 1 11
HELIX 11 AB2 ASP A 215 GLY A 229 1 15
HELIX 12 AB3 ASP A 233 ASP A 248 1 16
HELIX 13 AB4 ARG B 17 LEU B 30 1 14
HELIX 14 AB5 ASN B 43 ALA B 56 1 14
HELIX 15 AB6 ALA B 72 GLU B 85 1 14
HELIX 16 AB7 GLY B 110 LEU B 114 5 5
HELIX 17 AB8 ASP B 116 LEU B 128 1 13
HELIX 18 AB9 LEU B 128 PHE B 142 1 15
HELIX 19 AC1 SER B 157 LEU B 161 5 5
HELIX 20 AC2 TRP B 167 GLU B 188 1 22
HELIX 21 AC3 THR B 203 SER B 213 1 11
HELIX 22 AC4 ASP B 215 LYS B 228 1 14
HELIX 23 AC5 ASP B 233 ASP B 248 1 16
SHEET 1 AA1 7 ARG A 62 PRO A 67 0
SHEET 2 AA1 7 VAL A 36 ALA A 41 1 N LEU A 39 O VAL A 64
SHEET 3 AA1 7 ALA A 8 LEU A 12 1 N CYS A 10 O VAL A 38
SHEET 4 AA1 7 ARG A 94 ASN A 99 1 O ILE A 98 N LEU A 11
SHEET 5 AA1 7 ASN A 149 ILE A 155 1 O VAL A 153 N ASN A 99
SHEET 6 AA1 7 VAL A 191 ALA A 197 1 O ARG A 192 N ARG A 150
SHEET 7 AA1 7 ALA A 254 ASP A 257 1 O VAL A 256 N ASN A 195
SHEET 1 AA2 7 ARG B 62 PRO B 67 0
SHEET 2 AA2 7 VAL B 36 ALA B 41 1 N LEU B 37 O ARG B 62
SHEET 3 AA2 7 ALA B 8 LEU B 12 1 N CYS B 10 O VAL B 38
SHEET 4 AA2 7 ARG B 94 ASN B 99 1 O ILE B 98 N LEU B 11
SHEET 5 AA2 7 ASN B 149 ILE B 155 1 O VAL B 153 N ASN B 99
SHEET 6 AA2 7 VAL B 191 ALA B 197 1 O ARG B 192 N ARG B 150
SHEET 7 AA2 7 HIS B 255 ASP B 257 1 O VAL B 256 N ASN B 195
SITE 1 AC1 36 GLY A 14 SER A 16 ARG A 17 GLY A 18
SITE 2 AC1 36 PHE A 19 ALA A 41 ARG A 42 ASN A 43
SITE 3 AC1 36 ALA A 68 ASP A 69 LEU A 70 ASN A 100
SITE 4 AC1 36 ALA A 101 GLY A 102 LEU A 126 ILE A 155
SITE 5 AC1 36 SER A 156 TYR A 170 LYS A 174 PRO A 198
SITE 6 AC1 36 GLY A 199 PRO A 200 LEU A 201 THR A 203
SITE 7 AC1 36 MET A 205 GLN A 206 H6E A 302 EDO A 303
SITE 8 AC1 36 HOH A 413 HOH A 459 HOH A 476 HOH A 480
SITE 9 AC1 36 HOH A 484 HOH A 494 HOH A 514 HOH A 546
SITE 1 AC2 10 LEU A 104 SER A 157 TRP A 167 TYR A 170
SITE 2 AC2 10 PRO A 200 MET A 205 GLN A 206 LEU A 222
SITE 3 AC2 10 NAP A 301 HOH A 513
SITE 1 AC3 3 ARG A 17 ASP A 204 NAP A 301
SITE 1 AC4 4 ARG A 62 VAL A 63 VAL A 64 HOH A 532
SITE 1 AC5 6 HIS A -7 GLU A -6 ASP B 257 TYR B 259
SITE 2 AC5 6 ASP B 260 HOH B 603
SITE 1 AC6 37 GLY B 14 SER B 16 ARG B 17 GLY B 18
SITE 2 AC6 37 PHE B 19 ALA B 41 ARG B 42 ASN B 43
SITE 3 AC6 37 ALA B 68 ASP B 69 LEU B 70 ASN B 100
SITE 4 AC6 37 ALA B 101 GLY B 102 LEU B 126 ILE B 155
SITE 5 AC6 37 SER B 156 SER B 157 TYR B 170 LYS B 174
SITE 6 AC6 37 PRO B 198 GLY B 199 LEU B 201 THR B 203
SITE 7 AC6 37 MET B 205 GLN B 206 H6E B 302 HOH B 405
SITE 8 AC6 37 HOH B 417 HOH B 421 HOH B 448 HOH B 485
SITE 9 AC6 37 HOH B 490 HOH B 492 HOH B 502 HOH B 514
SITE 10 AC6 37 HOH B 564
SITE 1 AC7 10 TYR A -3 MET A 1 LEU B 104 PHE B 164
SITE 2 AC7 10 TRP B 167 TYR B 170 PRO B 200 MET B 205
SITE 3 AC7 10 GLN B 206 NAP B 301
SITE 1 AC8 9 ASN A 121 LEU B 70 ALA B 72 GLU B 73
SITE 2 AC8 9 LEU B 76 ALA B 125 THR B 129 SER B 130
SITE 3 AC8 9 HOH B 455
SITE 1 AC9 5 LYS B 109 ASP B 113 LEU B 114 SER B 115
SITE 2 AC9 5 ASP B 116
SITE 1 AD1 3 ARG B 42 ALA B 68 HOH B 505
CRYST1 114.408 77.611 59.541 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008741 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012885 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016795 0.00000