HEADER HYDROLASE 20-NOV-18 6I8D TITLE STRUCTURE OF ESTER-HYDROLASE EH1AB1 FROM THE METAGENOME OF LAKE ARREO TITLE 2 COMPLEXED WITH A DERIVATIVE OF BUTYL 4-NITROPHENYL HEXYLPHOSPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EH1AB1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-46 EK/LIC KEYWDS ESTER HYDROLASE, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.CEA-RAMA,J.SANZ-APARICIO REVDAT 3 24-JAN-24 6I8D 1 REMARK REVDAT 2 30-SEP-20 6I8D 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQRES HELIX SHEET LINK REVDAT 2 3 1 SITE ATOM REVDAT 1 27-NOV-19 6I8D 0 JRNL AUTH I.CEA-RAMA,J.SANZ-APARICIO JRNL TITL STRUCTURE OF ESTER-HYDROLASE EH1AB1 FROM THE METAGENOME OF JRNL TITL 2 LAKE ARREO COMPLEXED WITH A DERIVATIVE OF BUTYL JRNL TITL 3 4-NITROPHENYL HEXYLPHOSPHONATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 11539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 865 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85000 REMARK 3 B22 (A**2) : -3.76000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.594 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.491 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.887 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.815 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4962 ; 0.005 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4379 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6722 ; 1.057 ; 1.680 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10255 ; 1.014 ; 1.675 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 628 ; 6.188 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;27.232 ;20.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 714 ;13.342 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;17.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5710 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2518 ; 1.587 ; 4.049 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2517 ; 1.583 ; 4.049 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3144 ; 2.786 ; 6.072 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3145 ; 2.786 ; 6.072 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2444 ; 1.857 ; 4.294 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2444 ; 1.857 ; 4.294 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3579 ; 3.195 ; 6.360 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5289 ; 6.139 ;48.501 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5289 ; 6.139 ;48.497 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 315 B 1 315 9928 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200012933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : KB FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.11.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12184 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.21800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.6.02 REMARK 200 STARTING MODEL: 5JD4 REMARK 200 REMARK 200 REMARK: THIN BARS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45 % PEG P400, 0.1 M BIS-TRIS PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.24900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.08050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.24900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.08050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 VAL A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 VAL B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 161 P1 H7N A 401 1.39 REMARK 500 OG SER B 161 P1 H7N B 401 1.40 REMARK 500 O LEU B 27 N HIS B 29 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 161 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 60.95 -117.48 REMARK 500 VAL A 92 -48.24 -141.85 REMARK 500 ASN A 95 -173.13 -172.77 REMARK 500 SER A 161 -120.36 58.75 REMARK 500 TYR A 189 58.04 29.62 REMARK 500 PHE A 209 -121.12 58.72 REMARK 500 LEU A 210 124.30 -36.57 REMARK 500 TYR A 255 57.56 -113.09 REMARK 500 LEU A 291 56.92 -93.01 REMARK 500 LEU B 24 -25.20 66.87 REMARK 500 PRO B 28 75.27 -68.17 REMARK 500 VAL B 92 -48.28 -141.52 REMARK 500 ASN B 95 -172.92 -172.79 REMARK 500 SER B 161 -126.91 62.68 REMARK 500 TYR B 189 55.10 35.20 REMARK 500 PHE B 209 -121.37 58.34 REMARK 500 LEU B 210 119.77 -37.43 REMARK 500 TYR B 255 57.33 -112.28 REMARK 500 LEU B 291 56.35 -92.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 18 0.18 SIDE CHAIN REMARK 500 ARG B 21 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 H7N A 401 REMARK 610 H7N B 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H7N A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H7N A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H7N B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide H7N B 402 and SER B REMARK 800 211 DBREF 6I8D A -13 315 PDB 6I8D 6I8D -13 315 DBREF 6I8D B -13 315 PDB 6I8D 6I8D -13 315 SEQRES 1 A 329 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 329 LYS MET LEU LEU PRO GLU THR ARG ASN LEU LEU ASP LEU SEQRES 3 A 329 MET ASP ALA ALA THR ARG GLY GLY ARG PRO GLY LEU ASP SEQRES 4 A 329 THR LEU PRO HIS ALA VAL GLY ARG LYS ALA VAL ASP LYS SEQRES 5 A 329 MET SER GLU ASP GLY GLU ALA ASP PRO PRO GLU VAL ALA SEQRES 6 A 329 GLU VAL ALA ASN GLY GLY PHE ALA GLY PRO ALA SER GLU SEQRES 7 A 329 ILE ARG PHE ARG ARG TYR ARG PRO LEU GLY GLU ALA ALA SEQRES 8 A 329 GLY LEU LEU PRO THR LEU ILE TYR TYR HIS GLY GLY GLY SEQRES 9 A 329 PHE VAL ILE GLY ASN ILE GLU THR HIS ASP SER THR CYS SEQRES 10 A 329 ARG ARG LEU ALA ASN LYS SER ARG CYS GLN VAL ILE SER SEQRES 11 A 329 ILE ASP TYR ARG LEU ALA PRO GLU HIS PRO PHE PRO ALA SEQRES 12 A 329 PRO ILE ASP ASP GLY ILE ALA ALA PHE ARG HIS ILE ARG SEQRES 13 A 329 ASP ASN ALA GLU SER PHE GLY ALA ASP ALA ALA ARG LEU SEQRES 14 A 329 ALA VAL GLY GLY ASP SER ALA GLY GLY ALA MET ALA ALA SEQRES 15 A 329 VAL VAL CYS GLN ALA CYS ARG ASP ALA GLY GLU THR GLY SEQRES 16 A 329 PRO ALA PHE GLN MET LEU ILE TYR PRO ALA THR ASP SER SEQRES 17 A 329 SER ARG GLU SER ALA SER ARG VAL ALA PHE ALA GLU GLY SEQRES 18 A 329 TYR PHE LEU SER LYS ALA HIS MET ASP TRP PHE TRP GLU SEQRES 19 A 329 ALA TYR VAL PRO GLU ASP THR ASP LEU THR ASP LEU ARG SEQRES 20 A 329 LEU SER PRO LEU LEU ALA THR ASP PHE THR GLY LEU PRO SEQRES 21 A 329 PRO ALA PHE VAL LEU THR ALA GLY TYR ASP PRO LEU ARG SEQRES 22 A 329 ASP GLU GLY ARG ALA TYR ALA ASP ARG LEU ILE GLU ALA SEQRES 23 A 329 GLY ILE LYS THR THR TYR VAL ASN TYR PRO GLY THR ILE SEQRES 24 A 329 HIS GLY PHE PHE SER LEU THR ARG PHE LEU SER GLN GLY SEQRES 25 A 329 LEU LYS ALA ASN ASP GLU ALA ALA ALA VAL MET GLY ALA SEQRES 26 A 329 HIS PHE GLY THR SEQRES 1 B 329 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 329 LYS MET LEU LEU PRO GLU THR ARG ASN LEU LEU ASP LEU SEQRES 3 B 329 MET ASP ALA ALA THR ARG GLY GLY ARG PRO GLY LEU ASP SEQRES 4 B 329 THR LEU PRO HIS ALA VAL GLY ARG LYS ALA VAL ASP LYS SEQRES 5 B 329 MET SER GLU ASP GLY GLU ALA ASP PRO PRO GLU VAL ALA SEQRES 6 B 329 GLU VAL ALA ASN GLY GLY PHE ALA GLY PRO ALA SER GLU SEQRES 7 B 329 ILE ARG PHE ARG ARG TYR ARG PRO LEU GLY GLU ALA ALA SEQRES 8 B 329 GLY LEU LEU PRO THR LEU ILE TYR TYR HIS GLY GLY GLY SEQRES 9 B 329 PHE VAL ILE GLY ASN ILE GLU THR HIS ASP SER THR CYS SEQRES 10 B 329 ARG ARG LEU ALA ASN LYS SER ARG CYS GLN VAL ILE SER SEQRES 11 B 329 ILE ASP TYR ARG LEU ALA PRO GLU HIS PRO PHE PRO ALA SEQRES 12 B 329 PRO ILE ASP ASP GLY ILE ALA ALA PHE ARG HIS ILE ARG SEQRES 13 B 329 ASP ASN ALA GLU SER PHE GLY ALA ASP ALA ALA ARG LEU SEQRES 14 B 329 ALA VAL GLY GLY ASP SER ALA GLY GLY ALA MET ALA ALA SEQRES 15 B 329 VAL VAL CYS GLN ALA CYS ARG ASP ALA GLY GLU THR GLY SEQRES 16 B 329 PRO ALA PHE GLN MET LEU ILE TYR PRO ALA THR ASP SER SEQRES 17 B 329 SER ARG GLU SER ALA SER ARG VAL ALA PHE ALA GLU GLY SEQRES 18 B 329 TYR PHE LEU SER LYS ALA HIS MET ASP TRP PHE TRP GLU SEQRES 19 B 329 ALA TYR VAL PRO GLU ASP THR ASP LEU THR ASP LEU ARG SEQRES 20 B 329 LEU SER PRO LEU LEU ALA THR ASP PHE THR GLY LEU PRO SEQRES 21 B 329 PRO ALA PHE VAL LEU THR ALA GLY TYR ASP PRO LEU ARG SEQRES 22 B 329 ASP GLU GLY ARG ALA TYR ALA ASP ARG LEU ILE GLU ALA SEQRES 23 B 329 GLY ILE LYS THR THR TYR VAL ASN TYR PRO GLY THR ILE SEQRES 24 B 329 HIS GLY PHE PHE SER LEU THR ARG PHE LEU SER GLN GLY SEQRES 25 B 329 LEU LYS ALA ASN ASP GLU ALA ALA ALA VAL MET GLY ALA SEQRES 26 B 329 HIS PHE GLY THR HET H7N A 401 13 HET H7N A 402 13 HET PEG A 403 7 HET PEG A 404 7 HET GOL A 405 6 HET H7N B 401 13 HET H7N B 402 13 HET PEG B 403 7 HETNAM H7N BUTOXY(HEXYL)PHOSPHINIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 H7N 4(C10 H23 O3 P) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 7 GOL C3 H8 O3 FORMUL 11 HOH *41(H2 O) HELIX 1 AA1 LEU A 3 GLY A 20 1 18 HELIX 2 AA2 GLY A 23 LEU A 27 5 5 HELIX 3 AA3 PRO A 28 GLU A 44 1 17 HELIX 4 AA4 ASN A 95 THR A 98 5 4 HELIX 5 AA5 HIS A 99 ARG A 111 1 13 HELIX 6 AA6 PRO A 128 ASN A 144 1 17 HELIX 7 AA7 ALA A 145 PHE A 148 5 4 HELIX 8 AA8 SER A 161 ALA A 177 1 17 HELIX 9 AA9 SER A 198 PHE A 204 1 7 HELIX 10 AB1 SER A 211 VAL A 223 1 13 HELIX 11 AB2 SER A 235 ALA A 239 5 5 HELIX 12 AB3 ARG A 259 ALA A 272 1 14 HELIX 13 AB4 LEU A 295 GLY A 314 1 20 HELIX 14 AB5 LEU B 3 ARG B 18 1 16 HELIX 15 AB6 PRO B 28 GLU B 44 1 17 HELIX 16 AB7 ASN B 95 THR B 98 5 4 HELIX 17 AB8 HIS B 99 ARG B 111 1 13 HELIX 18 AB9 PRO B 128 ASN B 144 1 17 HELIX 19 AC1 ALA B 145 PHE B 148 5 4 HELIX 20 AC2 SER B 161 ALA B 177 1 17 HELIX 21 AC3 SER B 198 PHE B 204 1 7 HELIX 22 AC4 SER B 211 VAL B 223 1 13 HELIX 23 AC5 SER B 235 ALA B 239 5 5 HELIX 24 AC6 ARG B 259 ALA B 272 1 14 HELIX 25 AC7 LEU B 295 GLY B 314 1 20 SHEET 1 AA116 GLU A 52 ALA A 59 0 SHEET 2 AA116 GLU A 64 ARG A 71 -1 O ARG A 69 N ALA A 54 SHEET 3 AA116 GLN A 113 ASP A 118 -1 O VAL A 114 N TYR A 70 SHEET 4 AA116 LEU A 80 TYR A 86 1 N LEU A 83 O ILE A 115 SHEET 5 AA116 ALA A 150 ASP A 160 1 O ALA A 156 N THR A 82 SHEET 6 AA116 GLN A 185 ILE A 188 1 O MET A 186 N VAL A 157 SHEET 7 AA116 ALA A 248 TYR A 255 1 O PHE A 249 N LEU A 187 SHEET 8 AA116 THR A 276 ILE A 285 1 O THR A 277 N VAL A 250 SHEET 9 AA116 THR B 276 ILE B 285 -1 O TYR B 278 N TYR A 278 SHEET 10 AA116 ALA B 248 TYR B 255 1 N VAL B 250 O THR B 277 SHEET 11 AA116 GLN B 185 ILE B 188 1 N LEU B 187 O PHE B 249 SHEET 12 AA116 ALA B 150 ASP B 160 1 N VAL B 157 O MET B 186 SHEET 13 AA116 LEU B 80 TYR B 86 1 N THR B 82 O ALA B 156 SHEET 14 AA116 GLN B 113 ASP B 118 1 O ILE B 115 N LEU B 83 SHEET 15 AA116 GLU B 64 ARG B 71 -1 N TYR B 70 O VAL B 114 SHEET 16 AA116 GLU B 52 ALA B 59 -1 N PHE B 58 O ILE B 65 LINK OG SER A 211 P1 H7N A 402 1555 1555 1.44 LINK OG SER B 211 P1 H7N B 402 1555 1555 1.45 CISPEP 1 ALA A 122 PRO A 123 0 5.33 CISPEP 2 PHE A 127 PRO A 128 0 5.97 CISPEP 3 ALA B 122 PRO B 123 0 5.79 CISPEP 4 PHE B 127 PRO B 128 0 5.90 SITE 1 AC1 6 GLY A 89 GLY A 90 SER A 161 ALA A 162 SITE 2 AC1 6 PHE A 209 HIS A 286 SITE 1 AC2 7 ASP A 14 GLU A 206 GLY A 207 TYR A 208 SITE 2 AC2 7 PHE A 209 LEU A 210 SER A 211 SITE 1 AC3 5 ARG A 259 ASP A 260 ARG A 263 ASN A 280 SITE 2 AC3 5 ILE B 270 SITE 1 AC4 6 GLU A 52 GLY B 57 PHE B 67 HIS B 140 SITE 2 AC4 6 SER B 147 PHE B 148 SITE 1 AC5 4 SER A 194 ARG A 201 LYS A 212 TRP A 219 SITE 1 AC6 7 GLY B 89 GLY B 90 SER B 161 ALA B 162 SITE 2 AC6 7 PHE B 209 LEU B 210 HIS B 286 SITE 1 AC7 5 ILE A 270 ARG B 259 ASP B 260 ARG B 263 SITE 2 AC7 5 ASN B 280 SITE 1 AC8 11 ASP B 14 ALA B 205 GLU B 206 GLY B 207 SITE 2 AC8 11 TYR B 208 PHE B 209 LEU B 210 LYS B 212 SITE 3 AC8 11 ALA B 213 HIS B 214 MET B 215 CRYST1 85.250 88.161 98.498 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010152 0.00000