HEADER TRANSFERASE 26-NOV-18 6IA6 TITLE CRYSTAL STRUCTURE OF THE BACTERIAL DEHALOCOCCOIDES MCCARTYI ELP3 WITH TITLE 2 DESULFO-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELP3 FAMILY, ELP3 FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DEHALOCOCCOIDES MCCARTYI ELP3 AND DESULFO-COA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEHALOCOCCOIDES MCCARTYI BTF08; SOURCE 3 ORGANISM_TAXID: 1193806; SOURCE 4 GENE: BTF_573; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TRNA BINDING, ELONGATOR COMPLEX, NON-CANONICAL ACETYLTRANSFERASE, KEYWDS 2 ACETYL-COA HYDROLYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.Y.LIN,S.GLATT REVDAT 2 24-JAN-24 6IA6 1 REMARK REVDAT 1 20-FEB-19 6IA6 0 JRNL AUTH T.Y.LIN,N.E.H.ABBASSI,K.ZAKRZEWSKI,A.CHRAMIEC-GLABIK, JRNL AUTH 2 M.JEMIOLA-RZEMINSKA,J.ROZYCKI,S.GLATT JRNL TITL THE ELONGATOR SUBUNIT ELP3 IS A NON-CANONICAL TRNA JRNL TITL 2 ACETYLTRANSFERASE. JRNL REF NAT COMMUN V. 10 625 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30733442 JRNL DOI 10.1038/S41467-019-08579-2 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3106 - 4.9038 0.98 2519 134 0.1920 0.2388 REMARK 3 2 4.9038 - 3.8931 0.99 2460 130 0.1893 0.2355 REMARK 3 3 3.8931 - 3.4012 0.99 2415 128 0.2310 0.3023 REMARK 3 4 3.4012 - 3.0903 0.99 2423 128 0.2796 0.3098 REMARK 3 5 3.0903 - 2.8689 0.99 2397 126 0.3314 0.3472 REMARK 3 6 2.8689 - 2.6998 0.99 2386 126 0.3801 0.3768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3138 REMARK 3 ANGLE : 0.491 4253 REMARK 3 CHIRALITY : 0.039 470 REMARK 3 PLANARITY : 0.003 537 REMARK 3 DIHEDRAL : 14.370 1876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200013080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5L7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.3 AND 4% PEG 4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.49500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.49500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.77000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.77000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.49500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.77000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.37000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.49500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.77000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.37000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 ILE A 8 REMARK 465 SER A 9 REMARK 465 LEU A 279 REMARK 465 ARG A 280 REMARK 465 ASP A 281 REMARK 465 ILE A 282 REMARK 465 PRO A 283 REMARK 465 ALA A 284 REMARK 465 VAL A 285 REMARK 465 PHE A 286 REMARK 465 ILE A 287 REMARK 465 SER A 288 REMARK 465 ALA A 289 REMARK 465 GLY A 290 REMARK 465 LEU A 291 REMARK 465 LYS A 292 REMARK 465 ASP A 293 REMARK 465 SER A 294 REMARK 465 LEU A 295 REMARK 465 ARG A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 VAL A 299 REMARK 465 ARG A 300 REMARK 465 GLN A 301 REMARK 465 ILE A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 SER A 305 REMARK 465 ARG A 306 REMARK 465 HIS A 307 REMARK 465 GLN A 308 REMARK 465 LYS A 309 REMARK 465 CYS A 310 REMARK 465 CYS A 315 REMARK 465 ARG A 316 REMARK 465 GLU A 317 REMARK 465 TYR A 318 REMARK 465 GLY A 319 REMARK 465 HIS A 320 REMARK 465 ARG A 321 REMARK 465 GLN A 322 REMARK 465 ARG A 323 REMARK 465 LYS A 324 REMARK 465 GLY A 325 REMARK 465 GLN A 326 REMARK 465 THR A 327 REMARK 465 SER A 328 REMARK 465 GLY A 329 REMARK 465 SER A 391 REMARK 465 GLY A 392 REMARK 465 SER A 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CD CE NZ REMARK 470 LYS A 51 CD CE NZ REMARK 470 ARG A 66 NE CZ NH1 NH2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLN A 146 CD OE1 NE2 REMARK 470 ARG A 176 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 209 CE NZ REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 229 CE NZ REMARK 470 LYS A 246 CD CE NZ REMARK 470 ASN A 255 CG OD1 ND2 REMARK 470 ARG A 274 CD NE CZ NH1 NH2 REMARK 470 ARG A 277 CD NE CZ NH1 NH2 REMARK 470 ARG A 314 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 LYS A 380 CD CE NZ REMARK 470 ARG A 395 CD NE CZ NH1 NH2 REMARK 470 LYS A 400 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 112 OE1 GLU A 116 1.59 REMARK 500 HH12 ARG A 188 O PHE A 223 1.60 REMARK 500 OH TYR A 377 OE2 GLU A 436 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 257 OG1 THR A 257 3454 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 88 0.75 -69.99 REMARK 500 ILE A 139 64.02 -111.38 REMARK 500 CYS A 140 54.65 -163.25 REMARK 500 GLN A 161 -70.85 66.70 REMARK 500 LEU A 163 76.65 -101.37 REMARK 500 ARG A 173 -65.52 64.24 REMARK 500 PHE A 223 -108.80 -120.74 REMARK 500 ALA A 340 119.46 -165.84 REMARK 500 SER A 369 65.04 -105.71 REMARK 500 LEU A 387 88.61 -165.40 REMARK 500 LEU A 446 82.80 64.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 502 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 30 SG REMARK 620 2 FES A 502 S1 121.9 REMARK 620 3 FES A 502 S2 123.8 90.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 DBREF1 6IA6 A 2 447 UNP A0A1C7D1B7_9CHLR DBREF2 6IA6 A A0A1C7D1B7 2 446 SEQADV 6IA6 GLY A -2 UNP A0A1C7D1B EXPRESSION TAG SEQADV 6IA6 ALA A -1 UNP A0A1C7D1B EXPRESSION TAG SEQADV 6IA6 MET A 0 UNP A0A1C7D1B EXPRESSION TAG SEQADV 6IA6 ALA A 1 UNP A0A1C7D1B EXPRESSION TAG SEQADV 6IA6 ALA A 386 UNP A0A1C7D1B GLU 386 CONFLICT SEQADV 6IA6 ARG A 395 UNP A0A1C7D1B INSERTION SEQRES 1 A 450 GLY ALA MET ALA LYS LYS LEU SER ARG THR ILE SER GLY SEQRES 2 A 450 VAL THR PRO VAL ALA VAL MET THR LYS PRO LEU PRO CYS SEQRES 3 A 450 PRO GLY LYS CYS ILE TYR CYS PRO THR PHE ALA ALA THR SEQRES 4 A 450 PRO GLN SER TYR THR PRO GLU SER PRO ALA VAL LEU ARG SEQRES 5 A 450 ALA LYS SER CYS GLU TYR GLN ALA TYR LYS GLN VAL ALA SEQRES 6 A 450 LEU ARG LEU ARG ILE ILE GLN ASP MET GLY HIS PRO THR SEQRES 7 A 450 ASP LYS VAL GLU LEU ILE ILE MET GLY GLY THR PHE LEU SEQRES 8 A 450 SER ALA ASP ILE THR TYR GLN TYR GLY PHE ILE LYS ASP SEQRES 9 A 450 CYS TYR ASP ALA LEU ASN GLY VAL VAL ALA GLY SER LEU SEQRES 10 A 450 GLU GLU ALA LYS THR ILE ASN GLU THR ALA GLN HIS ARG SEQRES 11 A 450 CYS VAL GLY LEU CYS ILE GLU THR ARG PRO ASP ILE CYS SEQRES 12 A 450 GLY LYS ALA GLU ILE GLN ARG MET ILE ASP PHE GLY THR SEQRES 13 A 450 THR ARG VAL GLU LEU GLY VAL GLN MET LEU ASP ASP ASP SEQRES 14 A 450 ILE TYR LYS LEU VAL GLU ARG GLY HIS ARG VAL SER ASP SEQRES 15 A 450 VAL ALA GLU ALA THR CYS LEU LEU ARG GLU TYR GLY LEU SEQRES 16 A 450 LYS VAL HIS TYR HIS TRP MET PRO GLY LEU PRO GLY SER SEQRES 17 A 450 SER PRO GLU LYS ASP LEU ALA LEU SER ARG MET VAL PHE SEQRES 18 A 450 GLU ASP PRO ARG PHE CYS PRO ASP GLY LEU LYS LEU TYR SEQRES 19 A 450 PRO THR MET VAL VAL GLU GLY THR ILE LEU GLU GLN TRP SEQRES 20 A 450 TRP LYS GLU GLY ARG TYR THR PRO TYR PRO ASN GLY THR SEQRES 21 A 450 MET THR GLY LEU ILE ALA ASP ILE LYS ALA LEU VAL PRO SEQRES 22 A 450 PRO TYR VAL ARG ILE SER ARG VAL LEU ARG ASP ILE PRO SEQRES 23 A 450 ALA VAL PHE ILE SER ALA GLY LEU LYS ASP SER LEU ARG SEQRES 24 A 450 ASP GLY VAL ARG GLN ILE LEU GLU SER ARG HIS GLN LYS SEQRES 25 A 450 CYS ARG CYS ILE ARG CYS ARG GLU TYR GLY HIS ARG GLN SEQRES 26 A 450 ARG LYS GLY GLN THR SER GLY GLU PRO THR LEU ARG ARG SEQRES 27 A 450 LEU ASP TYR PRO ALA SER GLY GLY LYS GLU ILE PHE LEU SEQRES 28 A 450 SER PHE GLU ASP ALA SER ASP THR LEU TYR GLY LEU LEU SEQRES 29 A 450 ARG LEU ARG ILE PRO CYS ALA SER LEU PRO VAL LEU GLY SEQRES 30 A 450 GLN LYS TYR GLY ALA LYS THR GLY LEU VAL ARG ALA LEU SEQRES 31 A 450 HIS VAL GLY SER GLY SER GLY ARG GLY LEU GLY ARG LYS SEQRES 32 A 450 LEU LEU ALA GLU ALA GLU CYS LEU ALA ARG ASP GLU PHE SEQRES 33 A 450 GLY LEU ASP SER LEU ALA ILE LEU SER GLY VAL GLY ALA SEQRES 34 A 450 ARG GLU TYR TYR ARG SER LEU GLY TYR GLU LEU VAL ALA SEQRES 35 A 450 GLY TYR MET CYS LYS HIS LEU ASP HET DCA A 501 79 HET FES A 502 4 HET PO4 A 503 5 HETNAM DCA DESULFO-COENZYME A HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM PO4 PHOSPHATE ION FORMUL 2 DCA C21 H36 N7 O16 P3 FORMUL 3 FES FE2 S2 FORMUL 4 PO4 O4 P 3- HELIX 1 AA1 THR A 36 THR A 41 5 6 HELIX 2 AA2 SER A 44 CYS A 53 1 10 HELIX 3 AA3 GLN A 56 MET A 71 1 16 HELIX 4 AA4 THR A 86 ALA A 90 5 5 HELIX 5 AA5 ASP A 91 GLY A 108 1 18 HELIX 6 AA6 SER A 113 GLU A 122 1 10 HELIX 7 AA7 GLY A 141 PHE A 151 1 11 HELIX 8 AA8 ARG A 176 TYR A 190 1 15 HELIX 9 AA9 SER A 206 PHE A 218 1 13 HELIX 10 AB1 THR A 239 GLU A 247 1 9 HELIX 11 AB2 PRO A 254 VAL A 269 1 16 HELIX 12 AB3 GLY A 396 ASP A 411 1 16 HELIX 13 AB4 GLY A 423 GLY A 425 5 3 HELIX 14 AB5 ALA A 426 SER A 432 1 7 SHEET 1 AA1 7 THR A 12 MET A 17 0 SHEET 2 AA1 7 LYS A 77 GLY A 85 1 O LYS A 77 N THR A 12 SHEET 3 AA1 7 ARG A 127 THR A 135 1 O CYS A 132 N LEU A 80 SHEET 4 AA1 7 ARG A 155 GLN A 161 1 O GLU A 157 N THR A 135 SHEET 5 AA1 7 LYS A 193 TRP A 198 1 O HIS A 195 N LEU A 158 SHEET 6 AA1 7 GLY A 227 LEU A 230 1 O LYS A 229 N TYR A 196 SHEET 7 AA1 7 ARG A 274 SER A 276 1 O SER A 276 N LEU A 228 SHEET 1 AA2 7 THR A 332 ALA A 340 0 SHEET 2 AA2 7 GLY A 343 GLU A 351 -1 O PHE A 347 N LEU A 336 SHEET 3 AA2 7 LEU A 357 ILE A 365 -1 O LEU A 363 N ILE A 346 SHEET 4 AA2 7 THR A 381 HIS A 388 -1 O ARG A 385 N ARG A 362 SHEET 5 AA2 7 SER A 417 ILE A 420 1 O SER A 417 N GLY A 382 SHEET 6 AA2 7 TYR A 441 LYS A 444 -1 O MET A 442 N ILE A 420 SHEET 7 AA2 7 GLU A 436 VAL A 438 -1 N VAL A 438 O TYR A 441 LINK SG CYS A 30 FE2 FES A 502 1555 1555 2.31 SITE 1 AC1 13 LYS A 77 VAL A 129 LYS A 193 LEU A 387 SITE 2 AC1 13 HIS A 388 VAL A 389 GLY A 394 GLY A 396 SITE 3 AC1 13 GLY A 398 ARG A 399 GLY A 425 ALA A 426 SITE 4 AC1 13 TYR A 429 SITE 1 AC2 3 CYS A 27 TYR A 29 CYS A 30 SITE 1 AC3 3 LYS A 193 ARG A 274 ARG A 362 CRYST1 73.540 160.740 92.990 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010754 0.00000