HEADER TRANSFERASE 28-NOV-18 6IAZ TITLE THE ARCHAEAL METHANOCALDOCOCCUS INFERNUS ELP3 WITH N-TERMINUS DELETION TITLE 2 (1-46) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE, ELP3 FAMILY; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.48; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE ARCHAEAL METHANOCALDOCOCCUS INFERNUS ELP3 WITH N- COMPND 7 TERMINUS DELETION (1-46) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS INFERNUS; SOURCE 3 ORGANISM_TAXID: 67760; SOURCE 4 GENE: METIN_0452; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TRNA BINDING, ELONGATOR COMPLEX, NON-CANONICAL ACETYLTRANSFERASE, KEYWDS 2 ACETYL-COA HYDROLYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.Y.LIN,S.GLATT REVDAT 2 24-JAN-24 6IAZ 1 REMARK REVDAT 1 20-FEB-19 6IAZ 0 JRNL AUTH T.Y.LIN,N.E.H.ABBASSI,K.ZAKRZEWSKI,A.CHRAMIEC-GLABIK, JRNL AUTH 2 M.JEMIOLA-RZEMINSKA,J.ROZYCKI,S.GLATT JRNL TITL THE ELONGATOR SUBUNIT ELP3 IS A NON-CANONICAL TRNA JRNL TITL 2 ACETYLTRANSFERASE. JRNL REF NAT COMMUN V. 10 625 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30733442 JRNL DOI 10.1038/S41467-019-08579-2 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8235 - 4.6849 1.00 2889 153 0.2096 0.2019 REMARK 3 2 4.6849 - 3.7199 1.00 2684 141 0.1561 0.1901 REMARK 3 3 3.7199 - 3.2501 1.00 2693 142 0.1758 0.1955 REMARK 3 4 3.2501 - 2.9531 1.00 2628 138 0.1944 0.2140 REMARK 3 5 2.9531 - 2.7415 1.00 2606 137 0.1973 0.2210 REMARK 3 6 2.7415 - 2.5799 1.00 2618 138 0.1995 0.2354 REMARK 3 7 2.5799 - 2.4508 1.00 2592 136 0.1975 0.2490 REMARK 3 8 2.4508 - 2.3441 1.00 2576 136 0.2044 0.2362 REMARK 3 9 2.3441 - 2.2539 1.00 2575 136 0.1927 0.2420 REMARK 3 10 2.2539 - 2.1761 1.00 2565 134 0.2076 0.2211 REMARK 3 11 2.1761 - 2.1081 1.00 2579 135 0.2107 0.2478 REMARK 3 12 2.1081 - 2.0478 1.00 2574 136 0.2342 0.2660 REMARK 3 13 2.0478 - 1.9939 1.00 2566 135 0.2514 0.3098 REMARK 3 14 1.9939 - 1.9453 1.00 2557 134 0.2658 0.2908 REMARK 3 15 1.9453 - 1.9011 0.98 2515 133 0.3246 0.3292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3569 REMARK 3 ANGLE : 0.825 4793 REMARK 3 CHIRALITY : 0.051 512 REMARK 3 PLANARITY : 0.005 601 REMARK 3 DIHEDRAL : 16.522 2192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9467 -8.0482 -11.4697 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.2485 REMARK 3 T33: 0.2578 T12: -0.0105 REMARK 3 T13: 0.0342 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 6.1896 L22: 2.9466 REMARK 3 L33: 3.1474 L12: 2.0683 REMARK 3 L13: 0.2065 L23: -0.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: -0.2525 S13: 0.0357 REMARK 3 S21: 0.3795 S22: -0.1653 S23: 0.1590 REMARK 3 S31: 0.1289 S32: -0.1893 S33: 0.0698 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5947 15.9786 -9.3354 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.3525 REMARK 3 T33: 0.2629 T12: -0.0595 REMARK 3 T13: -0.0027 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.7678 L22: 2.9270 REMARK 3 L33: 3.4643 L12: -0.5705 REMARK 3 L13: -0.3881 L23: 1.7087 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.3673 S13: 0.1573 REMARK 3 S21: 0.3367 S22: -0.1965 S23: 0.1200 REMARK 3 S31: 0.0205 S32: -0.2577 S33: 0.1403 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 369 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0995 18.8821 -26.6999 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.2936 REMARK 3 T33: 0.2787 T12: 0.0268 REMARK 3 T13: -0.0116 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.6955 L22: 8.5685 REMARK 3 L33: 6.6645 L12: 3.3915 REMARK 3 L13: 3.7377 L23: 7.2457 REMARK 3 S TENSOR REMARK 3 S11: -0.1318 S12: -0.0885 S13: 0.2982 REMARK 3 S21: 0.0495 S22: 0.0137 S23: 0.1993 REMARK 3 S31: -0.0757 S32: -0.0609 S33: 0.0434 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7557 -0.8150 -32.4028 REMARK 3 T TENSOR REMARK 3 T11: 0.2091 T22: 0.2430 REMARK 3 T33: 0.2587 T12: -0.0056 REMARK 3 T13: 0.0131 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.5378 L22: 2.9110 REMARK 3 L33: 1.5905 L12: -0.7280 REMARK 3 L13: -0.1943 L23: -0.5818 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.1328 S13: -0.3182 REMARK 3 S21: -0.1343 S22: -0.0275 S23: 0.2008 REMARK 3 S31: 0.1803 S32: -0.0948 S33: 0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200013093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5L7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE (PH 3.8), 0.1 M LICL AND REMARK 280 17% PEG6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.03000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.67500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.51500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.67500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 187.54500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.51500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 187.54500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.03000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 ALA A 44 REMARK 465 MET A 45 REMARK 465 ALA A 46 REMARK 465 SER A 47 REMARK 465 ASN A 48 REMARK 465 SER A 49 REMARK 465 GLU A 50 REMARK 465 ILE A 51 REMARK 465 LEU A 52 REMARK 465 LYS A 53 REMARK 465 TYR A 54 REMARK 465 ALA A 55 REMARK 465 THR A 56 REMARK 465 GLU A 57 REMARK 465 GLU A 58 REMARK 465 GLU A 59 REMARK 465 LYS A 60 REMARK 465 LYS A 61 REMARK 465 ILE A 62 REMARK 465 LEU A 63 REMARK 465 ILE A 64 REMARK 465 PRO A 65 REMARK 465 ILE A 66 REMARK 465 LEU A 67 REMARK 465 ARG A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 PRO A 71 REMARK 465 VAL A 72 REMARK 465 ARG A 73 REMARK 465 ALA A 88 REMARK 465 LYS A 89 REMARK 465 CYS A 90 REMARK 465 PRO A 91 REMARK 465 HIS A 92 REMARK 465 GLY A 93 REMARK 465 LYS A 94 REMARK 465 CYS A 95 REMARK 465 ILE A 96 REMARK 465 PHE A 97 REMARK 465 CYS A 98 REMARK 465 PRO A 99 REMARK 465 GLY A 100 REMARK 465 GLY A 101 REMARK 465 LEU A 102 REMARK 465 ASP A 103 REMARK 465 SER A 104 REMARK 465 VAL A 105 REMARK 465 PHE A 106 REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 465 VAL A 109 REMARK 465 PRO A 110 REMARK 465 GLN A 111 REMARK 465 SER A 112 REMARK 465 TYR A 113 REMARK 465 THR A 114 REMARK 465 GLY A 115 REMARK 465 ARG A 116 REMARK 465 GLU A 117 REMARK 465 PRO A 118 REMARK 465 ALA A 119 REMARK 465 THR A 120 REMARK 465 MET A 121 REMARK 465 ARG A 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 125 CG SD CE REMARK 470 LYS A 143 CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 198 CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 242 CD CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 LYS A 319 CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 ARG A 350 NE CZ NH1 NH2 REMARK 470 ARG A 353 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 365 CE NZ REMARK 470 ARG A 383 NE CZ NH1 NH2 REMARK 470 LYS A 399 CD CE NZ REMARK 470 LYS A 455 CD CE NZ REMARK 470 GLU A 468 CD OE1 OE2 REMARK 470 GLU A 477 CB CG CD OE1 OE2 REMARK 470 LYS A 491 CD CE NZ REMARK 470 LYS A 524 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 385 O2 SO4 A 604 1.47 REMARK 500 OD2 ASP A 299 HH22 ARG A 460 1.52 REMARK 500 O HOH A 848 O HOH A 854 1.84 REMARK 500 O HOH A 806 O HOH A 837 2.02 REMARK 500 O HOH A 838 O HOH A 857 2.03 REMARK 500 NH1 ARG A 385 O HOH A 701 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 725 O HOH A 735 6454 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 460 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 460 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 212 46.09 -98.43 REMARK 500 GLN A 234 -62.33 69.97 REMARK 500 PHE A 296 -99.73 -114.91 REMARK 500 TYR A 445 -67.24 -103.24 REMARK 500 TRP A 467 133.19 -39.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 DBREF 6IAZ A 47 534 UNP D5VRB9 D5VRB9_METIM 47 534 SEQADV 6IAZ GLY A 43 UNP D5VRB9 EXPRESSION TAG SEQADV 6IAZ ALA A 44 UNP D5VRB9 EXPRESSION TAG SEQADV 6IAZ MET A 45 UNP D5VRB9 EXPRESSION TAG SEQADV 6IAZ ALA A 46 UNP D5VRB9 EXPRESSION TAG SEQRES 1 A 492 GLY ALA MET ALA SER ASN SER GLU ILE LEU LYS TYR ALA SEQRES 2 A 492 THR GLU GLU GLU LYS LYS ILE LEU ILE PRO ILE LEU ARG SEQRES 3 A 492 LYS LYS PRO VAL ARG THR ILE SER GLY VAL ALA VAL VAL SEQRES 4 A 492 ALA VAL MET THR SER PRO ALA LYS CYS PRO HIS GLY LYS SEQRES 5 A 492 CYS ILE PHE CYS PRO GLY GLY LEU ASP SER VAL PHE GLY SEQRES 6 A 492 ASP VAL PRO GLN SER TYR THR GLY ARG GLU PRO ALA THR SEQRES 7 A 492 MET ARG GLY LEU MET PHE ASN PHE ASP PRO TYR LEU GLN SEQRES 8 A 492 THR ARG ALA ARG ILE GLU GLN LEU GLU LYS VAL GLY HIS SEQRES 9 A 492 PRO THR ASP LYS ILE GLU LEU ILE ILE MET GLY GLY THR SEQRES 10 A 492 PHE PRO ALA ARG GLU ILE GLU TYR GLN ASP TRP PHE ILE SEQRES 11 A 492 LYS ARG CYS LEU ASP ALA MET ASN GLU ARG GLU SER LYS SEQRES 12 A 492 SER LEU GLU GLU ALA GLN LYS ILE ASN GLU THR ALA LYS SEQRES 13 A 492 HIS ARG CYS VAL ALA LEU CYS ILE GLU THR ARG PRO ASP SEQRES 14 A 492 TYR CYS SER GLU LYS GLU ILE ASN GLN MET LEU LYS LEU SEQRES 15 A 492 GLY ALA THR ARG VAL GLU LEU GLY VAL GLN SER ILE TYR SEQRES 16 A 492 ASN GLU ILE LEU LYS LEU CYS LYS ARG GLY HIS SER VAL SEQRES 17 A 492 GLU ASP THR ILE LYS ALA THR GLN LEU LEU LYS ASP SER SEQRES 18 A 492 GLY LEU LYS VAL SER TYR HIS LEU MET PRO GLY MET PRO SEQRES 19 A 492 GLY SER SER ILE GLU MET ASP LYS LYS MET PHE LYS GLU SEQRES 20 A 492 ILE PHE THR ASN PRO ASP PHE MET PRO ASP MET VAL LYS SEQRES 21 A 492 ILE TYR PRO CYS LEU VAL ILE GLU GLY THR GLU LEU TYR SEQRES 22 A 492 GLU MET TRP LYS ARG GLY GLU PHE LYS PRO TYR ARG GLU SEQRES 23 A 492 GLU GLU ALA ILE GLU VAL ILE SER TYR ALA LYS SER ILE SEQRES 24 A 492 MET PRO LYS TRP VAL ARG THR SER ARG ILE GLN ARG ASP SEQRES 25 A 492 ILE PRO ALA THR VAL ILE VAL ASP GLY VAL LYS LYS SER SEQRES 26 A 492 ASN LEU GLY GLU LEU VAL TYR LYS TYR MET GLU LYS LYS SEQRES 27 A 492 GLY LEU ARG CYS ARG CYS ILE ARG CYS ARG GLU VAL GLY SEQRES 28 A 492 HIS VAL TYR TYR LYS LYS GLY ILE LEU PRO ASP PRO GLU SEQRES 29 A 492 HIS ILE LYS LEU VAL ARG GLU ASP TYR GLU ALA SER GLY SEQRES 30 A 492 GLY THR GLU ILE PHE LEU SER PHE GLU ASP VAL LYS ASN SEQRES 31 A 492 ASP ILE LEU ILE ALA PHE LEU ARG LEU ARG ASP PRO TYR SEQRES 32 A 492 LYS PRO PHE ARG LYS GLU ILE ASP ASP LYS THR MET LEU SEQRES 33 A 492 VAL ARG GLN LEU HIS VAL PHE GLY TRP GLU LYS ALA LEU SEQRES 34 A 492 THR ARG ASP ILE LYS GLU VAL SER TRP GLN HIS MET GLY SEQRES 35 A 492 TYR GLY ARG MET LEU MET LYS GLU ALA GLU ARG ILE ALA SEQRES 36 A 492 LYS GLU GLU PHE GLY LYS LYS LYS ILE LEU VAL THR SER SEQRES 37 A 492 GLY ILE GLY VAL ARG GLU TYR TYR ARG LYS LEU GLY TYR SEQRES 38 A 492 LYS ARG VAL GLY ALA TYR MET GLY LYS GLU LEU HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 HOH *163(H2 O) HELIX 1 AA1 ASP A 129 VAL A 144 1 16 HELIX 2 AA2 THR A 159 ARG A 163 5 5 HELIX 3 AA3 GLU A 164 GLU A 181 1 18 HELIX 4 AA4 SER A 186 GLU A 195 1 10 HELIX 5 AA5 SER A 214 GLY A 225 1 12 HELIX 6 AA6 TYR A 237 CYS A 244 1 8 HELIX 7 AA7 SER A 249 ASP A 262 1 14 HELIX 8 AA8 SER A 279 ASN A 293 1 15 HELIX 9 AA9 THR A 312 ARG A 320 1 9 HELIX 10 AB1 ARG A 327 MET A 342 1 16 HELIX 11 AB2 ASN A 368 GLY A 381 1 14 HELIX 12 AB3 CYS A 386 GLU A 391 1 6 HELIX 13 AB4 GLU A 391 GLY A 400 1 10 HELIX 14 AB5 ASP A 404 GLU A 406 5 3 HELIX 15 AB6 GLY A 484 GLU A 500 1 17 HELIX 16 AB7 GLY A 511 GLY A 513 5 3 HELIX 17 AB8 VAL A 514 LEU A 521 1 8 SHEET 1 AA1 3 ILE A 75 SER A 76 0 SHEET 2 AA1 3 GLU A 468 LYS A 469 -1 O LYS A 469 N ILE A 75 SHEET 3 AA1 3 GLU A 477 VAL A 478 -1 O VAL A 478 N GLU A 468 SHEET 1 AA2 7 ALA A 79 MET A 84 0 SHEET 2 AA2 7 LYS A 150 MET A 156 1 O LYS A 150 N ALA A 79 SHEET 3 AA2 7 ARG A 200 THR A 208 1 O ARG A 200 N ILE A 151 SHEET 4 AA2 7 ARG A 228 GLN A 234 1 O GLU A 230 N THR A 208 SHEET 5 AA2 7 LYS A 266 LEU A 271 1 O HIS A 270 N GLN A 234 SHEET 6 AA2 7 MET A 300 ILE A 303 1 O LYS A 302 N LEU A 271 SHEET 7 AA2 7 ARG A 347 THR A 348 1 O ARG A 347 N VAL A 301 SHEET 1 AA3 2 VAL A 308 ILE A 309 0 SHEET 2 AA3 2 ILE A 360 ASP A 362 -1 O VAL A 361 N VAL A 308 SHEET 1 AA4 7 ILE A 408 ALA A 417 0 SHEET 2 AA4 7 GLY A 420 ASP A 429 -1 O SER A 426 N VAL A 411 SHEET 3 AA4 7 ILE A 434 ASP A 443 -1 O LEU A 441 N ILE A 423 SHEET 4 AA4 7 THR A 456 VAL A 464 -1 O LEU A 458 N ARG A 442 SHEET 5 AA4 7 LYS A 505 VAL A 508 1 O LEU A 507 N VAL A 459 SHEET 6 AA4 7 TYR A 529 GLU A 533 -1 O MET A 530 N VAL A 508 SHEET 7 AA4 7 LYS A 524 VAL A 526 -1 N LYS A 524 O GLY A 531 SSBOND 1 CYS A 384 CYS A 389 1555 1555 2.05 SITE 1 AC1 6 SER A 76 VAL A 78 HIS A 463 PHE A 465 SITE 2 AC1 6 GLY A 466 HOH A 708 SITE 1 AC2 4 ARG A 209 ARG A 246 GLY A 247 HIS A 248 SITE 1 AC3 9 HIS A 482 MET A 483 GLY A 484 TYR A 485 SITE 2 AC3 9 GLY A 486 ARG A 487 TYR A 517 HOH A 707 SITE 3 AC3 9 HOH A 783 SITE 1 AC4 7 PRO A 343 LYS A 344 ARG A 385 GLU A 413 SITE 2 AC4 7 THR A 472 ARG A 473 ASP A 474 SITE 1 AC5 4 TRP A 170 LYS A 173 ARG A 174 GLU A 183 SITE 1 AC6 3 ARG A 519 LYS A 524 ARG A 525 CRYST1 63.350 63.350 250.060 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015785 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003999 0.00000