HEADER TRANSCRIPTION/DNA 09-SEP-18 6IDE TITLE CRYSTAL STRUCTURE OF THE VIBRIO CHOLERA VQMA-LIGAND-DNA COMPLEX TITLE 2 PROVIDES MOLECULAR MECHANISMS FOR DRUG DESIGN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR LUXR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 75-319; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*AP*GP*GP*GP*GP*GP*GP*AP*AP*AP*TP*CP*CP*CP*CP*CP*CP*T)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*AP*GP*GP*GP*GP*GP*GP*AP*TP*TP*TP*CP*CP*CP*CP*CP*CP*T)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 9 ORGANISM_TAXID: 666; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 13 ORGANISM_TAXID: 666 KEYWDS VIBRIO CHOLERA, QUORUM SENSING, TRANSCRIPTION REGULATOR, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.WU,M.J.LI,H.J.GUO,H.ZHOU,B.LI,Q.XU,C.Y.XU,F.YU,J.H.HE REVDAT 3 27-MAR-24 6IDE 1 REMARK REVDAT 2 06-MAR-19 6IDE 1 JRNL REVDAT 1 16-JAN-19 6IDE 0 JRNL AUTH H.WU,M.LI,H.GUO,H.ZHOU,B.LI,Q.XU,C.XU,F.YU,J.HE JRNL TITL CRYSTAL STRUCTURE OF THEVIBRIO CHOLERAEVQMA-LIGAND-DNA JRNL TITL 2 COMPLEX PROVIDES INSIGHT INTO LIGAND-BINDING MECHANISMS JRNL TITL 3 RELEVANT FOR DRUG DESIGN. JRNL REF J. BIOL. CHEM. V. 294 2580 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30610119 JRNL DOI 10.1074/JBC.RA118.006082 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0286 28.1955 6.5193 REMARK 3 T TENSOR REMARK 3 T11: 0.6732 T22: 0.8795 REMARK 3 T33: 0.7361 T12: 0.0239 REMARK 3 T13: -0.0207 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 3.7627 L22: 2.0229 REMARK 3 L33: 1.5507 L12: -0.8093 REMARK 3 L13: 0.1852 L23: -1.0623 REMARK 3 S TENSOR REMARK 3 S11: 0.3235 S12: 0.8063 S13: -0.1302 REMARK 3 S21: -0.4440 S22: -0.1245 S23: -0.1514 REMARK 3 S31: -0.1152 S32: 0.1537 S33: -0.1059 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0121 28.9001 17.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.6362 T22: 0.7733 REMARK 3 T33: 0.7376 T12: -0.0056 REMARK 3 T13: 0.0436 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.6416 L22: 2.4117 REMARK 3 L33: 2.5851 L12: 0.3288 REMARK 3 L13: -0.0076 L23: 0.9399 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.1112 S13: -0.0451 REMARK 3 S21: -0.2728 S22: -0.0471 S23: -0.1833 REMARK 3 S31: -0.1802 S32: 0.2494 S33: 0.1111 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5027 31.1542 41.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.8295 T22: 0.8942 REMARK 3 T33: 0.7546 T12: 0.0859 REMARK 3 T13: 0.0635 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.5078 L22: 4.8318 REMARK 3 L33: 3.1798 L12: 0.9479 REMARK 3 L13: 0.8120 L23: 1.3934 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.0400 S13: 0.1442 REMARK 3 S21: 0.5850 S22: 0.1597 S23: -0.0336 REMARK 3 S31: 0.0443 S32: -0.3616 S33: -0.2452 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1970 33.2156 41.5039 REMARK 3 T TENSOR REMARK 3 T11: 0.7964 T22: 0.6705 REMARK 3 T33: 0.6759 T12: 0.0493 REMARK 3 T13: 0.0271 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 1.9943 L22: 2.7818 REMARK 3 L33: 3.2825 L12: -0.5906 REMARK 3 L13: -0.2864 L23: -0.7738 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: -0.0347 S13: 0.0620 REMARK 3 S21: 0.6368 S22: -0.0200 S23: 0.2453 REMARK 3 S31: -0.4710 S32: -0.2160 S33: -0.0575 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6474 23.6111 15.8805 REMARK 3 T TENSOR REMARK 3 T11: 0.5973 T22: 0.8084 REMARK 3 T33: 0.6794 T12: -0.0761 REMARK 3 T13: 0.0802 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 3.5036 L22: 1.3375 REMARK 3 L33: 2.6229 L12: -0.3296 REMARK 3 L13: 1.3707 L23: -1.1374 REMARK 3 S TENSOR REMARK 3 S11: -0.1179 S12: -0.1948 S13: -0.1401 REMARK 3 S21: -0.2148 S22: 0.1010 S23: 0.0945 REMARK 3 S31: 0.3820 S32: -0.7617 S33: 0.0320 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8553 15.4933 42.0268 REMARK 3 T TENSOR REMARK 3 T11: 0.9753 T22: 0.8434 REMARK 3 T33: 0.9314 T12: 0.0602 REMARK 3 T13: 0.0611 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 2.0369 L22: 2.9225 REMARK 3 L33: 2.8912 L12: -0.0844 REMARK 3 L13: 0.3257 L23: -1.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.1001 S13: -0.3336 REMARK 3 S21: 0.3389 S22: -0.0359 S23: -0.3071 REMARK 3 S31: 0.3514 S32: 0.1130 S33: -0.0072 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9142 4.4158 59.2026 REMARK 3 T TENSOR REMARK 3 T11: 2.0477 T22: 0.9099 REMARK 3 T33: 1.1261 T12: -0.2149 REMARK 3 T13: -0.0584 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 1.1599 L22: 0.9343 REMARK 3 L33: 0.1767 L12: 0.0621 REMARK 3 L13: -0.4407 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: 0.2012 S12: -0.1702 S13: 0.6226 REMARK 3 S21: 0.9095 S22: 0.1201 S23: -0.5930 REMARK 3 S31: -0.1015 S32: -0.1110 S33: -0.3009 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8626 25.8520 63.5266 REMARK 3 T TENSOR REMARK 3 T11: 1.8763 T22: 1.1426 REMARK 3 T33: 0.9961 T12: -0.0831 REMARK 3 T13: -0.1009 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.8430 L22: 5.2634 REMARK 3 L33: 2.4810 L12: 1.0276 REMARK 3 L13: -0.1761 L23: 0.3141 REMARK 3 S TENSOR REMARK 3 S11: 0.8740 S12: -0.4808 S13: -0.1035 REMARK 3 S21: 1.7903 S22: -1.2177 S23: -0.4155 REMARK 3 S31: 0.4439 S32: -0.1268 S33: 0.2144 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0054 49.0272 63.5779 REMARK 3 T TENSOR REMARK 3 T11: 2.1894 T22: 1.1457 REMARK 3 T33: 0.9884 T12: 0.0927 REMARK 3 T13: 0.0491 T23: -0.1302 REMARK 3 L TENSOR REMARK 3 L11: 0.9461 L22: 4.4928 REMARK 3 L33: 4.7214 L12: -1.1691 REMARK 3 L13: 1.3528 L23: 1.2358 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.1313 S13: 0.1864 REMARK 3 S21: 0.9615 S22: -0.3382 S23: 0.9071 REMARK 3 S31: 0.9911 S32: 0.8255 S33: 0.3844 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7334 42.7974 59.1657 REMARK 3 T TENSOR REMARK 3 T11: 1.6873 T22: 1.1636 REMARK 3 T33: 1.1485 T12: 0.1557 REMARK 3 T13: -0.0690 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.0403 L22: 1.4165 REMARK 3 L33: 1.7091 L12: -0.0935 REMARK 3 L13: 0.0542 L23: 0.4439 REMARK 3 S TENSOR REMARK 3 S11: 0.1216 S12: 0.0636 S13: -0.9884 REMARK 3 S21: 1.4644 S22: 0.1049 S23: 0.3358 REMARK 3 S31: -1.7372 S32: -0.2576 S33: -0.3541 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5630 21.0106 63.3849 REMARK 3 T TENSOR REMARK 3 T11: 1.9664 T22: 1.0567 REMARK 3 T33: 1.0249 T12: -0.1195 REMARK 3 T13: -0.0266 T23: 0.1485 REMARK 3 L TENSOR REMARK 3 L11: 2.5088 L22: 3.5382 REMARK 3 L33: 2.1358 L12: 1.8247 REMARK 3 L13: 0.8551 L23: 0.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.5950 S12: -0.4771 S13: -0.1376 REMARK 3 S21: 1.8757 S22: -0.8572 S23: -0.6016 REMARK 3 S31: -0.2955 S32: -0.3819 S33: 0.2188 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4113 -1.7320 63.3538 REMARK 3 T TENSOR REMARK 3 T11: 2.0273 T22: 1.2805 REMARK 3 T33: 1.2753 T12: -0.1889 REMARK 3 T13: -0.2234 T23: 0.2370 REMARK 3 L TENSOR REMARK 3 L11: 0.4128 L22: 6.4398 REMARK 3 L33: 5.5980 L12: 1.1136 REMARK 3 L13: -1.2318 L23: -0.7423 REMARK 3 S TENSOR REMARK 3 S11: -0.2065 S12: -0.9730 S13: 0.4118 REMARK 3 S21: 1.4931 S22: -0.9097 S23: -1.8902 REMARK 3 S31: -0.8813 S32: -0.2139 S33: 0.9691 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 53.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.85% POLYETHYLENE GLYCOL (PEG) 3350 REMARK 280 AND 0.165 M K2HPO4/NAH2PO4 PH 7.5, EVAPORATION, TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 465 SER A 142 REMARK 465 THR A 143 REMARK 465 THR A 144 REMARK 465 PHE A 145 REMARK 465 LYS A 146 REMARK 465 SER A 147 REMARK 465 VAL A 148 REMARK 465 ALA A 149 REMARK 465 ASP A 150 REMARK 465 ARG A 151 REMARK 465 ASP A 152 REMARK 465 LYS A 239 REMARK 465 LYS A 240 REMARK 465 VAL A 241 REMARK 465 ASP A 242 REMARK 465 VAL A 243 REMARK 465 VAL A 244 REMARK 465 ALA A 245 REMARK 465 GLN A 246 REMARK 465 LEU A 247 REMARK 465 LEU A 248 REMARK 465 GLU A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 LYS B 146 REMARK 465 SER B 147 REMARK 465 VAL B 148 REMARK 465 ALA B 149 REMARK 465 ASP B 150 REMARK 465 ARG B 151 REMARK 465 ASP B 152 REMARK 465 ILE B 237 REMARK 465 PRO B 238 REMARK 465 LYS B 239 REMARK 465 LYS B 240 REMARK 465 VAL B 241 REMARK 465 ASP B 242 REMARK 465 VAL B 243 REMARK 465 VAL B 244 REMARK 465 ALA B 245 REMARK 465 GLN B 246 REMARK 465 LEU B 247 REMARK 465 LEU B 248 REMARK 465 GLU B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 108 CG CD OE1 NE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 ILE B 49 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 106 -168.95 -111.21 REMARK 500 VAL A 187 47.13 -76.32 REMARK 500 GLU A 188 -42.97 -152.79 REMARK 500 TYR A 190 -52.34 -149.03 REMARK 500 ILE B 126 -86.12 -117.44 REMARK 500 HIS B 235 66.32 -100.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1U A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1U B 301 DBREF1 6IDE A 2 246 UNP A0A0H6WEL7_VIBCL DBREF2 6IDE A A0A0H6WEL7 75 319 DBREF1 6IDE B 2 246 UNP A0A0H6WEL7_VIBCL DBREF2 6IDE B A0A0H6WEL7 75 319 DBREF 6IDE C 1 18 PDB 6IDE 6IDE 1 18 DBREF 6IDE D 1 18 PDB 6IDE 6IDE 1 18 SEQADV 6IDE MET A 0 UNP A0A0H6WEL INITIATING METHIONINE SEQADV 6IDE LYS A 1 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE LEU A 247 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE LEU A 248 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE GLU A 249 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS A 250 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS A 251 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS A 252 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS A 253 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS A 254 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS A 255 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE MET B 0 UNP A0A0H6WEL INITIATING METHIONINE SEQADV 6IDE LYS B 1 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE LEU B 247 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE LEU B 248 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE GLU B 249 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS B 250 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS B 251 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS B 252 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS B 253 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS B 254 UNP A0A0H6WEL EXPRESSION TAG SEQADV 6IDE HIS B 255 UNP A0A0H6WEL EXPRESSION TAG SEQRES 1 A 256 MET LYS PRO ASN HIS LEU THR LEU GLU GLN ILE SER LEU SEQRES 2 A 256 PHE LYS GLN LEU PRO GLY TYR TRP GLY CYS LYS ASP LEU SEQRES 3 A 256 ASN SER VAL PHE VAL TYR ALA ASN GLN ALA TYR GLY GLU SEQRES 4 A 256 LEU ILE GLY LEU LYS ARG ALA GLU ASP CYS ILE GLY ARG SEQRES 5 A 256 THR ASP PHE GLU MET PRO SER PRO THR ALA ALA CYS ALA SEQRES 6 A 256 ALA GLU PHE GLN GLN GLN ASP ARG TYR VAL ILE GLU THR SEQRES 7 A 256 GLY HIS SER VAL LYS VAL LEU ASP ILE HIS PRO TYR PRO SEQRES 8 A 256 ASP GLY HIS TRP HIS ALA HIS ILE PHE THR LYS THR PRO SEQRES 9 A 256 TRP ARG ASP SER GLN GLY LYS ILE GLN GLY THR ILE PHE SEQRES 10 A 256 PHE GLY GLN ASP LEU THR ASP THR ALA ILE LEU GLU VAL SEQRES 11 A 256 GLY HIS TRP VAL CYS ARG ALA THR GLY LEU SER THR SER SEQRES 12 A 256 THR THR PHE LYS SER VAL ALA ASP ARG ASP THR LEU LYS SEQRES 13 A 256 LEU THR ALA ARG GLU SER GLU VAL LEU PHE LEU LEU LEU SEQRES 14 A 256 TYR GLY LYS LYS PRO GLN HIS ILE ALA ARG VAL MET GLY SEQRES 15 A 256 ILE SER ILE LYS THR VAL GLU GLY TYR GLU ALA LYS LEU SEQRES 16 A 256 ARG SER LYS PHE GLY ALA LEU SER LYS ASP GLN LEU ILE SEQRES 17 A 256 ASP LEU ALA LEU ASP ARG GLY PHE GLY SER VAL ILE PRO SEQRES 18 A 256 LYS THR LEU LEU ARG LYS GLN LEU SER VAL VAL LEU SER SEQRES 19 A 256 ASP HIS THR ILE PRO LYS LYS VAL ASP VAL VAL ALA GLN SEQRES 20 A 256 LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 256 MET LYS PRO ASN HIS LEU THR LEU GLU GLN ILE SER LEU SEQRES 2 B 256 PHE LYS GLN LEU PRO GLY TYR TRP GLY CYS LYS ASP LEU SEQRES 3 B 256 ASN SER VAL PHE VAL TYR ALA ASN GLN ALA TYR GLY GLU SEQRES 4 B 256 LEU ILE GLY LEU LYS ARG ALA GLU ASP CYS ILE GLY ARG SEQRES 5 B 256 THR ASP PHE GLU MET PRO SER PRO THR ALA ALA CYS ALA SEQRES 6 B 256 ALA GLU PHE GLN GLN GLN ASP ARG TYR VAL ILE GLU THR SEQRES 7 B 256 GLY HIS SER VAL LYS VAL LEU ASP ILE HIS PRO TYR PRO SEQRES 8 B 256 ASP GLY HIS TRP HIS ALA HIS ILE PHE THR LYS THR PRO SEQRES 9 B 256 TRP ARG ASP SER GLN GLY LYS ILE GLN GLY THR ILE PHE SEQRES 10 B 256 PHE GLY GLN ASP LEU THR ASP THR ALA ILE LEU GLU VAL SEQRES 11 B 256 GLY HIS TRP VAL CYS ARG ALA THR GLY LEU SER THR SER SEQRES 12 B 256 THR THR PHE LYS SER VAL ALA ASP ARG ASP THR LEU LYS SEQRES 13 B 256 LEU THR ALA ARG GLU SER GLU VAL LEU PHE LEU LEU LEU SEQRES 14 B 256 TYR GLY LYS LYS PRO GLN HIS ILE ALA ARG VAL MET GLY SEQRES 15 B 256 ILE SER ILE LYS THR VAL GLU GLY TYR GLU ALA LYS LEU SEQRES 16 B 256 ARG SER LYS PHE GLY ALA LEU SER LYS ASP GLN LEU ILE SEQRES 17 B 256 ASP LEU ALA LEU ASP ARG GLY PHE GLY SER VAL ILE PRO SEQRES 18 B 256 LYS THR LEU LEU ARG LYS GLN LEU SER VAL VAL LEU SER SEQRES 19 B 256 ASP HIS THR ILE PRO LYS LYS VAL ASP VAL VAL ALA GLN SEQRES 20 B 256 LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 18 DA DG DG DG DG DG DG DA DA DA DT DC DC SEQRES 2 C 18 DC DC DC DC DT SEQRES 1 D 18 DA DG DG DG DG DG DG DA DT DT DT DC DC SEQRES 2 D 18 DC DC DC DC DT HET A1U A 301 9 HET A1U B 301 9 HETNAM A1U 3,5-DIMETHYLPYRAZIN-2-OL FORMUL 5 A1U 2(C6 H8 N2 O) FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 THR A 6 LEU A 16 1 11 HELIX 2 AA2 ASN A 33 GLY A 41 1 9 HELIX 3 AA3 ARG A 44 ILE A 49 5 6 HELIX 4 AA4 THR A 52 MET A 56 5 5 HELIX 5 AA5 SER A 58 ALA A 62 5 5 HELIX 6 AA6 CYS A 63 GLY A 78 1 16 HELIX 7 AA7 LEU A 127 THR A 137 1 11 HELIX 8 AA8 THR A 157 TYR A 169 1 13 HELIX 9 AA9 LYS A 172 GLY A 181 1 10 HELIX 10 AB1 TYR A 190 PHE A 198 1 9 HELIX 11 AB2 SER A 202 ARG A 213 1 12 HELIX 12 AB3 GLY A 214 VAL A 218 5 5 HELIX 13 AB4 PRO A 220 LEU A 224 5 5 HELIX 14 AB5 THR B 6 LYS B 14 1 9 HELIX 15 AB6 ASN B 33 ILE B 40 1 8 HELIX 16 AB7 ARG B 44 ILE B 49 5 6 HELIX 17 AB8 THR B 52 MET B 56 5 5 HELIX 18 AB9 SER B 58 ALA B 62 5 5 HELIX 19 AC1 CYS B 63 GLY B 78 1 16 HELIX 20 AC2 THR B 122 THR B 124 5 3 HELIX 21 AC3 LEU B 127 ARG B 135 1 9 HELIX 22 AC4 THR B 157 TYR B 169 1 13 HELIX 23 AC5 LYS B 172 GLY B 181 1 10 HELIX 24 AC6 SER B 183 PHE B 198 1 16 HELIX 25 AC7 SER B 202 ARG B 213 1 12 HELIX 26 AC8 GLY B 214 VAL B 218 5 5 HELIX 27 AC9 PRO B 220 LEU B 224 5 5 SHEET 1 AA1 6 PHE A 29 ALA A 32 0 SHEET 2 AA1 6 TYR A 19 ASP A 24 -1 N CYS A 22 O VAL A 30 SHEET 3 AA1 6 ILE A 111 ASP A 120 -1 O GLY A 118 N TYR A 19 SHEET 4 AA1 6 TRP A 94 ARG A 105 -1 N TRP A 104 O GLN A 112 SHEET 5 AA1 6 SER A 80 PRO A 88 -1 N ASP A 85 O HIS A 97 SHEET 6 AA1 6 LEU A 228 HIS A 235 -1 O LEU A 232 N LYS A 82 SHEET 1 AA2 6 PHE B 29 ALA B 32 0 SHEET 2 AA2 6 TYR B 19 ASP B 24 -1 N CYS B 22 O VAL B 30 SHEET 3 AA2 6 ILE B 111 ASP B 120 -1 O GLY B 118 N TYR B 19 SHEET 4 AA2 6 TRP B 94 ARG B 105 -1 N TRP B 104 O GLN B 112 SHEET 5 AA2 6 VAL B 81 PRO B 88 -1 N ASP B 85 O HIS B 97 SHEET 6 AA2 6 LEU B 228 LEU B 232 -1 O LEU B 232 N LYS B 82 SITE 1 AC1 10 LYS A 23 PHE A 29 TYR A 36 ASP A 53 SITE 2 AC1 10 PHE A 67 ASP A 85 TYR A 89 PHE A 99 SITE 3 AC1 10 LYS A 101 HOH A 403 SITE 1 AC2 9 LYS B 23 PHE B 29 TYR B 36 ASP B 53 SITE 2 AC2 9 PHE B 67 ASP B 85 TYR B 89 PHE B 99 SITE 3 AC2 9 LYS B 101 CRYST1 52.780 108.980 214.320 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004666 0.00000