HEADER IMMUNE SYSTEM 10-SEP-18 6IDG TITLE ANTIBODY 64M-5 FAB IN COMPLEX WITH DT(6-4)T COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-5 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-5 FAB (HEAVY CHAIN); COMPND 6 CHAIN: H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: DNA (5'-D(*(64T)P*(5PY))-3'); COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 STRAIN: BALB/C; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_TAXID: 10090; SOURCE 8 STRAIN: BALB/C; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS DNA (6-4) PHOTOPRODUCT, IMMUNOGLOBULIN, FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.YOKOYAMA,R.MIZUTANI,S.NOGUCHI,N.HAYASHIDA REVDAT 3 22-NOV-23 6IDG 1 REMARK REVDAT 2 20-NOV-19 6IDG 1 JRNL REVDAT 1 13-FEB-19 6IDG 0 JRNL AUTH H.YOKOYAMA,R.MIZUTANI,S.NOGUCHI,N.HAYASHIDA JRNL TITL STRUCTURES OF THE ANTIBODY 64M-5 FAB AND ITS COMPLEX WITH JRNL TITL 2 DT(6-4)T INDICATE INDUCED-FIT AND HIGH-AFFINITY MECHANISMS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 75 80 2019 JRNL REFN ESSN 2053-230X JRNL PMID 30713158 JRNL DOI 10.1107/S2053230X18017661 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YOKOYAMA,R.MIZUTANI,Y.SATOW REMARK 1 TITL STRUCTURE OF A DOUBLE-STRANDED DNA (6-4) PHOTOPRODUCT IN REMARK 1 TITL 2 COMPLEX WITH THE 64M-5 ANTIBODY FAB REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 69 504 2013 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 23519658 REMARK 1 DOI 10.1107/S0907444912050007 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.YOKOYAMA,R.MIZUTANI,Y.SATOW,Y.KOMATSU,E.OHTSUKA,O.NIKAIDO REMARK 1 TITL CRYSTAL STRUCTURE OF THE 64M-2 ANTIBODY FAB FRAGMENT IN REMARK 1 TITL 2 COMPLEX WITH A DNA DT(6-4)T PHOTOPRODUCT FORMED BY REMARK 1 TITL 3 ULTRAVIOLET RADIATION REMARK 1 REF J. MOL. BIOL. V. 299 711 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 10835279 REMARK 1 DOI 10.1006/JMBI.2000.3772 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 72552.570 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 26313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2596 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3007 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 332 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3360 REMARK 3 NUCLEIC ACID ATOMS : 37 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.52000 REMARK 3 B22 (A**2) : -7.29000 REMARK 3 B33 (A**2) : 13.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.010 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 56.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR/PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR/DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ~/64M5DS18/CNS/TOPPAR/T64B.PAR REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR/WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR/PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR/DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : ~/64M5DS18/CNS/TOPPAR/T64B.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR/WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 6IDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1EHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG2000, 0.5 M LITHIUM SULFATE, REMARK 280 0.1 M SODIUM CITRATE (PH 3.5), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.83300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.43250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.83300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.43250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 187 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 2 54.37 28.69 REMARK 500 VAL L 51 -51.87 74.47 REMARK 500 HIS L 93 113.36 -6.93 REMARK 500 VAL L 94 71.27 70.18 REMARK 500 LYS L 199 6.81 -58.10 REMARK 500 ARG L 211 21.83 -71.04 REMARK 500 ALA H 100J -178.52 174.09 REMARK 500 ASN H 135 -122.58 -108.45 REMARK 500 ASP H 183 17.42 56.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 527 DISTANCE = 6.17 ANGSTROMS DBREF 6IDG L 1 213 PDB 6IDG 6IDG 1 213 DBREF 6IDG H 1 229 PDB 6IDG 6IDG 1 229 DBREF 6IDG A 1 2 PDB 6IDG 6IDG 1 2 SEQRES 1 L 217 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 217 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 217 GLN ASN ILE VAL HIS SER ASN GLY TYR THR TYR LEU GLU SEQRES 4 L 217 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 217 ILE TYR THR VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 217 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 217 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 217 TYR CYS PHE ARG GLY SER HIS VAL PRO THR PHE GLY GLY SEQRES 9 L 217 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 217 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 217 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 217 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 217 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 217 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 217 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 217 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 217 ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 H 221 GLU VAL GLN LEU GLN GLN SER GLY THR VAL LEU ALA ARG SEQRES 2 H 221 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR ASN TYR TRP MET HIS TRP ILE LYS GLN SEQRES 4 H 221 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY THR ILE TYR SEQRES 5 H 221 PRO GLY ASN SER ASP THR THR TYR SER GLN LYS PHE LYS SEQRES 6 H 221 GLY LYS ALA LYS LEU THR ALA VAL THR SER THR SER THR SEQRES 7 H 221 ALA TYR MET GLU LEU SER SER LEU THR ASN GLU ASP SER SEQRES 8 H 221 ALA VAL TYR TYR CYS SER ARG ARG ASN TYR GLY SER SER SEQRES 9 H 221 TYR ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL THR SEQRES 10 H 221 VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 H 221 LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL SEQRES 12 H 221 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 H 221 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 H 221 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 H 221 THR LEU SER SER SER VAL THR VAL PRO SER SER THR TRP SEQRES 16 H 221 PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 H 221 SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP SEQRES 1 A 2 64T 5PY HET 64T A 1 18 HET 5PY A 2 19 HETNAM 64T 5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE HETNAM 5PY 1-(2'-DEOXY-5'-O-PHOSPHONO-BETA-D-ERYTHRO- HETNAM 2 5PY PENTOFURANOSYL)-5-METHYLPYRIMIDIN-2(1H)-ONE FORMUL 3 64T C10 H17 N2 O9 P FORMUL 3 5PY C10 H15 N2 O7 P FORMUL 4 HOH *383(H2 O) HELIX 1 AA1 GLU L 79 LEU L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 HIS L 189 1 7 HELIX 4 AA4 THR H 28 TYR H 32 5 5 HELIX 5 AA5 GLN H 61 LYS H 64 5 4 HELIX 6 AA6 THR H 73 THR H 75 5 3 HELIX 7 AA7 THR H 83 SER H 87 5 5 HELIX 8 AA8 SER H 128 THR H 134 5 5 HELIX 9 AA9 SER H 163 SER H 165 5 3 HELIX 10 AB1 PRO H 213 SER H 216 5 4 SHEET 1 AA1 4 MET L 4 THR L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 AA2 6 SER L 10 SER L 14 0 SHEET 2 AA2 6 THR L 102 LYS L 107 1 O LYS L 103 N LEU L 11 SHEET 3 AA2 6 GLY L 84 ARG L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA2 6 LYS L 45 TYR L 49 -1 O LYS L 45 N LEU L 37 SHEET 6 AA2 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA3 4 SER L 10 SER L 14 0 SHEET 2 AA3 4 THR L 102 LYS L 107 1 O LYS L 103 N LEU L 11 SHEET 3 AA3 4 GLY L 84 ARG L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N ARG L 90 SHEET 1 AA4 4 THR L 114 PHE L 118 0 SHEET 2 AA4 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 AA4 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 4 SER L 153 ARG L 155 0 SHEET 2 AA5 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AA5 4 SER L 191 THR L 197 -1 O THR L 193 N LYS L 149 SHEET 4 AA5 4 ILE L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AA6 4 GLN H 3 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA6 4 THR H 77 LEU H 82 -1 O LEU H 82 N VAL H 18 SHEET 4 AA6 4 ALA H 67 VAL H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA7 6 VAL H 10 ALA H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 10 SHEET 3 AA7 6 ALA H 88 ARG H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA7 6 MET H 34 ARG H 40 -1 N HIS H 35 O SER H 93 SHEET 5 AA7 6 GLY H 44 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA7 6 THR H 57 TYR H 59 -1 O THR H 58 N THR H 50 SHEET 1 AA8 4 VAL H 10 ALA H 12 0 SHEET 2 AA8 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 10 SHEET 3 AA8 4 ALA H 88 ARG H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA8 4 MET H 100K TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 MET H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 AA9 4 LEU H 184 PRO H 194 -1 O VAL H 193 N VAL H 138 SHEET 4 AA9 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 190 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 MET H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 AB1 4 LEU H 184 PRO H 194 -1 O VAL H 193 N VAL H 138 SHEET 4 AB1 4 VAL H 177 GLN H 179 -1 N VAL H 177 O THR H 186 SHEET 1 AB2 3 THR H 153 TRP H 157 0 SHEET 2 AB2 3 THR H 207 HIS H 212 -1 O ASN H 209 N THR H 156 SHEET 3 AB2 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.03 LINK O3' 64T A 1 P 5PY A 2 1555 1555 1.61 LINK C6 64T A 1 C4 5PY A 2 1555 1555 1.55 CISPEP 1 THR L 7 PRO L 8 0 -0.14 CISPEP 2 TYR L 140 PRO L 141 0 0.17 CISPEP 3 PHE H 148 PRO H 149 0 0.00 CISPEP 4 GLU H 150 PRO H 151 0 0.22 CISPEP 5 TRP H 200 PRO H 202 0 0.34 CRYST1 84.620 100.865 51.666 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019355 0.00000