HEADER VIRAL PROTEIN 12-SEP-18 6IDZ TITLE CRYSTAL STRUCTURE OF H7 HEMAGGLUTININ MUTANT H7-SVTQ ( A138S, P221T, TITLE 2 L226Q) WITH 3'SLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 9 ORGANISM_TAXID: 11320; SOURCE 10 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS INFLUENZA VIRUS; H7N9; HEMAGGLUTININ, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.F.GAO,Y.XU,J.X.QI REVDAT 5 30-OCT-24 6IDZ 1 REMARK REVDAT 4 22-NOV-23 6IDZ 1 HETSYN LINK REVDAT 3 29-JUL-20 6IDZ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 04-DEC-19 6IDZ 1 JRNL REVDAT 1 27-NOV-19 6IDZ 0 JRNL AUTH Y.XU,R.PENG,W.ZHANG,J.QI,H.SONG,S.LIU,H.WANG,M.WANG,H.XIAO, JRNL AUTH 2 L.FU,Z.FAN,Y.BI,J.YAN,Y.SHI,G.F.GAO JRNL TITL AVIAN-TO-HUMAN RECEPTOR-BINDING ADAPTATION OF AVIAN H7N9 JRNL TITL 2 INFLUENZA VIRUS HEMAGGLUTININ. JRNL REF CELL REP V. 29 2217 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31747596 JRNL DOI 10.1016/J.CELREP.2019.10.047 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 18284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3790 - 5.1771 1.00 3006 183 0.2096 0.2364 REMARK 3 2 5.1771 - 4.1098 1.00 2906 156 0.1775 0.1937 REMARK 3 3 4.1098 - 3.5905 1.00 2889 150 0.1943 0.2486 REMARK 3 4 3.5905 - 3.2623 1.00 2858 160 0.2304 0.3200 REMARK 3 5 3.2623 - 3.0285 1.00 2873 147 0.2783 0.3322 REMARK 3 6 3.0285 - 2.8500 0.70 2007 104 0.3207 0.3617 REMARK 3 7 2.8500 - 2.7073 0.28 803 42 0.3314 0.3792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3935 REMARK 3 ANGLE : 0.526 5325 REMARK 3 CHIRALITY : 0.041 583 REMARK 3 PLANARITY : 0.010 701 REMARK 3 DIHEDRAL : 16.806 1477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.2470 12.0052 56.6788 REMARK 3 T TENSOR REMARK 3 T11: -0.0526 T22: -0.0005 REMARK 3 T33: 0.1560 T12: -0.1043 REMARK 3 T13: -0.0662 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 1.6306 L22: 1.2875 REMARK 3 L33: 0.3505 L12: -0.1275 REMARK 3 L13: -0.2985 L23: -0.1407 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: -0.1076 S13: 0.1693 REMARK 3 S21: 0.2355 S22: -0.0072 S23: -0.1009 REMARK 3 S31: -0.1981 S32: -0.0101 S33: -0.0012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V SOKALAN PA 25 CL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.05050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.51547 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 98.75833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.05050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.51547 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 98.75833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.05050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.51547 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 98.75833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.05050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.51547 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 98.75833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.05050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.51547 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 98.75833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.05050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.51547 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 98.75833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.03094 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 197.51667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.03094 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 197.51667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.03094 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 197.51667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.03094 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 197.51667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.03094 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 197.51667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.03094 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 197.51667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 318 REMARK 465 LYS A 319 REMARK 465 GLY A 320 REMARK 465 ARG A 321 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 PHE B 3 REMARK 465 GLY B 4 REMARK 465 ALA B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 ILE B 171 REMARK 465 GLN B 172 REMARK 465 ILE B 173 REMARK 465 ASP B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 LYS B 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 140.19 -170.15 REMARK 500 THR A 18 -169.41 -129.88 REMARK 500 PRO A 39 45.70 -74.66 REMARK 500 GLU A 71 54.77 -140.50 REMARK 500 SER A 118 -103.96 -94.95 REMARK 500 SER A 132 -79.98 61.29 REMARK 500 SER A 135 -159.12 -133.72 REMARK 500 THR A 147 -84.00 -112.65 REMARK 500 ASN A 199 39.67 -154.37 REMARK 500 GLN A 201 13.29 -143.63 REMARK 500 THR A 212 -163.35 -70.98 REMARK 500 ASN A 239 22.93 -142.81 REMARK 500 SER A 255 -167.07 -161.76 REMARK 500 GLU B 11 33.65 -149.07 REMARK 500 LEU B 17 83.15 -69.97 REMARK 500 ASN B 28 -85.63 -131.72 REMARK 500 ALA B 29 -35.48 -130.91 REMARK 500 ARG B 127 -125.78 57.86 REMARK 500 PHE B 141 52.65 -94.31 REMARK 500 ASP B 145 -169.92 -74.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE SUBSTRATE ANALOG REMARK 630 MOLECULE NAME: 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 NAG A 401 REMARK 630 NAG B 201 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REFERENCE R4NN21_9INFA WAS USED ACCORDING TO AUTHOR'S REMARK 999 SUGGESTION. AUTHOR STATED HEMAGGLUTININ USED IN THIS STUDAY, WHICH REMARK 999 WAS DERIVED FROM AH1-H7N9 VIRUS, WAS IDENTICAL WITH R4NN21_9INFA. DBREF 6IDZ A 1 321 UNP R4NN21 R4NN21_9INFA 19 339 DBREF 6IDZ B 1 177 UNP R4NN21 R4NN21_9INFA 340 516 SEQADV 6IDZ SER A 128 UNP R4NN21 ALA 146 ENGINEERED MUTATION SEQADV 6IDZ THR A 212 UNP R4NN21 PRO 230 ENGINEERED MUTATION SEQADV 6IDZ GLN A 217 UNP R4NN21 LEU 235 ENGINEERED MUTATION SEQRES 1 A 321 ASP LYS ILE CYS LEU GLY HIS HIS ALA VAL SER ASN GLY SEQRES 2 A 321 THR LYS VAL ASN THR LEU THR GLU ARG GLY VAL GLU VAL SEQRES 3 A 321 VAL ASN ALA THR GLU THR VAL GLU ARG THR ASN ILE PRO SEQRES 4 A 321 ARG ILE CYS SER LYS GLY LYS ARG THR VAL ASP LEU GLY SEQRES 5 A 321 GLN CYS GLY LEU LEU GLY THR ILE THR GLY PRO PRO GLN SEQRES 6 A 321 CYS ASP GLN PHE LEU GLU PHE SER ALA ASP LEU ILE ILE SEQRES 7 A 321 GLU ARG ARG GLU GLY SER ASP VAL CYS TYR PRO GLY LYS SEQRES 8 A 321 PHE VAL ASN GLU GLU ALA LEU ARG GLN ILE LEU ARG GLU SEQRES 9 A 321 SER GLY GLY ILE ASP LYS GLU ALA MET GLY PHE THR TYR SEQRES 10 A 321 SER GLY ILE ARG THR ASN GLY ALA THR SER SER CYS ARG SEQRES 11 A 321 ARG SER GLY SER SER PHE TYR ALA GLU MET LYS TRP LEU SEQRES 12 A 321 LEU SER ASN THR ASP ASN ALA ALA PHE PRO GLN MET THR SEQRES 13 A 321 LYS SER TYR LYS ASN THR ARG LYS SER PRO ALA LEU ILE SEQRES 14 A 321 VAL TRP GLY ILE HIS HIS SER VAL SER THR ALA GLU GLN SEQRES 15 A 321 THR LYS LEU TYR GLY SER GLY ASN LYS LEU VAL THR VAL SEQRES 16 A 321 GLY SER SER ASN TYR GLN GLN SER PHE VAL PRO SER PRO SEQRES 17 A 321 GLY ALA ARG THR GLN VAL ASN GLY GLN SER GLY ARG ILE SEQRES 18 A 321 ASP PHE HIS TRP LEU MET LEU ASN PRO ASN ASP THR VAL SEQRES 19 A 321 THR PHE SER PHE ASN GLY ALA PHE ILE ALA PRO ASP ARG SEQRES 20 A 321 ALA SER PHE LEU ARG GLY LYS SER MET GLY ILE GLN SER SEQRES 21 A 321 GLY VAL GLN VAL ASP ALA ASN CYS GLU GLY ASP CYS TYR SEQRES 22 A 321 HIS SER GLY GLY THR ILE ILE SER ASN LEU PRO PHE GLN SEQRES 23 A 321 ASN ILE ASP SER ARG ALA VAL GLY LYS CYS PRO ARG TYR SEQRES 24 A 321 VAL LYS GLN ARG SER LEU LEU LEU ALA THR GLY MET LYS SEQRES 25 A 321 ASN VAL PRO GLU ILE PRO LYS GLY ARG SEQRES 1 B 177 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 177 TRP GLU GLY LEU ILE ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 177 GLN ASN ALA GLN GLY GLU GLY THR ALA ALA ASP TYR LYS SEQRES 4 B 177 SER THR GLN SER ALA ILE ASP GLN ILE THR GLY LYS LEU SEQRES 5 B 177 ASN ARG LEU ILE GLU LYS THR ASN GLN GLN PHE GLU LEU SEQRES 6 B 177 ILE ASP ASN GLU PHE ASN GLU VAL GLU LYS GLN ILE GLY SEQRES 7 B 177 ASN VAL ILE ASN TRP THR ARG ASP SER ILE THR GLU VAL SEQRES 8 B 177 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA MET GLU ASN SEQRES 9 B 177 GLN HIS THR ILE ASP LEU ALA ASP SER GLU MET ASP LYS SEQRES 10 B 177 LEU TYR GLU ARG VAL LYS ARG GLN LEU ARG GLU ASN ALA SEQRES 11 B 177 GLU GLU ASP GLY THR GLY CYS PHE GLU ILE PHE HIS LYS SEQRES 12 B 177 CYS ASP ASP ASP CYS MET ALA SER ILE ARG ASN ASN THR SEQRES 13 B 177 TYR ASP HIS SER LYS TYR ARG GLU GLU ALA MET GLN ASN SEQRES 14 B 177 ARG ILE GLN ILE ASP PRO VAL LYS HET NAG C 1 15 HET GAL C 2 11 HET SIA C 3 20 HET NAG A 401 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 6 HOH *87(H2 O) HELIX 1 AA1 LEU A 57 GLY A 62 1 6 HELIX 2 AA2 PRO A 63 LEU A 70 5 8 HELIX 3 AA3 ASN A 94 GLU A 104 1 11 HELIX 4 AA4 SER A 178 GLY A 187 1 10 HELIX 5 AA5 GLN A 213 GLN A 217 5 5 HELIX 6 AA6 ASP B 37 GLU B 57 1 21 HELIX 7 AA7 GLU B 74 ARG B 127 1 54 HELIX 8 AA8 ASP B 145 ASN B 154 1 10 HELIX 9 AA9 TYR B 162 ARG B 170 1 9 SHEET 1 AA1 5 GLU B 32 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 GLN B 27 -1 N PHE B 24 O ALA B 35 SHEET 3 AA1 5 LYS A 2 HIS A 7 -1 N CYS A 4 O ARG B 25 SHEET 4 AA1 5 CYS B 137 ILE B 140 -1 O PHE B 138 N ILE A 3 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N GLU B 131 O GLU B 139 SHEET 1 AA2 2 THR A 14 ASN A 17 0 SHEET 2 AA2 2 ARG A 22 VAL A 26 -1 O VAL A 26 N THR A 14 SHEET 1 AA3 2 ALA A 29 GLU A 31 0 SHEET 2 AA3 2 LEU A 306 ALA A 308 -1 O LEU A 307 N THR A 30 SHEET 1 AA4 3 VAL A 33 GLU A 34 0 SHEET 2 AA4 3 PHE A 285 GLN A 286 1 O PHE A 285 N GLU A 34 SHEET 3 AA4 3 ARG A 298 TYR A 299 1 O ARG A 298 N GLN A 286 SHEET 1 AA5 2 ILE A 41 CYS A 42 0 SHEET 2 AA5 2 VAL A 264 ASP A 265 1 O ASP A 265 N ILE A 41 SHEET 1 AA6 3 THR A 48 ASP A 50 0 SHEET 2 AA6 3 LEU A 76 GLU A 79 1 O LEU A 76 N VAL A 49 SHEET 3 AA6 3 MET A 256 GLN A 259 1 O ILE A 258 N ILE A 77 SHEET 1 AA7 5 GLY A 90 PHE A 92 0 SHEET 2 AA7 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 AA7 5 ALA A 167 HIS A 175 -1 N ILE A 169 O LEU A 226 SHEET 4 AA7 5 ARG A 247 LEU A 251 -1 O SER A 249 N LEU A 168 SHEET 5 AA7 5 ILE A 108 ALA A 112 -1 N GLU A 111 O ALA A 248 SHEET 1 AA8 5 GLY A 90 PHE A 92 0 SHEET 2 AA8 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 AA8 5 ALA A 167 HIS A 175 -1 N ILE A 169 O LEU A 226 SHEET 4 AA8 5 PHE A 242 PRO A 245 -1 O ILE A 243 N GLY A 172 SHEET 5 AA8 5 MET A 140 LEU A 143 -1 N LYS A 141 O ALA A 244 SHEET 1 AA9 2 THR A 126 ARG A 130 0 SHEET 2 AA9 2 SER A 134 SER A 135 -1 O SER A 135 N CYS A 129 SHEET 1 AB1 4 MET A 155 LYS A 160 0 SHEET 2 AB1 4 THR A 233 PHE A 238 -1 O PHE A 236 N LYS A 157 SHEET 3 AB1 4 VAL A 193 GLY A 196 -1 N THR A 194 O SER A 237 SHEET 4 AB1 4 SER A 203 PHE A 204 -1 O PHE A 204 N VAL A 193 SHEET 1 AB2 3 GLY A 277 THR A 278 0 SHEET 2 AB2 3 CYS A 272 HIS A 274 -1 N HIS A 274 O GLY A 277 SHEET 3 AB2 3 VAL A 293 GLY A 294 -1 O VAL A 293 N TYR A 273 SSBOND 1 CYS A 4 CYS B 137 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 268 1555 1555 2.03 SSBOND 3 CYS A 54 CYS A 66 1555 1555 2.03 SSBOND 4 CYS A 87 CYS A 129 1555 1555 2.03 SSBOND 5 CYS A 272 CYS A 296 1555 1555 2.03 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN B 82 C1 NAG B 201 1555 1555 1.44 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.44 LINK O3 GAL C 2 C2 SIA C 3 1555 1555 1.48 CRYST1 116.101 116.101 296.275 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008613 0.004973 0.000000 0.00000 SCALE2 0.000000 0.009946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003375 0.00000