HEADER STRUCTURAL PROTEIN/IMMUNE SYSTEM 13-SEP-18 6IEA TITLE STRUCTURE OF RVFV GN AND HUMAN MONOCLONAL ANTIBODY R13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NSMGNGC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOPROTEIN N,GN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: R13 L CHAIN; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: R13 H CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RIFT VALLEY FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: RVFV; SOURCE 4 ORGANISM_TAXID: 11588; SOURCE 5 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS RVFV, ANTIBODY, STRUCTURAL PROTEIN, STRUCTURAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.H.WANG,Y.WU,F.GAO,J.X.QI,G.F.GAO REVDAT 2 10-JUL-19 6IEA 1 JRNL REVDAT 1 10-APR-19 6IEA 0 JRNL AUTH Q.WANG,T.MA,Y.WU,Z.CHEN,H.ZENG,Z.TONG,F.GAO,J.QI,Z.ZHAO, JRNL AUTH 2 Y.CHAI,H.YANG,G.WONG,Y.BI,L.WU,R.SHI,M.YANG,J.SONG,H.JIANG, JRNL AUTH 3 Z.AN,J.WANG,T.D.YILMA,Y.SHI,W.J.LIU,M.LIANG,C.QIN,G.F.GAO, JRNL AUTH 4 J.YAN JRNL TITL NEUTRALIZATION MECHANISM OF HUMAN MONOCLONAL ANTIBODIES JRNL TITL 2 AGAINST RIFT VALLEY FEVER VIRUS. JRNL REF NAT MICROBIOL V. 4 1231 2019 JRNL REFN ESSN 2058-5276 JRNL PMID 30936489 JRNL DOI 10.1038/S41564-019-0411-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 3 NUMBER OF REFLECTIONS : 51622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 2431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4683 - 5.1408 0.99 3464 180 0.1593 0.1808 REMARK 3 2 5.1408 - 4.0811 1.00 3439 182 0.1314 0.1673 REMARK 3 3 4.0811 - 3.5654 1.00 3424 154 0.1587 0.2036 REMARK 3 4 3.5654 - 3.2395 1.00 3416 159 0.1861 0.2534 REMARK 3 5 3.2395 - 3.0073 1.00 3422 151 0.1955 0.2355 REMARK 3 6 3.0073 - 2.8300 1.00 3402 182 0.2050 0.2621 REMARK 3 7 2.8300 - 2.6883 1.00 3426 174 0.2040 0.2402 REMARK 3 8 2.6883 - 2.5713 0.99 3337 196 0.2067 0.2626 REMARK 3 9 2.5713 - 2.4723 0.98 3297 173 0.2024 0.2296 REMARK 3 10 2.4723 - 2.3870 0.91 3103 147 0.2109 0.2921 REMARK 3 11 2.3870 - 2.3124 0.85 2882 130 0.2078 0.2571 REMARK 3 12 2.3124 - 2.2463 0.79 2698 121 0.2025 0.2340 REMARK 3 13 2.2463 - 2.1871 0.71 2407 136 0.2115 0.2788 REMARK 3 14 2.1871 - 2.1338 0.65 2221 101 0.2082 0.2639 REMARK 3 15 2.1338 - 2.0853 0.59 2004 101 0.2095 0.2481 REMARK 3 16 2.0853 - 2.0409 0.52 1743 89 0.2164 0.3243 REMARK 3 17 2.0409 - 2.0001 0.44 1506 55 0.2244 0.2931 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5722 REMARK 3 ANGLE : 1.005 7785 REMARK 3 CHIRALITY : 0.056 856 REMARK 3 PLANARITY : 0.006 993 REMARK 3 DIHEDRAL : 4.071 3988 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:315 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4123 0.2699 164.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.1774 T22: 0.1060 REMARK 3 T33: 0.1682 T12: -0.0181 REMARK 3 T13: 0.0162 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.4835 L22: 2.4650 REMARK 3 L33: 2.1874 L12: -0.1233 REMARK 3 L13: 0.1528 L23: -0.7088 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.0766 S13: -0.0159 REMARK 3 S21: 0.3849 S22: -0.0566 S23: -0.1242 REMARK 3 S31: -0.2653 S32: 0.0655 S33: 0.0528 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN L AND RESID 2:209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5395 -17.8633 114.6149 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.3792 REMARK 3 T33: 0.2396 T12: 0.0263 REMARK 3 T13: -0.0504 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 0.2176 L22: 0.7959 REMARK 3 L33: 2.7045 L12: -0.0443 REMARK 3 L13: -0.7697 L23: 0.0366 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.3049 S13: -0.0715 REMARK 3 S21: -0.2436 S22: -0.0265 S23: 0.0829 REMARK 3 S31: 0.2955 S32: -0.4736 S33: 0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9043 -2.1888 116.9501 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.4587 REMARK 3 T33: 0.2327 T12: 0.0682 REMARK 3 T13: 0.0317 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.0604 L22: 1.0423 REMARK 3 L33: 1.5963 L12: -0.1065 REMARK 3 L13: 0.2134 L23: 0.6169 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: 0.3370 S13: -0.0451 REMARK 3 S21: -0.2927 S22: -0.0453 S23: -0.0069 REMARK 3 S31: -0.3458 S32: 0.1575 S33: -0.0329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMATE, 20% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.55350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 225 REMARK 465 GLY A 226 REMARK 465 GLN A 227 REMARK 465 TYR A 228 REMARK 465 LYS A 229 REMARK 465 GLY A 230 REMARK 465 THR A 231 REMARK 465 ILE A 232 REMARK 465 ASP A 233 REMARK 465 SER A 234 REMARK 465 GLY A 235 REMARK 465 GLN A 236 REMARK 465 THR A 237 REMARK 465 LYS A 238 REMARK 465 ARG A 239 REMARK 465 SER A 316 REMARK 465 SER H 139 REMARK 465 SER H 140 REMARK 465 LYS H 141 REMARK 465 SER H 142 REMARK 465 THR H 143 REMARK 465 SER H 144 REMARK 465 GLY H 145 REMARK 465 GLY H 146 REMARK 465 SER H 198 REMARK 465 SER H 199 REMARK 465 SER H 200 REMARK 465 LEU H 201 REMARK 465 GLY H 202 REMARK 465 THR H 203 REMARK 465 GLN H 204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR H 147 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER L 123 O HOH L 401 2.14 REMARK 500 O HOH A 594 O HOH A 697 2.14 REMARK 500 OD2 ASP A 2 O HOH A 501 2.15 REMARK 500 O HOH H 366 O HOH H 370 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 149 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 -62.42 -23.26 REMARK 500 ASN A 14 64.67 -119.15 REMARK 500 LYS A 177 151.04 177.44 REMARK 500 ALA A 274 -99.64 55.53 REMARK 500 ASP L 160 -107.38 52.84 REMARK 500 ASN L 179 -12.13 76.85 REMARK 500 SER H 15 -8.02 77.50 REMARK 500 ASP H 55 -125.48 48.45 REMARK 500 SER H 104 140.39 -170.59 REMARK 500 ARG H 106 -0.38 76.33 REMARK 500 ASP H 156 66.20 63.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 724 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 9.12 ANGSTROMS REMARK 525 HOH A 726 DISTANCE = 10.18 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG L 301 DBREF 6IEA A 1 316 UNP H9BSP3 H9BSP3_RVFV 154 469 DBREF 6IEA L 1 218 PDB 6IEA 6IEA 1 218 DBREF 6IEA H 1 225 PDB 6IEA 6IEA 1 225 SEQRES 1 A 316 GLU ASP PRO HIS LEU ARG ASN ARG PRO GLY LYS GLY HIS SEQRES 2 A 316 ASN TYR ILE ASP GLY MET THR GLN GLU ASP ALA THR CYS SEQRES 3 A 316 LYS PRO VAL THR TYR ALA GLY ALA CYS SER SER PHE ASP SEQRES 4 A 316 VAL LEU LEU GLU LYS GLY LYS PHE PRO LEU PHE GLN SER SEQRES 5 A 316 TYR ALA HIS HIS ARG THR LEU LEU GLU ALA VAL HIS ASP SEQRES 6 A 316 THR ILE ILE ALA LYS ALA ASP PRO PRO SER CYS ASP LEU SEQRES 7 A 316 GLN SER ALA HIS GLY ASN PRO CYS MET LYS GLU LYS LEU SEQRES 8 A 316 VAL MET LYS THR HIS CYS PRO ASN ASP TYR GLN SER ALA SEQRES 9 A 316 HIS TYR LEU ASN ASN ASP GLY LYS MET ALA SER VAL LYS SEQRES 10 A 316 CYS PRO PRO LYS TYR GLU LEU THR GLU ASP CYS ASN PHE SEQRES 11 A 316 CYS ARG GLN MET THR GLY ALA SER LEU LYS LYS GLY SER SEQRES 12 A 316 TYR PRO LEU GLN ASP LEU PHE CYS GLN SER SER GLU ASP SEQRES 13 A 316 ASP GLY SER LYS LEU LYS THR LYS MET LYS GLY VAL CYS SEQRES 14 A 316 GLU VAL GLY VAL GLN ALA LEU LYS LYS CYS ASP GLY GLN SEQRES 15 A 316 LEU SER THR ALA HIS GLU VAL VAL PRO PHE ALA VAL PHE SEQRES 16 A 316 LYS ASN SER LYS LYS VAL TYR LEU ASP LYS LEU ASP LEU SEQRES 17 A 316 LYS THR GLU GLU ASN LEU LEU PRO ASP SER PHE VAL CYS SEQRES 18 A 316 PHE GLU HIS LYS GLY GLN TYR LYS GLY THR ILE ASP SER SEQRES 19 A 316 GLY GLN THR LYS ARG GLU LEU LYS SER PHE ASP ILE SER SEQRES 20 A 316 GLN CYS PRO LYS ILE GLY GLY HIS GLY SER LYS LYS CYS SEQRES 21 A 316 THR GLY ASP ALA ALA PHE CYS SER ALA TYR GLU CYS THR SEQRES 22 A 316 ALA GLN TYR ALA ASN ALA TYR CYS SER HIS ALA ASN GLY SEQRES 23 A 316 SER GLY ILE VAL GLN ILE GLN VAL SER GLY VAL TRP LYS SEQRES 24 A 316 LYS PRO LEU CYS VAL GLY TYR GLU ARG VAL VAL VAL LYS SEQRES 25 A 316 ARG GLU LEU SER SEQRES 1 L 218 LEU PRO VAL LEU THR GLN PRO PRO SER SER SER ALA SER SEQRES 2 L 218 PRO GLY GLU SER ALA ARG LEU THR CYS THR LEU PRO SER SEQRES 3 L 218 ASP ILE ASN VAL GLY SER TYR ASN ILE TYR TRP TYR GLN SEQRES 4 L 218 GLN LYS PRO GLY SER PRO PRO ARG TYR LEU LEU TYR TYR SEQRES 5 L 218 TYR SER ASP SER ASP LYS GLY GLN GLY SER GLY VAL PRO SEQRES 6 L 218 SER ARG PHE SER GLY SER LYS ASP ALA SER ALA ASN THR SEQRES 7 L 218 GLY ILE LEU LEU ILE SER GLY LEU GLN SER GLU ASP GLU SEQRES 8 L 218 ALA ASP TYR TYR CYS MET ILE TRP PRO SER ASN ALA TRP SEQRES 9 L 218 VAL PHE GLY GLY GLY THR LYS LEU THR VAL LEU GLY GLN SEQRES 10 L 218 PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO PRO SER SEQRES 11 L 218 SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU VAL CYS SEQRES 12 L 218 LEU ILE SER ASP PHE TYR PRO GLY ALA VAL THR VAL ALA SEQRES 13 L 218 TRP LYS ALA ASP SER SER PRO VAL LYS ALA GLY VAL GLU SEQRES 14 L 218 THR THR THR PRO SER LYS GLN SER ASN ASN LYS TYR ALA SEQRES 15 L 218 ALA SER SER TYR LEU SER LEU THR PRO GLU GLN TRP LYS SEQRES 16 L 218 SER HIS ARG SER TYR SER CYS GLN VAL THR HIS GLU GLY SEQRES 17 L 218 SER THR VAL GLU LYS THR VAL ALA PRO THR SEQRES 1 H 225 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 225 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 225 GLY SER ILE SER SER GLY GLY TYR TYR TRP SER TRP ILE SEQRES 4 H 225 ARG GLN HIS PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR SEQRES 5 H 225 ILE TYR ASP SER GLY SER THR TYR TYR ASN PRO SER LEU SEQRES 6 H 225 LYS SER ARG VAL THR ILE SER VAL ASP THR SER LYS ASN SEQRES 7 H 225 GLN PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP SEQRES 8 H 225 THR ALA LEU TYR TYR CYS ALA SER LEU PRO TYR CYS SER SEQRES 9 H 225 GLY ARG ILE CYS ARG PRO ARG THR ASP TYR TRP GLY GLN SEQRES 10 H 225 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 225 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 225 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 225 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 225 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 225 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 225 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 225 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 225 ARG VAL GLU PRO HET GOL A 401 6 HET PEG L 301 7 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *376(H2 O) HELIX 1 AA1 GLU A 22 LYS A 27 1 6 HELIX 2 AA2 PHE A 38 GLU A 43 5 6 HELIX 3 AA3 PHE A 47 TYR A 53 1 7 HELIX 4 AA4 THR A 58 ASP A 65 1 8 HELIX 5 AA5 CYS A 86 VAL A 92 1 7 HELIX 6 AA6 LEU A 215 ASP A 217 5 3 HELIX 7 AA7 ASP A 245 CYS A 249 5 5 HELIX 8 AA8 ASP A 263 SER A 268 1 6 HELIX 9 AA9 THR A 273 ALA A 277 5 5 HELIX 10 AB1 ASN L 29 TYR L 33 5 5 HELIX 11 AB2 GLN L 87 GLU L 91 5 5 HELIX 12 AB3 SER L 130 ALA L 136 1 7 HELIX 13 AB4 THR L 190 SER L 196 1 7 HELIX 14 AB5 LEU H 65 SER H 67 5 3 HELIX 15 AB6 THR H 88 THR H 92 5 5 HELIX 16 AB7 SER H 168 ALA H 170 5 3 HELIX 17 AB8 LYS H 213 ASN H 216 5 4 SHEET 1 AA1 4 CYS A 76 ASP A 77 0 SHEET 2 AA1 4 MET A 113 LYS A 117 1 O SER A 115 N CYS A 76 SHEET 3 AA1 4 SER A 103 LEU A 107 -1 N TYR A 106 O ALA A 114 SHEET 4 AA1 4 TYR A 144 PRO A 145 1 O TYR A 144 N SER A 103 SHEET 1 AA2 2 TYR A 122 LEU A 124 0 SHEET 2 AA2 2 CYS A 131 GLN A 133 -1 O ARG A 132 N GLU A 123 SHEET 1 AA3 4 ASP A 148 CYS A 151 0 SHEET 2 AA3 4 CYS A 303 GLU A 314 -1 O VAL A 304 N PHE A 150 SHEET 3 AA3 4 VAL A 168 VAL A 171 -1 N GLU A 170 O LYS A 312 SHEET 4 AA3 4 GLN A 174 ALA A 175 -1 O GLN A 174 N VAL A 171 SHEET 1 AA4 4 ASP A 148 CYS A 151 0 SHEET 2 AA4 4 CYS A 303 GLU A 314 -1 O VAL A 304 N PHE A 150 SHEET 3 AA4 4 LEU A 183 VAL A 194 -1 N VAL A 190 O GLU A 307 SHEET 4 AA4 4 VAL A 201 TYR A 202 -1 O VAL A 201 N ALA A 193 SHEET 1 AA5 3 LEU A 208 GLU A 211 0 SHEET 2 AA5 3 ILE A 289 VAL A 294 -1 O GLN A 291 N LYS A 209 SHEET 3 AA5 3 VAL A 297 LYS A 299 -1 O VAL A 297 N VAL A 294 SHEET 1 AA6 3 PHE A 219 GLU A 223 0 SHEET 2 AA6 3 ALA A 279 HIS A 283 -1 O SER A 282 N VAL A 220 SHEET 3 AA6 3 CYS A 260 GLY A 262 1 N THR A 261 O CYS A 281 SHEET 1 AA7 6 SER L 9 ALA L 12 0 SHEET 2 AA7 6 THR L 110 VAL L 114 1 O LYS L 111 N SER L 10 SHEET 3 AA7 6 ALA L 92 ILE L 98 -1 N ALA L 92 O LEU L 112 SHEET 4 AA7 6 ILE L 35 GLN L 40 -1 N TYR L 38 O TYR L 95 SHEET 5 AA7 6 ARG L 47 SER L 54 -1 O LEU L 49 N TRP L 37 SHEET 6 AA7 6 ASP L 57 GLN L 60 -1 O ASP L 57 N TYR L 53 SHEET 1 AA8 4 SER L 9 ALA L 12 0 SHEET 2 AA8 4 THR L 110 VAL L 114 1 O LYS L 111 N SER L 10 SHEET 3 AA8 4 ALA L 92 ILE L 98 -1 N ALA L 92 O LEU L 112 SHEET 4 AA8 4 VAL L 105 PHE L 106 -1 O VAL L 105 N ILE L 98 SHEET 1 AA9 3 ALA L 18 THR L 23 0 SHEET 2 AA9 3 THR L 78 ILE L 83 -1 O GLY L 79 N CYS L 22 SHEET 3 AA9 3 PHE L 68 ASP L 73 -1 N SER L 69 O LEU L 82 SHEET 1 AB1 4 SER L 123 PHE L 127 0 SHEET 2 AB1 4 ALA L 139 PHE L 148 -1 O LEU L 144 N THR L 125 SHEET 3 AB1 4 TYR L 181 LEU L 189 -1 O ALA L 183 N ILE L 145 SHEET 4 AB1 4 VAL L 168 THR L 170 -1 N GLU L 169 O TYR L 186 SHEET 1 AB2 4 SER L 123 PHE L 127 0 SHEET 2 AB2 4 ALA L 139 PHE L 148 -1 O LEU L 144 N THR L 125 SHEET 3 AB2 4 TYR L 181 LEU L 189 -1 O ALA L 183 N ILE L 145 SHEET 4 AB2 4 SER L 174 LYS L 175 -1 N SER L 174 O ALA L 182 SHEET 1 AB3 4 SER L 162 VAL L 164 0 SHEET 2 AB3 4 THR L 154 ALA L 159 -1 N ALA L 159 O SER L 162 SHEET 3 AB3 4 TYR L 200 HIS L 206 -1 O THR L 205 N THR L 154 SHEET 4 AB3 4 SER L 209 VAL L 215 -1 O VAL L 211 N VAL L 204 SHEET 1 AB4 4 GLN H 3 SER H 7 0 SHEET 2 AB4 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AB4 4 GLN H 79 LEU H 84 -1 O LEU H 84 N LEU H 18 SHEET 4 AB4 4 VAL H 69 ASP H 74 -1 N ASP H 74 O GLN H 79 SHEET 1 AB5 6 LEU H 11 VAL H 12 0 SHEET 2 AB5 6 THR H 119 VAL H 123 1 O THR H 122 N VAL H 12 SHEET 3 AB5 6 ALA H 93 SER H 99 -1 N TYR H 95 O THR H 119 SHEET 4 AB5 6 TYR H 35 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 AB5 6 GLU H 48 TYR H 54 -1 O ILE H 50 N TRP H 38 SHEET 6 AB5 6 SER H 58 TYR H 61 -1 O TYR H 60 N TYR H 52 SHEET 1 AB6 4 LEU H 11 VAL H 12 0 SHEET 2 AB6 4 THR H 119 VAL H 123 1 O THR H 122 N VAL H 12 SHEET 3 AB6 4 ALA H 93 SER H 99 -1 N TYR H 95 O THR H 119 SHEET 4 AB6 4 TYR H 114 TRP H 115 -1 O TYR H 114 N SER H 99 SHEET 1 AB7 2 TYR H 102 SER H 104 0 SHEET 2 AB7 2 ILE H 107 ARG H 109 -1 O ARG H 109 N TYR H 102 SHEET 1 AB8 4 SER H 132 LEU H 136 0 SHEET 2 AB8 4 GLY H 151 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AB8 4 TYR H 188 VAL H 194 -1 O TYR H 188 N TYR H 157 SHEET 4 AB8 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 AB9 4 SER H 132 LEU H 136 0 SHEET 2 AB9 4 GLY H 151 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AB9 4 TYR H 188 VAL H 194 -1 O TYR H 188 N TYR H 157 SHEET 4 AB9 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AC1 3 THR H 163 TRP H 166 0 SHEET 2 AC1 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 AC1 3 THR H 217 ARG H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS A 26 CYS A 35 1555 1555 2.10 SSBOND 2 CYS A 76 CYS A 86 1555 1555 2.07 SSBOND 3 CYS A 97 CYS A 128 1555 1555 2.06 SSBOND 4 CYS A 118 CYS A 131 1555 1555 2.05 SSBOND 5 CYS A 151 CYS A 303 1555 1555 2.09 SSBOND 6 CYS A 169 CYS A 179 1555 1555 2.05 SSBOND 7 CYS A 221 CYS A 281 1555 1555 2.05 SSBOND 8 CYS A 249 CYS A 260 1555 1555 2.04 SSBOND 9 CYS A 267 CYS A 272 1555 1555 2.05 SSBOND 10 CYS L 22 CYS L 96 1555 1555 2.07 SSBOND 11 CYS L 143 CYS L 202 1555 1555 2.04 SSBOND 12 CYS H 22 CYS H 97 1555 1555 2.07 SSBOND 13 CYS H 103 CYS H 108 1555 1555 2.09 SSBOND 14 CYS H 152 CYS H 208 1555 1555 2.05 CISPEP 1 LYS A 27 PRO A 28 0 5.70 CISPEP 2 ASP A 72 PRO A 73 0 1.89 CISPEP 3 TYR L 149 PRO L 150 0 -1.41 CISPEP 4 ARG H 109 PRO H 110 0 -2.18 CISPEP 5 PHE H 158 PRO H 159 0 -5.62 CISPEP 6 GLU H 160 PRO H 161 0 -2.21 SITE 1 AC1 5 SER A 243 PHE A 244 ASP A 245 HOH A 610 SITE 2 AC1 5 HOH A 630 SITE 1 AC2 8 ASP A 23 HOH A 515 HOH A 552 TYR H 35 SITE 2 AC2 8 TYR H 52 TYR H 102 TRP L 99 ASN L 102 CRYST1 42.210 97.107 112.504 90.00 96.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023691 0.000000 0.002617 0.00000 SCALE2 0.000000 0.010298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008943 0.00000