HEADER VIRAL PROTEIN 16-SEP-18 6IEQ TITLE CRYSTAL STRUCTURE OF HIV-1 ENV CONM SOSIP.V7 IN COMPLEX WITH BNAB TITLE 2 PGT124 AND 35O22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PGT124 FAB LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: PGT124 FAB HEAVY CHAIN; COMPND 15 CHAIN: H; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: 35O22 FAB HEAVY CHAIN; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: 35O22 FAB LIGHT CHAIN; COMPND 23 CHAIN: E; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 8 ORGANISM_TAXID: 11676; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 21 MOL_ID: 5; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 26 MOL_ID: 6; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV-1, ENVELOP PROTEIN, CONSENSUS SEQUENCE-BASED CONM SOSIP, BROADLY KEYWDS 2 NEUTRALIZING ANTIBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.W.HAN,I.A.WILSON REVDAT 5 20-MAR-24 6IEQ 1 SOURCE REVDAT 4 22-NOV-23 6IEQ 1 HETSYN LINK REVDAT 3 29-JUL-20 6IEQ 1 COMPND SOURCE REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 12-JUN-19 6IEQ 1 JRNL REVDAT 1 22-MAY-19 6IEQ 0 JRNL AUTH K.SLIEPEN,B.W.HAN,I.BONTJER,P.MOOIJ,F.GARCES,A.J.BEHRENS, JRNL AUTH 2 K.RANTALAINEN,S.KUMAR,A.SARKAR,P.J.M.BROUWER,Y.HUA, JRNL AUTH 3 M.TOLAZZI,E.SCHERMER,J.L.TORRES,G.OZOROWSKI,P.VAN DER WOUDE, JRNL AUTH 4 A.T.DE LA PENA,M.J.VAN BREEMEN,J.M.CAMACHO-SANCHEZ, JRNL AUTH 5 J.A.BURGER,M.MEDINA-RAMIREZ,N.GONZALEZ,J.ALCAMI,C.LABRANCHE, JRNL AUTH 6 G.SCARLATTI,M.J.VAN GILS,M.CRISPIN,D.C.MONTEFIORI,A.B.WARD, JRNL AUTH 7 G.KOOPMAN,J.P.MOORE,R.J.SHATTOCK,W.M.BOGERS,I.A.WILSON, JRNL AUTH 8 R.W.SANDERS JRNL TITL STRUCTURE AND IMMUNOGENICITY OF A STABILIZED HIV-1 ENVELOPE JRNL TITL 2 TRIMER BASED ON A GROUP-M CONSENSUS SEQUENCE. JRNL REF NAT COMMUN V. 10 2355 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31142746 JRNL DOI 10.1038/S41467-019-10262-5 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 22323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1193 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.4540 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 625 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 247.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.64000 REMARK 3 B22 (A**2) : 8.64000 REMARK 3 B33 (A**2) : -28.01000 REMARK 3 B12 (A**2) : 4.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.890 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12166 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 10768 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16637 ; 1.320 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 25251 ; 3.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1439 ; 5.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 471 ;34.358 ;24.501 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1866 ;13.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;14.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2002 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12853 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2295 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5798 ; 7.614 ;25.504 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5797 ; 7.614 ;25.502 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7223 ;12.938 ;38.243 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 7224 ;12.937 ;38.245 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6368 ; 6.439 ;25.739 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6366 ; 6.437 ;25.737 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9414 ;11.382 ;38.544 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12511 ;18.464 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12512 ;18.463 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6IEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.93 - 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03315 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23583 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 17.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15000 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.07000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.07 M SODIUM ACETATE, 30% (V/V) REMARK 280 GLYCEROL, 6% (W/V) PEG 4000, PH 3.93, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 157.75350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 157.75350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 157.75350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, L, H, A, C, F, I, J, K, M, REMARK 350 AND CHAINS: N, O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET G -4 REMARK 465 ASP G -3 REMARK 465 ALA G -2 REMARK 465 MET G -1 REMARK 465 LYS G 0 REMARK 465 ARG G 1 REMARK 465 GLY G 2 REMARK 465 LEU G 3 REMARK 465 CYS G 4 REMARK 465 CYS G 5 REMARK 465 VAL G 6 REMARK 465 LEU G 7 REMARK 465 LEU G 8 REMARK 465 LEU G 9 REMARK 465 CYS G 10 REMARK 465 GLY G 11 REMARK 465 ALA G 12 REMARK 465 VAL G 13 REMARK 465 PHE G 14 REMARK 465 VAL G 15 REMARK 465 SER G 16 REMARK 465 PRO G 17 REMARK 465 SER G 18 REMARK 465 GLN G 19 REMARK 465 GLU G 20 REMARK 465 ILE G 21 REMARK 465 HIS G 22 REMARK 465 ALA G 23 REMARK 465 ARG G 24 REMARK 465 PHE G 25 REMARK 465 ARG G 26 REMARK 465 ARG G 27 REMARK 465 GLY G 28 REMARK 465 ALA G 29 REMARK 465 ARG G 30 REMARK 465 ALA G 31 REMARK 465 THR G 149 REMARK 465 ASN G 150 REMARK 465 ASN G 151 REMARK 465 UNK G 190 REMARK 465 UNK G 310 REMARK 465 UNK G 311 REMARK 465 UNK G 355 REMARK 465 UNK G 356 REMARK 465 THR G 406 REMARK 465 TRP G 407 REMARK 465 ASN G 408 REMARK 465 GLY G 409 REMARK 465 THR G 410 REMARK 465 GLY G 461 REMARK 465 VAL G 506 REMARK 465 GLU G 507 REMARK 465 ARG G 508 REMARK 465 ARG G 509 REMARK 465 ARG G 510 REMARK 465 ARG G 511 REMARK 465 ARG G 512 REMARK 465 ARG G 513 REMARK 465 ALA B 512 REMARK 465 VAL B 513 REMARK 465 GLY B 514 REMARK 465 ILE B 515 REMARK 465 GLY B 516 REMARK 465 ALA B 517 REMARK 465 VAL B 518 REMARK 465 PHE B 519 REMARK 465 LEU B 520 REMARK 465 SER B 553 REMARK 465 ASN B 554 REMARK 465 LEU B 555 REMARK 465 LEU B 556 REMARK 465 ARG B 557 REMARK 465 ALA B 558 REMARK 465 PRO B 559 REMARK 465 GLU B 560 REMARK 465 CYS B 561 REMARK 465 GLN B 562 REMARK 465 GLN B 563 REMARK 465 HIS B 564 REMARK 465 LEU B 565 REMARK 465 SER L 6 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 LYS H 127 REMARK 465 LYS H 212 REMARK 465 SER H 213 REMARK 465 CYS H 214 REMARK 465 ASP H 215 REMARK 465 GLU D 212 REMARK 465 PRO D 213 REMARK 465 LYS D 214 REMARK 465 SER D 215 REMARK 465 CYS D 216 REMARK 465 ASP D 217 REMARK 465 LYS D 218 REMARK 465 GLY D 219 REMARK 465 LEU D 220 REMARK 465 GLU D 221 REMARK 465 VAL D 222 REMARK 465 GLN E 1 REMARK 465 CYS E 215 REMARK 465 SER E 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C1 MAN L 301 O2 MAN H 309 1.59 REMARK 500 O5 MAN L 301 O2 MAN H 309 1.84 REMARK 500 C2 MAN L 301 O2 MAN H 309 1.87 REMARK 500 O2 MAN L 301 C1 MAN H 309 2.11 REMARK 500 O2 MAN L 301 O5 MAN H 309 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA G 58 87.35 -65.21 REMARK 500 TYR G 61 79.20 53.71 REMARK 500 THR G 71 -174.21 64.77 REMARK 500 LEU G 122 50.48 -101.36 REMARK 500 CYS G 126 37.57 -84.07 REMARK 500 ASP G 185 -65.92 -146.84 REMARK 500 LYS G 232 36.57 -93.10 REMARK 500 GLN G 258 -85.70 58.24 REMARK 500 GLU G 268 -102.96 60.51 REMARK 500 PRO G 313 94.19 -68.91 REMARK 500 HIS G 352 -61.63 -97.99 REMARK 500 PHE G 391 71.95 -104.82 REMARK 500 ASN G 392 57.24 -150.85 REMARK 500 ASN G 412 53.61 32.78 REMARK 500 ASN G 464 -55.60 -120.27 REMARK 500 ASN B 625 -41.06 -134.36 REMARK 500 ASN B 636 -36.95 -37.83 REMARK 500 GLN B 650 -62.71 -90.10 REMARK 500 ASN L 51 -34.09 -33.66 REMARK 500 ASP L 67 59.50 -106.44 REMARK 500 GLU L 83 102.21 -56.96 REMARK 500 ASP L 152 -112.17 60.29 REMARK 500 GLU L 199 -130.95 60.54 REMARK 500 ASP H 142 122.09 -33.51 REMARK 500 THR H 191 61.22 65.47 REMARK 500 CYS D 22 89.64 -152.87 REMARK 500 ASP D 144 78.99 45.52 REMARK 500 CYS E 29 -159.86 -93.73 REMARK 500 ASP E 53 -133.39 64.53 REMARK 500 ASP E 79 67.27 34.94 REMARK 500 THR E 86 -166.35 -164.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS E 29 CYS E 30 -125.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG I 1 REMARK 610 MAN J 1 REMARK 610 NAG K 1 REMARK 610 NAG M 1 REMARK 610 NAG N 1 REMARK 610 NAG O 1 REMARK 610 NAG P 1 REMARK 610 NAG G 609 REMARK 610 NAG G 638 REMARK 610 MAN L 301 REMARK 610 MAN H 309 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: ALPHA-D-MANNOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 MAN L 301 REMARK 630 MAN H 309 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS FOLLOW RESIDUE NUMBERS FROM HBX NUMBERING, WHICH SPECIFIES REMARK 999 RESIDUE NUMBER ACCORDING TO THE SEQUENCE ALIGNMENT RESULTS WITH HBX REMARK 999 STANDARD. SO, THOSE THREE SEQUENCE NUMBER GAPS COME FROM THREE REMARK 999 SHORT DELETIONS OF OUR CONM SOSIP.V7 SEQUENCE. UNK REISUES IN THE REMARK 999 SAMPLE SEQUENCE WERE JUST ADDED FOR THE HBX NUMBERING. THEY ARE NON- REMARK 999 ENTITY. DBREF 6IEQ G -4 513 PDB 6IEQ 6IEQ -4 513 DBREF 6IEQ B 512 664 PDB 6IEQ 6IEQ 512 664 DBREF 6IEQ L 6 213 PDB 6IEQ 6IEQ 6 213 DBREF 6IEQ H 1 215 PDB 6IEQ 6IEQ 1 215 DBREF 6IEQ D 1 222 PDB 6IEQ 6IEQ 1 222 DBREF 6IEQ E 1 216 PDB 6IEQ 6IEQ 1 216 SEQRES 1 G 497 MET ASP ALA MET LYS ARG GLY LEU CYS CYS VAL LEU LEU SEQRES 2 G 497 LEU CYS GLY ALA VAL PHE VAL SER PRO SER GLN GLU ILE SEQRES 3 G 497 HIS ALA ARG PHE ARG ARG GLY ALA ARG ALA GLU ASN LEU SEQRES 4 G 497 TRP VAL THR VAL TYR TYR GLY VAL PRO VAL TRP LYS ASP SEQRES 5 G 497 ALA GLU THR THR LEU PHE CYS ALA SER ASP ALA LYS ALA SEQRES 6 G 497 TYR ASP THR GLU LYS ARG ASN VAL TRP ALA THR HIS CYS SEQRES 7 G 497 CYS VAL PRO THR ASP PRO ASN PRO GLN GLU ILE VAL LEU SEQRES 8 G 497 GLU ASN VAL THR GLU ASN PHE ASN MET TRP LYS ASN ASN SEQRES 9 G 497 MET VAL GLU GLN MET HIS THR ASP ILE ILE SER LEU TRP SEQRES 10 G 497 ASP GLN SER LEU LYS PRO CYS VAL LYS LEU THR PRO LEU SEQRES 11 G 497 CYS VAL THR LEU ASN CYS THR ASP VAL ASN ALA THR ASN SEQRES 12 G 497 ASN THR THR ASN ASN GLU GLU ILE LYS ASN CYS SER PHE SEQRES 13 G 497 ASN ILE THR THR GLU LEU ARG ASP LYS LYS LYS LYS VAL SEQRES 14 G 497 TYR ALA LEU PHE TYR LYS LEU ASP VAL VAL PRO ILE ASP SEQRES 15 G 497 ASP ASN ASN SER UNK TYR ARG LEU ILE ASN CYS ASN THR SEQRES 16 G 497 SER ALA ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU SEQRES 17 G 497 PRO ILE PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA SEQRES 18 G 497 ILE LEU LYS CYS ASN ASP LYS LYS PHE ASN GLY THR GLY SEQRES 19 G 497 PRO CYS LYS ASN VAL SER THR VAL GLN CYS THR HIS GLY SEQRES 20 G 497 ILE LYS PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SEQRES 21 G 497 SER LEU ALA GLU GLU GLU ILE ILE ILE ARG SER GLU ASN SEQRES 22 G 497 ILE THR ASN ASN ALA LYS THR ILE ILE VAL GLN LEU ASN SEQRES 23 G 497 GLU SER VAL GLU ILE ASN CYS THR ARG PRO ASN ASN ASN SEQRES 24 G 497 THR ARG LYS SER ILE ARG ILE UNK UNK GLY PRO GLY GLN SEQRES 25 G 497 TRP PHE TYR ALA THR GLY ASP ILE ILE GLY ASP ILE ARG SEQRES 26 G 497 GLN ALA HIS CYS ASN ILE SER ARG THR LYS TRP ASN LYS SEQRES 27 G 497 THR LEU GLN GLN VAL ALA LYS LYS LEU ARG GLU HIS PHE SEQRES 28 G 497 ASN UNK UNK LYS THR ILE ILE PHE ASN PRO SER SER GLY SEQRES 29 G 497 GLY ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS GLY SEQRES 30 G 497 GLY GLU PHE PHE TYR CYS ASN THR SER GLU LEU PHE ASN SEQRES 31 G 497 SER THR TRP ASN GLY THR ASN ASN THR ILE THR LEU PRO SEQRES 32 G 497 CYS ARG ILE LYS GLN ILE ILE ASN MET TRP GLN ARG VAL SEQRES 33 G 497 GLY GLN ALA MET TYR ALA PRO PRO ILE GLU GLY LYS ILE SEQRES 34 G 497 ARG CYS THR SER ASN ILE THR GLY LEU LEU LEU THR ARG SEQRES 35 G 497 ASP GLY GLY ASN ASN ASN THR GLU THR PHE ARG PRO GLY SEQRES 36 G 497 GLY GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR SEQRES 37 G 497 LYS TYR LYS VAL VAL LYS ILE GLU PRO LEU GLY VAL ALA SEQRES 38 G 497 PRO THR ARG CYS LYS ARG ARG VAL VAL GLU ARG ARG ARG SEQRES 39 G 497 ARG ARG ARG SEQRES 1 B 153 ALA VAL GLY ILE GLY ALA VAL PHE LEU GLY PHE LEU GLY SEQRES 2 B 153 ALA ALA GLY SER THR MET GLY ALA ALA SER MET THR LEU SEQRES 3 B 153 THR VAL GLN ALA ARG ASN LEU LEU SER GLY ILE VAL GLN SEQRES 4 B 153 GLN GLN SER ASN LEU LEU ARG ALA PRO GLU CYS GLN GLN SEQRES 5 B 153 HIS LEU LEU GLN LEU THR VAL TRP GLY ILE LYS GLN LEU SEQRES 6 B 153 GLN ALA ARG VAL LEU ALA VAL GLU ARG TYR LEU LYS ASP SEQRES 7 B 153 GLN GLN LEU LEU GLY ILE TRP GLY CYS SER GLY LYS LEU SEQRES 8 B 153 ILE CYS CYS THR ASN VAL PRO TRP ASN SER SER TRP SER SEQRES 9 B 153 ASN LYS SER GLN ASP GLU ILE TRP ASP ASN MET THR TRP SEQRES 10 B 153 MET GLU TRP ASP LYS GLU ILE ASN ASN TYR THR ASP ILE SEQRES 11 B 153 ILE TYR SER LEU ILE GLU GLU SER GLN ASN GLN GLN GLU SEQRES 12 B 153 LYS ASN GLU GLN GLU LEU LEU ALA LEU ASP SEQRES 1 L 214 SER TYR VAL SER PRO LEU SER VAL ALA LEU GLY GLU THR SEQRES 2 L 214 ALA ARG ILE SER CYS GLY ARG GLN ALA LEU GLY SER ARG SEQRES 3 L 214 ALA VAL GLN TRP TYR GLN HIS LYS PRO GLY GLN ALA PRO SEQRES 4 L 214 ILE LEU LEU ILE TYR ASN ASN GLN ASP ARG PRO SER GLY SEQRES 5 L 214 ILE PRO GLU ARG PHE SER GLY THR PRO ASP ILE ASN PHE SEQRES 6 L 214 GLY THR THR ALA THR LEU THR ILE SER GLY VAL GLU VAL SEQRES 7 L 214 GLY ASP GLU ALA ASP TYR TYR CYS HIS MET TRP ASP SER SEQRES 8 L 214 ARG SER GLY PHE SER TRP SER PHE GLY GLY ALA THR ARG SEQRES 9 L 214 LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SER CYS SEQRES 16 L 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 214 ALA PRO THR GLU CYS SER SEQRES 1 H 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL ARG SEQRES 2 H 236 PRO SER GLU THR LEU SER VAL THR CYS ILE VAL SER GLY SEQRES 3 H 236 GLY SER ILE SER ASN TYR TYR TRP THR TRP ILE ARG GLN SEQRES 4 H 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SER SEQRES 5 H 236 ASP ARG GLU THR THR THR TYR ASN PRO SER LEU ASN SER SEQRES 6 H 236 ARG ALA VAL ILE SER ARG ASP THR SER LYS ASN GLN LEU SEQRES 7 H 236 SER LEU GLN LEU ARG SER VAL THR THR ALA ASP THR ALA SEQRES 8 H 236 ILE TYR PHE CYS ALA THR ALA ARG ARG GLY GLN ARG ILE SEQRES 9 H 236 TYR GLY VAL VAL SER PHE GLY GLU PHE PHE TYR TYR TYR SEQRES 10 H 236 TYR MET ASP VAL TRP GLY LYS GLY THR ALA VAL THR VAL SEQRES 11 H 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 236 CYS ASP SEQRES 1 D 240 GLU GLY GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 D 240 PRO GLY ALA SER VAL LYS ILE SER CYS LYS THR SER GLY SEQRES 3 D 240 TYR ARG PHE ASN PHE TYR HIS ILE ASN TRP ILE ARG GLN SEQRES 4 D 240 THR ALA GLY ARG GLY PRO GLU TRP MET GLY TRP ILE SER SEQRES 5 D 240 PRO TYR SER GLY ASP LYS ASN LEU ALA PRO ALA PHE GLN SEQRES 6 D 240 ASP ARG VAL ILE MET THR THR ASP THR GLU VAL PRO VAL SEQRES 7 D 240 THR SER PHE THR SER THR GLY ALA ALA TYR MET GLU ILE SEQRES 8 D 240 ARG ASN LEU LYS PHE ASP ASP THR GLY THR TYR PHE CYS SEQRES 9 D 240 ALA LYS GLY LEU LEU ARG ASP GLY SER SER THR TRP LEU SEQRES 10 D 240 PRO TYR LEU TRP GLY GLN GLY THR LEU LEU THR VAL SER SEQRES 11 D 240 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 D 240 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 D 240 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 D 240 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 D 240 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 D 240 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 D 240 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 D 240 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 D 240 ASP LYS GLY LEU GLU VAL SEQRES 1 E 216 GLN SER VAL LEU THR GLN SER ALA SER VAL SER GLY SER SEQRES 2 E 216 LEU GLY GLN SER VAL THR ILE SER CYS THR GLY PRO ASN SEQRES 3 E 216 SER VAL CYS CYS SER HIS LYS SER ILE SER TRP TYR GLN SEQRES 4 E 216 TRP PRO PRO GLY ARG ALA PRO THR LEU ILE ILE TYR GLU SEQRES 5 E 216 ASP ASN GLU ARG ALA PRO GLY ILE SER PRO ARG PHE SER SEQRES 6 E 216 GLY TYR LYS SER TYR TRP SER ALA TYR LEU THR ILE SER SEQRES 7 E 216 ASP LEU ARG PRO GLU ASP GLU THR THR TYR TYR CYS CYS SEQRES 8 E 216 SER TYR THR HIS ASN SER GLY CYS VAL PHE GLY THR GLY SEQRES 9 E 216 THR LYS VAL SER VAL LEU GLY GLN SER LYS ALA ASN PRO SEQRES 10 E 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 E 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 E 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 E 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 E 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 E 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 E 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 E 216 THR VAL ALA PRO THR GLU CYS SER HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET MAN A 6 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG I 1 14 HET NAG I 2 14 HET BMA I 3 11 HET MAN I 4 11 HET MAN I 5 11 HET MAN J 1 11 HET MAN J 2 11 HET NAG K 1 14 HET NAG K 2 14 HET BMA K 3 11 HET MAN K 4 11 HET MAN K 5 11 HET NAG M 1 14 HET NAG M 2 14 HET NAG N 1 14 HET NAG N 2 14 HET BMA N 3 11 HET MAN N 4 11 HET MAN N 5 11 HET NAG O 1 14 HET NAG O 2 14 HET NAG P 1 14 HET NAG P 2 14 HET BMA P 3 11 HET MAN P 4 11 HET MAN P 5 11 HET MAN P 6 11 HET MAN P 7 11 HET MAN P 8 11 HET NAG G 607 14 HET NAG G 608 14 HET NAG G 609 14 HET NAG G 623 14 HET NAG G 638 14 HET NAG B 701 14 HET NAG B 702 14 HET MAN L 301 11 HET MAN H 309 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 7 NAG 25(C8 H15 N O6) FORMUL 7 BMA 6(C6 H12 O6) FORMUL 7 MAN 19(C6 H12 O6) HELIX 1 AA1 ASN G 98 LYS G 117 1 20 HELIX 2 AA2 ILE G 194 SER G 199 1 6 HELIX 3 AA3 SER G 334 ARG G 350 1 17 HELIX 4 AA4 ASP G 368 THR G 373 1 6 HELIX 5 AA5 THR G 387 LEU G 390 5 4 HELIX 6 AA6 ASN G 425 ARG G 429 5 5 HELIX 7 AA7 MET G 475 SER G 481 1 7 HELIX 8 AA8 THR B 529 SER B 534 1 6 HELIX 9 AA9 THR B 536 SER B 546 1 11 HELIX 10 AB1 THR B 569 TRP B 596 1 28 HELIX 11 AB2 SER B 618 ASP B 624 1 7 HELIX 12 AB3 THR B 627 GLN B 650 1 24 HELIX 13 AB4 GLN B 650 ALA B 662 1 13 HELIX 14 AB5 GLU L 79 GLU L 83 5 5 HELIX 15 AB6 SER L 122 ALA L 128 1 7 HELIX 16 AB7 THR L 182 HIS L 189 1 8 HELIX 17 AB8 THR H 83 THR H 87 5 5 HELIX 18 AB9 ARG D 28 TYR D 32 5 5 HELIX 19 AC1 LYS D 83 THR D 87 5 5 HELIX 20 AC2 SER D 156 ALA D 158 5 3 HELIX 21 AC3 ARG E 81 GLU E 85 5 5 HELIX 22 AC4 THR E 185 SER E 191 1 7 SHEET 1 AA1 3 LEU G 494 THR G 499 0 SHEET 2 AA1 3 TRP G 35 TYR G 40 -1 N TYR G 39 O GLY G 495 SHEET 3 AA1 3 ILE B 603 PRO B 609 -1 O CYS B 604 N VAL G 38 SHEET 1 AA2 5 TRP G 45 ASP G 47 0 SHEET 2 AA2 5 TYR G 486 ILE G 491 -1 O LYS G 490 N LYS G 46 SHEET 3 AA2 5 PHE G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 AA2 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 AA2 5 ILE G 84 LEU G 86 -1 N ILE G 84 O THR G 244 SHEET 1 AA3 2 PHE G 53 ALA G 55 0 SHEET 2 AA3 2 HIS G 216 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA4 2 GLU G 91 PHE G 93 0 SHEET 2 AA4 2 GLY G 237 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 AA5 3 ASN G 130 ASP G 133 0 SHEET 2 AA5 3 LYS G 155 THR G 162 -1 O SER G 158 N ASN G 130 SHEET 3 AA5 3 LYS G 169 PHE G 176 -1 O LYS G 170 N ILE G 161 SHEET 1 AA6 2 VAL G 181 VAL G 182 0 SHEET 2 AA6 2 ARG G 192 LEU G 193 -1 O ARG G 192 N VAL G 182 SHEET 1 AA7 3 ILE G 201 GLN G 203 0 SHEET 2 AA7 3 ALA G 433 TYR G 435 1 O ALA G 433 N THR G 202 SHEET 3 AA7 3 ILE G 423 ILE G 424 -1 N ILE G 424 O MET G 434 SHEET 1 AA8 5 LEU G 259 LEU G 261 0 SHEET 2 AA8 5 GLY G 441 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 AA8 5 ILE G 284 ASN G 302 -1 N VAL G 292 O ILE G 449 SHEET 4 AA8 5 THR G 465 PRO G 470 0 SHEET 5 AA8 5 THR G 358 PHE G 361 1 N ILE G 360 O GLU G 466 SHEET 1 AA9 7 ILE G 271 SER G 274 0 SHEET 2 AA9 7 ILE G 284 ASN G 302 -1 O ILE G 285 N ARG G 273 SHEET 3 AA9 7 GLY G 441 ARG G 456 -1 O ILE G 449 N VAL G 292 SHEET 4 AA9 7 HIS G 330 ILE G 333 0 SHEET 5 AA9 7 ILE G 414 LYS G 421 -1 O LEU G 416 N CYS G 331 SHEET 6 AA9 7 GLU G 381 CYS G 385 -1 N TYR G 384 O ARG G 419 SHEET 7 AA9 7 HIS G 374 CYS G 378 -1 N HIS G 374 O CYS G 385 SHEET 1 AB1 2 ARG G 304 ARG G 308 0 SHEET 2 AB1 2 TRP G 316 THR G 320 -1 O ALA G 319 N LYS G 305 SHEET 1 AB2 5 SER L 9 ALA L 14 0 SHEET 2 AB2 5 THR L 102 LEU L 107 1 O ARG L 103 N LEU L 11 SHEET 3 AB2 5 ASP L 85 HIS L 89 -1 N TYR L 86 O THR L 102 SHEET 4 AB2 5 GLN L 34 HIS L 38 -1 N HIS L 38 O ASP L 85 SHEET 5 AB2 5 ILE L 45 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AB3 3 ALA L 19 SER L 22 0 SHEET 2 AB3 3 THR L 72 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 AB3 3 PHE L 62 GLY L 64 -1 N SER L 63 O THR L 74 SHEET 1 AB4 4 SER L 115 PHE L 119 0 SHEET 2 AB4 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB4 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AB4 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB5 4 SER L 115 PHE L 119 0 SHEET 2 AB5 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB5 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AB5 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB6 4 SER L 154 PRO L 155 0 SHEET 2 AB6 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB6 4 TYR L 192 HIS L 198 -1 O SER L 193 N LYS L 150 SHEET 4 AB6 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 AB7 4 LEU H 4 SER H 7 0 SHEET 2 AB7 4 LEU H 18 VAL H 24 -1 O THR H 21 N SER H 7 SHEET 3 AB7 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AB7 4 ALA H 67 ASP H 72 -1 N VAL H 68 O GLN H 81 SHEET 1 AB8 6 LEU H 11 VAL H 12 0 SHEET 2 AB8 6 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AB8 6 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AB8 6 TYR H 33 GLN H 39 -1 N ILE H 37 O PHE H 91 SHEET 5 AB8 6 GLU H 46 ILE H 51 -1 O ILE H 51 N TRP H 34 SHEET 6 AB8 6 THR H 57 TYR H 59 -1 O THR H 58 N TYR H 50 SHEET 1 AB9 4 LEU H 11 VAL H 12 0 SHEET 2 AB9 4 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AB9 4 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AB9 4 PHE H 100J TRP H 101 -1 O TYR H 100M N GLY H 98 SHEET 1 AC1 4 VAL H 119 LEU H 122 0 SHEET 2 AC1 4 THR H 133 TYR H 143 -1 O LEU H 139 N PHE H 120 SHEET 3 AC1 4 TYR H 174 PRO H 183 -1 O SER H 178 N CYS H 138 SHEET 4 AC1 4 VAL H 161 THR H 163 -1 N HIS H 162 O VAL H 179 SHEET 1 AC2 4 VAL H 119 LEU H 122 0 SHEET 2 AC2 4 THR H 133 TYR H 143 -1 O LEU H 139 N PHE H 120 SHEET 3 AC2 4 TYR H 174 PRO H 183 -1 O SER H 178 N CYS H 138 SHEET 4 AC2 4 VAL H 167 LEU H 168 -1 N VAL H 167 O SER H 175 SHEET 1 AC3 3 THR H 149 TRP H 152 0 SHEET 2 AC3 3 ILE H 193 HIS H 198 -1 O ASN H 195 N SER H 151 SHEET 3 AC3 3 THR H 203 LYS H 208 -1 O VAL H 205 N VAL H 196 SHEET 1 AC4 4 VAL D 5 GLN D 6 0 SHEET 2 AC4 4 VAL D 18 LYS D 23 -1 O LYS D 23 N VAL D 5 SHEET 3 AC4 4 SER D 74 ILE D 82 -1 O ILE D 82 N VAL D 18 SHEET 4 AC4 4 VAL D 67 PRO D 72D-1 N THR D 70 O TYR D 79 SHEET 1 AC5 6 GLU D 10 LYS D 12 0 SHEET 2 AC5 6 THR D 107 VAL D 111 1 O THR D 110 N LYS D 12 SHEET 3 AC5 6 GLY D 88 GLY D 95 -1 N TYR D 90 O THR D 107 SHEET 4 AC5 6 ILE D 34 THR D 40 -1 N ILE D 37 O PHE D 91 SHEET 5 AC5 6 GLY D 44 ILE D 51 -1 O GLY D 49 N TRP D 36 SHEET 6 AC5 6 LYS D 57 LEU D 59 -1 O ASN D 58 N TRP D 50 SHEET 1 AC6 4 GLU D 10 LYS D 12 0 SHEET 2 AC6 4 THR D 107 VAL D 111 1 O THR D 110 N LYS D 12 SHEET 3 AC6 4 GLY D 88 GLY D 95 -1 N TYR D 90 O THR D 107 SHEET 4 AC6 4 PRO D 100F TRP D 103 -1 O TYR D 101 N LYS D 94 SHEET 1 AC7 4 SER D 120 SER D 130 0 SHEET 2 AC7 4 THR D 135 TYR D 145 -1 O LEU D 141 N PHE D 122 SHEET 3 AC7 4 TYR D 176 PRO D 185 -1 O VAL D 182 N LEU D 138 SHEET 4 AC7 4 VAL D 163 THR D 165 -1 N HIS D 164 O VAL D 181 SHEET 1 AC8 4 SER D 120 SER D 130 0 SHEET 2 AC8 4 THR D 135 TYR D 145 -1 O LEU D 141 N PHE D 122 SHEET 3 AC8 4 TYR D 176 PRO D 185 -1 O VAL D 182 N LEU D 138 SHEET 4 AC8 4 VAL D 169 LEU D 170 -1 N VAL D 169 O SER D 177 SHEET 1 AC9 3 THR D 151 TRP D 154 0 SHEET 2 AC9 3 ILE D 195 HIS D 200 -1 O ASN D 197 N SER D 153 SHEET 3 AC9 3 THR D 205 ARG D 210 -1 O VAL D 207 N VAL D 198 SHEET 1 AD1 4 THR E 5 GLN E 6 0 SHEET 2 AD1 4 VAL E 18 THR E 23 -1 O THR E 23 N THR E 5 SHEET 3 AD1 4 SER E 72 ILE E 77 -1 O ILE E 77 N VAL E 18 SHEET 4 AD1 4 PHE E 64 LYS E 68 -1 N TYR E 67 O TYR E 74 SHEET 1 AD2 5 SER E 9 SER E 13 0 SHEET 2 AD2 5 THR E 105 LEU E 110 1 O LEU E 110 N GLY E 12 SHEET 3 AD2 5 THR E 87 TYR E 93 -1 N TYR E 88 O THR E 105 SHEET 4 AD2 5 SER E 34 GLN E 39 -1 N TYR E 38 O TYR E 89 SHEET 5 AD2 5 THR E 47 ILE E 50 -1 O THR E 47 N GLN E 39 SHEET 1 AD3 4 SER E 9 SER E 13 0 SHEET 2 AD3 4 THR E 105 LEU E 110 1 O LEU E 110 N GLY E 12 SHEET 3 AD3 4 THR E 87 TYR E 93 -1 N TYR E 88 O THR E 105 SHEET 4 AD3 4 VAL E 100 PHE E 101 -1 O VAL E 100 N SER E 92 SHEET 1 AD4 4 SER E 118 PHE E 122 0 SHEET 2 AD4 4 ALA E 134 PHE E 143 -1 O SER E 141 N SER E 118 SHEET 3 AD4 4 TYR E 176 LEU E 184 -1 O SER E 180 N CYS E 138 SHEET 4 AD4 4 VAL E 163 THR E 165 -1 N GLU E 164 O TYR E 181 SHEET 1 AD5 4 SER E 118 PHE E 122 0 SHEET 2 AD5 4 ALA E 134 PHE E 143 -1 O SER E 141 N SER E 118 SHEET 3 AD5 4 TYR E 176 LEU E 184 -1 O SER E 180 N CYS E 138 SHEET 4 AD5 4 SER E 169 LYS E 170 -1 N SER E 169 O ALA E 177 SHEET 1 AD6 3 THR E 149 ALA E 154 0 SHEET 2 AD6 3 TYR E 195 THR E 200 -1 O GLN E 198 N ALA E 151 SHEET 3 AD6 3 THR E 205 VAL E 210 -1 O VAL E 210 N TYR E 195 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 3 CYS G 126 CYS G 196 1555 1555 2.03 SSBOND 4 CYS G 131 CYS G 157 1555 1555 2.03 SSBOND 5 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 6 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 7 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 8 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 9 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 10 CYS G 501 CYS B 605 1555 1555 2.03 SSBOND 11 CYS B 598 CYS B 604 1555 1555 2.03 SSBOND 12 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 13 CYS L 135 CYS L 194 1555 1555 2.03 SSBOND 14 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 15 CYS H 138 CYS H 194 1555 1555 2.03 SSBOND 16 CYS D 22 CYS D 92 1555 1555 2.03 SSBOND 17 CYS D 140 CYS D 196 1555 1555 2.03 SSBOND 18 CYS E 22 CYS E 90 1555 1555 2.04 SSBOND 19 CYS E 91 CYS E 99 1555 1555 2.03 SSBOND 20 CYS E 138 CYS E 197 1555 1555 2.03 LINK ND2 ASN G 88 C1 NAG A 1 1555 1555 1.43 LINK ND2 ASN G 130 C1 NAG G 607 1555 1555 1.45 LINK ND2 ASN G 160 C1 NAG G 608 1555 1555 1.43 LINK ND2 ASN G 229 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN G 234 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN G 276 C1 NAG G 623 1555 1555 1.43 LINK ND2 ASN B 611 C1 NAG B 702 1555 1555 1.44 LINK ND2 ASN B 637 C1 NAG B 701 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.43 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.43 LINK O6 BMA A 3 C1 MAN A 4 1555 1555 1.46 LINK O3 BMA A 3 C1 MAN A 6 1555 1555 1.45 LINK O3 MAN A 4 C1 MAN A 5 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG I 2 C1 BMA I 3 1555 1555 1.44 LINK O3 BMA I 3 C1 MAN I 4 1555 1555 1.45 LINK O2 MAN I 4 C1 MAN I 5 1555 1555 1.45 LINK O6 MAN J 1 C1 MAN J 2 1555 1555 1.45 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.45 LINK O4 NAG K 2 C1 BMA K 3 1555 1555 1.46 LINK O3 BMA K 3 C1 MAN K 4 1555 1555 1.45 LINK O6 BMA K 3 C1 MAN K 5 1555 1555 1.45 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.44 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.45 LINK O4 NAG N 2 C1 BMA N 3 1555 1555 1.45 LINK O3 BMA N 3 C1 MAN N 4 1555 1555 1.44 LINK O6 BMA N 3 C1 MAN N 5 1555 1555 1.45 LINK O4 NAG O 1 C1 NAG O 2 1555 1555 1.45 LINK O4 NAG P 1 C1 NAG P 2 1555 1555 1.44 LINK O4 NAG P 2 C1 BMA P 3 1555 1555 1.43 LINK O3 BMA P 3 C1 MAN P 4 1555 1555 1.44 LINK O6 BMA P 3 C1 MAN P 7 1555 1555 1.45 LINK O2 MAN P 4 C1 MAN P 5 1555 1555 1.44 LINK O2 MAN P 5 C1 MAN P 6 1555 1555 1.45 LINK O6 MAN P 7 C1 MAN P 8 1555 1555 1.45 CISPEP 1 SER B 546 GLY B 547 0 0.22 CISPEP 2 TYR L 141 PRO L 142 0 0.72 CISPEP 3 GLY H 131 GLY H 132 0 10.83 CISPEP 4 PHE H 144 PRO H 145 0 -3.59 CISPEP 5 GLU H 146 PRO H 147 0 0.07 CISPEP 6 LEU H 187 GLY H 188 0 7.11 CISPEP 7 GLY H 188 THR H 189 0 2.77 CISPEP 8 PHE D 146 PRO D 147 0 -1.48 CISPEP 9 GLU D 148 PRO D 149 0 -3.10 CISPEP 10 ALA E 131 ASN E 132 0 9.92 CISPEP 11 TYR E 144 PRO E 145 0 2.53 CRYST1 127.590 127.590 315.507 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007838 0.004525 0.000000 0.00000 SCALE2 0.000000 0.009050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003170 0.00000