HEADER IMMUNE SYSTEM 17-SEP-18 6IEX TITLE CRYSTAL STRUCTURE OF HLA-B*4001 IN COMPLEX WITH SARS-COV DERIVED TITLE 2 PEPTIDE N216-225 GETALALLLL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-298; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 21-119; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: GLY-GLU-THR-ALA-LEU-ALA-LEU-LEU-LEU-LEU; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; SOURCE 20 ORGANISM_TAXID: 227859 KEYWDS HLA-B*4001, SARS-COV, N216-225, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.JI,L.NIU,W.PENG,Y.ZHANG,Y.SHI,J.QI,G.F.GAO,W.J.LIU REVDAT 3 16-OCT-24 6IEX 1 REMARK REVDAT 2 31-MAR-21 6IEX 1 JRNL REVDAT 1 18-SEP-19 6IEX 0 JRNL AUTH W.JI,L.NIU,W.PENG,Y.ZHANG,H.CHENG,F.GAO,Y.SHI,J.QI,G.F.GAO, JRNL AUTH 2 W.J.LIU JRNL TITL SALT BRIDGE-FORMING RESIDUES POSITIONED OVER VIRAL PEPTIDES JRNL TITL 2 PRESENTED BY MHC CLASS I IMPACTS T-CELL RECOGNITION IN A JRNL TITL 3 BINDING-DEPENDENT MANNER. JRNL REF MOL.IMMUNOL. V. 112 274 2019 JRNL REFN ISSN 0161-5890 JRNL PMID 31226552 JRNL DOI 10.1016/J.MOLIMM.2019.06.005 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 19343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8393 - 4.4250 0.99 2836 156 0.1980 0.2142 REMARK 3 2 4.4250 - 3.5128 1.00 2721 134 0.1830 0.2311 REMARK 3 3 3.5128 - 3.0689 0.99 2655 144 0.2156 0.2466 REMARK 3 4 3.0689 - 2.7884 0.99 2626 158 0.2342 0.3542 REMARK 3 5 2.7884 - 2.5886 0.97 2589 131 0.2401 0.3020 REMARK 3 6 2.5886 - 2.4360 0.96 2544 128 0.2440 0.3074 REMARK 3 7 2.4360 - 2.3140 0.91 2387 134 0.2624 0.3649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 30.17 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.58730 REMARK 3 B22 (A**2) : 16.28020 REMARK 3 B33 (A**2) : -0.69290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3227 REMARK 3 ANGLE : 0.917 4375 REMARK 3 CHIRALITY : 0.067 452 REMARK 3 PLANARITY : 0.003 577 REMARK 3 DIHEDRAL : 17.854 1203 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:174) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0646 10.3352 8.8548 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.2238 REMARK 3 T33: 0.1971 T12: 0.0043 REMARK 3 T13: -0.0091 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.6894 L22: 0.5550 REMARK 3 L33: 0.4234 L12: 0.0469 REMARK 3 L13: -0.3667 L23: -0.0812 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.0526 S13: -0.0764 REMARK 3 S21: -0.0266 S22: 0.0538 S23: -0.0956 REMARK 3 S31: 0.0156 S32: 0.1828 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 175:274) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5639 1.9763 29.8119 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.3038 REMARK 3 T33: 0.3670 T12: 0.0344 REMARK 3 T13: 0.0295 T23: 0.0886 REMARK 3 L TENSOR REMARK 3 L11: 0.5398 L22: 0.3539 REMARK 3 L33: 0.4530 L12: 0.4305 REMARK 3 L13: -0.1230 L23: -0.1736 REMARK 3 S TENSOR REMARK 3 S11: 0.1735 S12: 0.1762 S13: 0.1196 REMARK 3 S21: -0.0555 S22: -0.0009 S23: 0.0413 REMARK 3 S31: -0.1117 S32: -0.2338 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:28) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2496 2.8064 33.8358 REMARK 3 T TENSOR REMARK 3 T11: 0.2508 T22: 0.2786 REMARK 3 T33: 0.2422 T12: 0.0265 REMARK 3 T13: 0.0050 T23: 0.0773 REMARK 3 L TENSOR REMARK 3 L11: 0.1657 L22: 0.1128 REMARK 3 L33: 0.3491 L12: -0.0159 REMARK 3 L13: 0.0373 L23: 0.1909 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.0118 S13: -0.0646 REMARK 3 S21: -0.1797 S22: 0.0525 S23: 0.0379 REMARK 3 S31: 0.0832 S32: -0.1870 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 29:51) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4921 6.8141 35.8255 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.3872 REMARK 3 T33: 0.4499 T12: 0.0213 REMARK 3 T13: -0.0038 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 0.1615 L22: 0.0880 REMARK 3 L33: 0.0815 L12: 0.0598 REMARK 3 L13: -0.0154 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: 0.0207 S13: -0.0023 REMARK 3 S21: -0.1725 S22: -0.0299 S23: -0.4756 REMARK 3 S31: 0.0712 S32: 0.1943 S33: 0.0008 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 52:71) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0644 6.1667 25.8730 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.2790 REMARK 3 T33: 0.3465 T12: 0.0227 REMARK 3 T13: 0.0078 T23: 0.0919 REMARK 3 L TENSOR REMARK 3 L11: 0.1375 L22: 0.1058 REMARK 3 L33: 0.0621 L12: 0.1057 REMARK 3 L13: 0.0463 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.1796 S13: -0.1911 REMARK 3 S21: -0.2116 S22: -0.0324 S23: 0.0245 REMARK 3 S31: 0.1271 S32: -0.0020 S33: 0.0018 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 72:90) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9652 8.2751 42.1471 REMARK 3 T TENSOR REMARK 3 T11: 0.4383 T22: 0.3760 REMARK 3 T33: 0.3352 T12: -0.0256 REMARK 3 T13: -0.0435 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 0.0165 L22: 0.0855 REMARK 3 L33: 0.1165 L12: -0.0382 REMARK 3 L13: -0.0444 L23: 0.1000 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.1821 S13: 0.0238 REMARK 3 S21: 0.2499 S22: -0.0023 S23: 0.1145 REMARK 3 S31: -0.0549 S32: 0.0756 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 91:99) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1697 4.8106 42.1458 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.5508 REMARK 3 T33: 0.4723 T12: 0.0168 REMARK 3 T13: -0.0187 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0150 L22: 0.0116 REMARK 3 L33: 0.0293 L12: -0.0132 REMARK 3 L13: -0.0213 L23: 0.0186 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: -0.1712 S13: 0.0073 REMARK 3 S21: 0.0536 S22: 0.0226 S23: 0.1727 REMARK 3 S31: -0.1902 S32: -0.1320 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300009078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19343 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC REMARK 280 DEHYDRATE, PH 6.5 AND 18% W-V POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.24100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.46800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.63700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.46800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.24100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.63700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 74 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 122 O HOH B 132 1.96 REMARK 500 O HOH A 327 O HOH A 338 2.05 REMARK 500 O HOH B 114 O HOH B 120 2.12 REMARK 500 O LEU C 5 O HOH C 101 2.13 REMARK 500 O ARG A 48 NH2 ARG A 239 2.13 REMARK 500 O HOH A 339 O HOH A 366 2.15 REMARK 500 O HOH A 358 O HOH A 363 2.17 REMARK 500 OG1 THR A 31 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 21.88 -149.13 REMARK 500 ASP A 29 -122.26 52.73 REMARK 500 SER A 42 79.39 -109.63 REMARK 500 ASN A 114 94.43 -173.60 REMARK 500 ARG A 151 39.58 36.18 REMARK 500 ILE A 194 -99.62 -82.83 REMARK 500 SER A 195 -159.37 -97.62 REMARK 500 GLN A 224 58.67 -90.21 REMARK 500 ARG A 239 -12.09 82.22 REMARK 500 TRP B 60 -5.24 79.61 REMARK 500 ARG B 97 42.61 -76.35 REMARK 500 LEU C 7 50.56 -115.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 6IEX A 1 274 UNP F4NBU6 F4NBU6_HUMAN 25 298 DBREF 6IEX B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 6IEX C 1 10 PDB 6IEX 6IEX 1 10 SEQADV 6IEX MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 274 GLY SER HIS SER MET ARG TYR PHE HIS THR ALA MET SER SEQRES 2 A 274 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE THR VAL GLY SEQRES 3 A 274 TYR VAL ASP ASP THR LEU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 274 ALA THR SER PRO ARG LYS GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 274 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR GLN SEQRES 6 A 274 ILE SER LYS THR ASN THR GLN THR TYR ARG GLU SER LEU SEQRES 7 A 274 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 274 SER HIS THR LEU GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 274 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASN GLN TYR ALA SEQRES 10 A 274 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 274 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE SER SEQRES 12 A 274 GLN ARG LYS LEU GLU ALA ALA ARG VAL ALA GLU GLN LEU SEQRES 13 A 274 ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU ARG SEQRES 14 A 274 ARG TYR LEU GLU ASN GLY LYS ASP LYS LEU GLU ARG ALA SEQRES 15 A 274 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 A 274 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 274 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 274 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 274 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 274 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 274 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 274 TRP SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 10 GLY GLU THR ALA LEU ALA LEU LEU LEU LEU FORMUL 4 HOH *113(H2 O) HELIX 1 AA1 GLY A 56 ASN A 86 1 31 HELIX 2 AA2 ASP A 137 ALA A 150 1 14 HELIX 3 AA3 ARG A 151 GLY A 162 1 12 HELIX 4 AA4 GLY A 162 GLY A 175 1 14 HELIX 5 AA5 GLY A 175 GLU A 180 1 6 HELIX 6 AA6 GLN A 224 GLN A 226 5 3 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N THR A 24 O PHE A 36 SHEET 4 AA1 8 HIS A 3 MET A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O TYR A 99 N TYR A 7 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 3 THR A 214 ARG A 219 0 SHEET 2 AA4 3 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 3 AA4 3 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 1.05 CISPEP 2 ARG A 219 ASP A 220 0 -12.41 CISPEP 3 HIS B 31 PRO B 32 0 4.28 CRYST1 52.482 69.274 120.936 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008269 0.00000